BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645689|ref|NP_207866.1| conserved hypothetical secreted protein [Helicobacter pylori 26695] (438 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207866.1|  (NC_000915) conserved hypothetical secrete...   890  0.0
ref|NP_223069.1|  (NC_000921) putative [Helicobacter pylori ...   858  0.0
ref|NP_282491.1|  (NC_002163) putative periplasmic protein [...   330  2e-89

>ref|NP_207866.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
           pylori 26695]
 pir||C64654 conserved hypothetical secreted protein HP1075 - Helicobacter
           pylori (strain 26695)
 gb|AAD08118.1| (AE000614) conserved hypothetical secreted protein [Helicobacter
           pylori 26695]
          Length = 438

 Score =  890 bits (2300), Expect = 0.0
 Identities = 438/438 (100%), Positives = 438/438 (100%)

Query: 1   MKKIWLLVWGLCSWVFLHAIEMIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL 60
           MKKIWLLVWGLCSWVFLHAIEMIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL
Sbjct: 1   MKKIWLLVWGLCSWVFLHAIEMIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL 60

Query: 61  MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS 120
           MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS
Sbjct: 61  MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS 120

Query: 121 IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINA 180
           IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINA
Sbjct: 121 IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINA 180

Query: 181 HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI 240
           HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI
Sbjct: 181 HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI 240

Query: 241 EGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRPKLNHFPLPHNTK 300
           EGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRPKLNHFPLPHNTK
Sbjct: 241 EGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRPKLNHFPLPHNTK 300

Query: 301 IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVK 360
           IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVK
Sbjct: 301 IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVK 360

Query: 361 IGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYR 420
           IGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYR
Sbjct: 361 IGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYR 420

Query: 421 IEFYKNNAFSGMILVKFV 438
           IEFYKNNAFSGMILVKFV
Sbjct: 421 IEFYKNNAFSGMILVKFV 438

>ref|NP_223069.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71943 hypothetical protein jhp0350 - Helicobacter pylori (strain J99)
 gb|AAD05927.1| (AE001470) putative [Helicobacter pylori J99]
          Length = 438

 Score =  858 bits (2216), Expect = 0.0
 Identities = 423/438 (96%), Positives = 430/438 (97%)

Query: 1   MKKIWLLVWGLCSWVFLHAIEMIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL 60
           MKKIWLLVWGL S  FLHAIE IEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL
Sbjct: 1   MKKIWLLVWGLYSLAFLHAIETIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFL 60

Query: 61  MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS 120
           MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS
Sbjct: 61  MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPS 120

Query: 121 IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINA 180
           +DAVLHLHDGGGYYRPVY+DAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIE+INA
Sbjct: 121 VDAVLHLHDGGGYYRPVYIDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIENINA 180

Query: 181 HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI 240
           HLLHPIE+YHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPL SRVFYHLQAI
Sbjct: 181 HLLHPIEKYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLESRVFYHLQAI 240

Query: 241 EGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRPKLNHFPLPHNTK 300
           EGLLNQLNIPFKRDF+LNPNSVHALINDK+LWAKISSLPKMPLFNLRPKLNHFPLP NTK
Sbjct: 241 EGLLNQLNIPFKRDFELNPNSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPSNTK 300

Query: 301 IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVK 360
           IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFD SLEEVKMQIDNKDQMVK
Sbjct: 301 IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVK 360

Query: 361 IGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYR 420
           IGSVVEVKESFYIHAMDNIRANVIGFSVSNE+KPNE GYTIKFKDFQKRFSLDKQERIYR
Sbjct: 361 IGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNETGYTIKFKDFQKRFSLDKQERIYR 420

Query: 421 IEFYKNNAFSGMILVKFV 438
           IEFYKNNAFSGMILVKFV
Sbjct: 421 IEFYKNNAFSGMILVKFV 438

>ref|NP_282491.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||F81278 probable periplasmic protein Cj1345c [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73772.1| (AL139078) putative periplasmic protein [Campylobacter jejuni]
          Length = 464

 Score =  330 bits (846), Expect = 2e-89
 Identities = 172/411 (41%), Positives = 249/411 (59%), Gaps = 10/411 (2%)

Query: 17  LHAIEMIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFLMHYSVLKGLVEVVPVL 76
           + A+E+      N +  D    +L+  GIQGDEPGGF+A +L L  Y++ KG + V P L
Sbjct: 14  IFALELDFSVGENGKSLDDNNTVLIFGGIQGDEPGGFHAASLLLSDYNITKGKIIVAPNL 73

Query: 77  NKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPSIDAVLHLHDGGGYYRP 136
              S+++  RG  GD+NRKFA++   DP+Y T+Q IK LI  P +  V++LHDG G+Y+P
Sbjct: 74  AFDSIIKRSRGNNGDLNRKFASISPKDPDYKTVQRIKELILLPEVSMVINLHDGWGFYKP 133

Query: 137 VYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRT 196
            Y+DAM NPKRWGN  +ID  E+  +K+P+L   A  T+ S+N+ L  P   YHLKNT+T
Sbjct: 134 TYIDAMQNPKRWGNSSVIDTSEINASKYPDLENIATQTVNSVNSSLADPKHAYHLKNTKT 193

Query: 197 AQ-GDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDF 255
            + GDTEM KALT++ I+  K+AFANEASK LP+  R +YHL AIE  L    I F RDF
Sbjct: 194 QELGDTEMLKALTYFVISNHKAAFANEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDF 253

Query: 256 DLNPNSVHALINDKNLWAKI-SSLPKMPLFNLRPKLNHFPLPHNTKIPQIPIESNAYIVG 314
           +L P  V   IN K L  K+      + L N R  +N+ P P N    ++   ++  +  
Sbjct: 254 ELTPQGVDKAIN-KELEVKLFDDRILLSLKNPRKVINYVPFPVN---KELNYNTSNELTA 309

Query: 315 LVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVKIGSVVEVKESFYIH 374
           ++      +++YGN+  TRL P Y+EF  +  EV  Q+D  +  V  G+ V+VKE+F I 
Sbjct: 310 VIAEGNSFYIQYGNRFQTRLYPEYLEFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIP 369

Query: 375 AMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQERIYRIEFYK 425
            + N+R N+IGF    ++  +E+G  +  K+ Q ++SLD   +IYR EFY+
Sbjct: 370 KIANVRVNIIGF----DHSKDESGILVHKKNMQTQYSLDMAGKIYRAEFYE 416

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,756,728
Number of Sequences: 1026957
Number of extensions: 12470617
Number of successful extensions: 25965
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25959
Number of HSP's gapped (non-prelim): 3
length of query: 438
length of database: 324,149,939
effective HSP length: 124
effective length of query: 314
effective length of database: 196,807,271
effective search space: 61797483094
effective search space used: 61797483094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)