BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645690|ref|NP_207867.1| hypothetical protein
[Helicobacter pylori 26695]
         (171 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207867.1|  (NC_000915) hypothetical protein [Helicoba...   330  5e-90
ref|NP_223068.1|  (NC_000921) putative [Helicobacter pylori ...   309  1e-83
ref|NP_282778.1|  (NC_002163) hypothetical protein Cj1650 [C...    69  3e-11

>ref|NP_207867.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64654 hypothetical protein HP1076 - Helicobacter pylori (strain 26695)
 gb|AAD08123.1| (AE000614) H. pylori predicted coding region HP1076 [Helicobacter
           pylori 26695]
          Length = 171

 Score =  330 bits (845), Expect = 5e-90
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNK 60
           MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNK
Sbjct: 1   MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNK 60

Query: 61  SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLEN 120
           SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLEN
Sbjct: 61  SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLEN 120

Query: 121 VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNQSLKDLLSDNLRA 171
           VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNQSLKDLLSDNLRA
Sbjct: 121 VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNQSLKDLLSDNLRA 171



>ref|NP_223068.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71943 hypothetical protein jhp0349 - Helicobacter pylori (strain J99)
 gb|AAD05928.1| (AE001470) putative [Helicobacter pylori J99]
          Length = 173

 Score =  309 bits (791), Expect = 1e-83
 Identities = 163/173 (94%), Positives = 167/173 (96%), Gaps = 2/173 (1%)

Query: 1   MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNK 60
           MDILKTLQKHLGDVETSDF TNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKL NK
Sbjct: 1   MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLLNK 60

Query: 61  SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLEN 120
           SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDE+FSMIV NPL+LLEN
Sbjct: 61  SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEVFSMIVDNPLNLLEN 120

Query: 121 VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMP--SFSNQSLKDLLSDNLRA 171
           VG FQAYLEEKLNEIKELLGYLSESLSNPKAFMP  SFSN+SLKDLLSD+LRA
Sbjct: 121 VGGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSNKSLKDLLSDDLRA 173



>ref|NP_282778.1| (NC_002163) hypothetical protein Cj1650 [Campylobacter jejuni]
 pir||H81261 hypothetical protein Cj1650 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73638.1| (AL139079) hypothetical protein Cj1650 [Campylobacter jejuni]
          Length = 166

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 41/149 (27%), Positives = 79/149 (52%), Gaps = 14/149 (9%)

Query: 4   LKTLQKHLGDVE-TSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSM 62
           L   +KHLG+++  ++F  N I            + + N+ +GALQVL ++ KK+    +
Sbjct: 5   LDIFKKHLGEIQGVNEFKANQI---------CSQINDANDFIGALQVLDMSLKKIEKSIL 55

Query: 63  GL--EDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLE- 119
               E+ D +Q   +     ++++NC F+ + LF    N+ +  ++F   + NPL +L+ 
Sbjct: 56  ERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLFEFEIANPLLILQT 115

Query: 120 -NVGEFQAYLEEKLNEIKELLGYLSESLS 147
            N     AY+++K +EIK +L  LS +++
Sbjct: 116 SNYEGVLAYIQDKRDEIKIILSELSTAIT 144



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,364,238
Number of Sequences: 1026957
Number of extensions: 3306707
Number of successful extensions: 12330
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12325
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 324,149,939
effective HSP length: 112
effective length of query: 59
effective length of database: 209,130,755
effective search space: 12338714545
effective search space used: 12338714545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 93 (40.4 bits)