BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645693|ref|NP_207870.1| hypothetical protein
[Helicobacter pylori 26695]
(370 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207870.1| (NC_000915) hypothetical protein [Helicoba... 739 0.0
ref|NP_223065.1| (NC_000921) putative [Helicobacter pylori ... 675 0.0
ref|NP_224181.1| (NC_000921) putative [Helicobacter pylori ... 114 1e-24
ref|NP_375999.1| (NC_003106) 339aa long conserved hypotheti... 75 9e-13
ref|NP_377996.1| (NC_003106) 382aa long hypothetical protei... 74 4e-12
ref|NP_343394.1| (NC_002754) Conserved hypothetical protein... 65 2e-09
ref|NP_142158.1| (NC_000961) hypothetical protein [Pyrococc... 63 6e-09
ref|NP_377073.1| (NC_003106) 352aa long hypothetical protei... 63 6e-09
ref|NP_395960.1| (NC_003064) AGR_pAT_32p [Agrobacterium tum... 60 5e-08
ref|NP_535400.1| (NC_003306) conserved hypothetical protein... 60 5e-08
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 57 3e-07
ref|NP_378240.1| (NC_003106) 494aa long hypothetical protei... 55 1e-06
ref|NP_346635.1| (NC_003028) recF protein [Streptococcus pn... 53 6e-06
ref|NP_359623.1| (NC_003098) Recombination protein RecF [St... 53 6e-06
gb|EAA02652.1| (AAAB01006115) ebiP334 [Anopheles gambiae st... 52 1e-05
sp|P50925|RECF_LACLC DNA replication and repair protein rec... 51 2e-05
ref|NP_346651.1| (NC_003030) RecF, ABC family ATPase [Clost... 51 2e-05
ref|NP_268132.1| (NC_002662) RecF protein [Lactococcus lact... 51 2e-05
ref|NP_623604.1| (NC_003869) ATPase involved in DNA repair ... 50 5e-05
ref|NP_343649.1| (NC_002754) Conserved hypothetical protein... 49 7e-05
ref|NP_377543.1| (NC_003106) 417aa long hypothetical protei... 49 7e-05
ref|NP_044137.1| (NC_001732) M. jannaschii predicted coding... 49 9e-05
ref|NP_653959.1| (NC_003995) RecF, RecF protein [Bacillus a... 49 1e-04
ref|NP_394249.1| (NC_002578) chromosome segregation protein... 47 4e-04
ref|NP_377926.1| (NC_003106) 354aa long hypothetical protei... 47 4e-04
ref|NP_470176.1| (NC_003212) some similarities to hypotheti... 47 5e-04
ref|NP_469352.1| (NC_003212) RecF protein [Listeria innocua... 46 6e-04
ref|NP_602913.1| (NC_003454) RECF protein [Fusobacterium nu... 46 6e-04
ref|NP_463538.1| (NC_003210) RecF protein [Listeria monocyt... 46 6e-04
ref|NP_006435.1| (NM_006444) SMC2 structural maintenance of... 46 8e-04
ref|XP_050024.1| (XM_050024) similar to SMC2 structural mai... 46 8e-04
pir||T30534 chromosome segregation protein SMC1 homolog - J... 46 8e-04
gb|AAC26807.1| (AF051784) 14S cohesin SMC1 subunit; SMC pro... 45 0.001
ref|NP_070387.1| (NC_000917) chromosome segregation protein... 45 0.001
dbj|BAB31946.1| (AK019977) data source:SPTR, source key:O95... 45 0.001
dbj|BAB28654.1| (AK013109) data source:SPTR, source key:O95... 45 0.001
ref|NP_037556.1| (NC_001277) unknown [Pediococcus pentosace... 45 0.001
ref|NP_491486.1| (NM_059085) F28B3.7.p [Caenorhabditis eleg... 45 0.001
sp|P50533|XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E >gi... 45 0.001
pir||T34063 chromosome segregation protein smc1 F28B3.7 [si... 45 0.001
ref|NP_387885.1| (NC_000964) recF [Bacillus subtilis] >gi|1... 45 0.001
ref|NP_617057.1| (NC_003552) hypothetical protein (multi-do... 45 0.002
ref|NP_069865.1| (NC_000917) purine NTPase, putative [Archa... 45 0.002
ref|NP_560920.1| (NC_003366) DNA repair and genetic recombi... 45 0.002
sp|Q90988|SCII_CHICK CHROMOSOME SCAFFOLD PROTEIN SCII >gi|1... 44 0.002
pir||A64505 P115 homolog - Methanococcus jannaschii 44 0.003
ref|NP_248653.1| (NC_000909) chromosome segretation protein... 44 0.003
ref|NP_596049.1| (NC_003423) Xenopus 14s cohesin smc1 subun... 44 0.003
ref|NP_142852.1| (NC_000961) purine NTPase [Pyrococcus hori... 44 0.004
dbj|BAB31016.1| (AK017948) SMC (structural maintenance of c... 43 0.007
ref|XP_050403.1| (XM_050403) similar to SMC1 (structural ma... 43 0.007
ref|NP_006297.1| (NM_006306) SMC1 (structural maintenance o... 43 0.007
ref|NP_622332.1| (NC_003869) predicted ATP-dependent endonu... 43 0.007
ref|NP_113871.1| (NM_031683) segregation of mitotic chromos... 43 0.007
ref|NP_062684.1| (NM_019710) SMC (segregation of mitotic ch... 43 0.007
ref|XP_125458.1| (XM_125458) SMC (structural maintenance of... 43 0.007
dbj|BAB28937.1| (AK013648) SMC (structural maintenance of c... 43 0.007
ref|NP_562731.1| (NC_003366) DNA repair and genetic recombi... 43 0.007
gb|AAD13141.1| (AF072712) SMC1 protein [Bos taurus] 43 0.007
ref|NP_485171.1| (NC_003272) chromosome segregation protein... 42 0.009
ref|NP_343125.1| (NC_002754) Hypothetical protein [Sulfolob... 42 0.009
>ref|NP_207870.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64654 hypothetical protein HP1079 - Helicobacter pylori (strain 26695)
gb|AAD08125.1| (AE000614) H. pylori predicted coding region HP1079 [Helicobacter
pylori 26695]
Length = 370
Score = 739 bits (1909), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY
Sbjct: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT
Sbjct: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
Query: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLP 180
AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLP
Sbjct: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLP 180
Query: 181 FESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLK 240
FESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLK
Sbjct: 181 FESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLK 240
Query: 241 VKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDFI 300
VKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDFI
Sbjct: 241 VKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDFI 300
Query: 301 NNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLFCLKQDDQYVIPRTYYGENLEY 360
NNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLFCLKQDDQYVIPRTYYGENLEY
Sbjct: 301 NNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLFCLKQDDQYVIPRTYYGENLEY 360
Query: 361 YFENEENLFG 370
YFENEENLFG
Sbjct: 361 YFENEENLFG 370
>ref|NP_223065.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71943 hypothetical protein jhp0346 - Helicobacter pylori (strain J99)
gb|AAD05921.1| (AE001470) putative [Helicobacter pylori J99]
Length = 381
Score = 675 bits (1742), Expect = 0.0
Identities = 336/370 (90%), Positives = 353/370 (94%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MIQSVRIKNFK FK+T+IDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY
Sbjct: 1 MIQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
DNIRKEPLTSESK+LMFYGLDT+++IQI TTLDNNQTLDLQIKFIA+ENQKVIESQIIPT
Sbjct: 61 DNIRKEPLTSESKNLMFYGLDTEKKIQITTTLDNNQTLDLQIKFIANENQKVIESQIIPT 120
Query: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLP 180
AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFD NQLQKLLP
Sbjct: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDPNQLQKLLP 180
Query: 181 FESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLK 240
FESA IIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQ+ISFNTNNQLKLK
Sbjct: 181 FESATIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQSISFNTNNQLKLK 240
Query: 241 VKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDFI 300
VK+IKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRM LLL+ IDFI
Sbjct: 241 VKNIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMELLLRCVIDFI 300
Query: 301 NNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLFCLKQDDQYVIPRTYYGENLEY 360
N+NKDGNLQVFMTTH+QEFIEILDQVIREKDFAHQTKLFCL+Q + ++ YYGENL
Sbjct: 301 NDNKDGNLQVFMTTHNQEFIEILDQVIREKDFAHQTKLFCLEQYNGSIVAEPYYGENLSL 360
Query: 361 YFENEENLFG 370
YF+N NLFG
Sbjct: 361 YFKNSANLFG 370
>ref|NP_224181.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71803 hypothetical protein jhp1463 - Helicobacter pylori (strain J99)
gb|AAD07038.1| (AE001568) putative [Helicobacter pylori J99]
Length = 367
Score = 114 bits (286), Expect = 1e-24
Identities = 101/341 (29%), Positives = 166/341 (48%), Gaps = 46/341 (13%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI- 59
MI+SV I+N+KNF++ K++ F +N TGQN+AGK+NLLEALY G P N + +
Sbjct: 1 MIKSVEIENYKNFEHLKMENFKLINFFTGQNDAGKTNLLEALYTNTG-LCDPTANQVSLP 59
Query: 60 ------YDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVI 113
RK L +++ FY +T I I T + + T+ L I++ Q
Sbjct: 60 PEHAVNISEFRKIKLDADNLKTFFYQGNTANPISIRTEFE-HATIPLTIQY---PTQTSY 115
Query: 114 ESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSN 173
I ++ M++ +N T+ K L + P+ P+ + RQ +
Sbjct: 116 SKDINLNSDDAHMTNLINTTITK-------PQLQFSYNPSLSPMTMTYEFERQNLGLIHS 168
Query: 174 QLQKLLPF--ESAVIIPSDVVYRQAHMIQAVSKICSNNQL---EEELNKHLNQFDNNIQA 228
L K+ E+A+ IP ++ I K N QL E+EL + L F+ NI
Sbjct: 169 NLDKIAQTYKENAMFIPIEL------SIVNSLKALENLQLASKEKELIEILQCFNPNI-- 220
Query: 229 ISFNT-NNQLKLKVKDIKEKVP--------LSVFGDGLKKYLHIVSAFMADNAKTIYIDE 279
++ NT + +++KD E P L++FG G K+ +VS + + K ++IDE
Sbjct: 221 LNANTIRKSVYIQIKD--ENTPLEESPKRLLNLFGWGFIKFFIMVSILIDNRVKYLFIDE 278
Query: 280 VENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFI 320
+E+GLH ++M+ LK + +Q+F TTH++EF+
Sbjct: 279 IESGLHHTKMQEFLKALFKLAQKLQ---IQIFATTHNKEFL 316
>ref|NP_375999.1| (NC_003106) 339aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65108.1| (AP000981) 339aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 339
Score = 75.5 bits (184), Expect = 9e-13
Identities = 82/346 (23%), Positives = 154/346 (43%), Gaps = 55/346 (15%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MI + I+NF+ K K++ +++NI+ G+NN+GKS +LEA+Y++ +++ E Y
Sbjct: 1 MINEIEIQNFRGIKYCKLESLSQINILIGRNNSGKSTILEAIYFI--------SSLDEQY 52
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
D +RK ++ L L+ K + I + + + S N S I
Sbjct: 53 DKVRK---INKIDYLTRRRLEEKTKENIKKNITS---------ILKSGNLITFSSSI--- 97
Query: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLP 180
T + SQ + KN + ++N + + S Y+ + D N ++
Sbjct: 98 --NTDIFSQFFYNFNKNEKIVFNVN------------ADNSTYSIEITYKDENHIELKTS 143
Query: 181 ------FESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHL-NQFDNNIQAISFNT 233
F++ V I ++ Q + I + ++ N + ++E+ K L +F+ + + I F+
Sbjct: 144 NNVSEVFKNTVFIDDNLSISQLYDI--IGELKRNKRKDKEIVKLLKEEFEVDAEGIEFSR 201
Query: 234 ---NNQLKLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTI-YIDEVENGLHFSRM 289
+ L L +KD +P+ GDG K + I S + + K I I+E E H +
Sbjct: 202 YLGDFVLSLTLKD--TSIPIDFLGDGAKLAVLISSILLYFDGKGIALIEEPEVHEHPGGI 259
Query: 290 RLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQ 335
+L K+ +Q F+TTHS + I ++ ++ D Q
Sbjct: 260 YTILDLAFKIA---KEKGIQFFITTHSSDVINYSLRIAKKIDLKTQ 302
>ref|NP_377996.1| (NC_003106) 382aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB67105.1| (AP000988) 382aa long hypothetical protein [Sulfolobus tokodaii]
Length = 382
Score = 73.6 bits (179), Expect = 4e-12
Identities = 94/349 (26%), Positives = 156/349 (43%), Gaps = 48/349 (13%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MI+ + IKNFK++++ + + F K+N++ G N +GK+NL++A +L + + P + Y
Sbjct: 15 MIKRLAIKNFKSYRDAEFE-FGKVNVVVGPNGSGKTNLVDAFSFLK-QLIRPLS--YPPY 70
Query: 61 DNIRKEPLTSESKSLMFY---GLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQI 117
IR + K+++F LD EI N + S N I+ +I
Sbjct: 71 PFIR----WGDYKNVIFMQDENLDISFEI-------NGTYKSKDYHYEVSLNNLQIKKEI 119
Query: 118 IPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAK------VPNFPPIPNQS-GYNRQFKNF 170
I A T + + N +N E + +L++ +PN I N + +F +F
Sbjct: 120 INFASHT-IERENNVIRYENKEVTISQNLSVFNLFVSQIIPNITIIYNLNFPLPGEFIDF 178
Query: 171 DSNQLQKLLPFE---SAVIIPSDVVYRQA--HMIQAVSKICSNNQ---LEEELNKHLNQF 222
+N L + F + P + +A + + K+ +NN +E E K L+ F
Sbjct: 179 MTNFLNDIGVFRIVPQIAVSPVHFTFPEAVDENGRGLVKVIANNLTKIIESENMKPLHDF 238
Query: 223 --DNNIQAIS-FNTNNQLKLKVKDIKEK----VPLSVFGDGLKKYLHIVSAFMADNAKTI 275
+NNI F + ++L + E +P S DG K L I+ A TI
Sbjct: 239 LNENNISLRPVFTEDGNIRLYFVEKSENRELILPPSSVSDGFIKMLTILVAVYLLGLSTI 298
Query: 276 YIDEVENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILD 324
IDE+EN LH ++N ID + + N Q MTTHS I+ +D
Sbjct: 299 VIDEIENSLHLR----YIENLIDVM---RYSNTQFIMTTHSPLIIDFMD 340
>ref|NP_343394.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK42184.1| (AE006806) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 328
Score = 64.7 bits (156), Expect = 2e-09
Identities = 91/344 (26%), Positives = 153/344 (44%), Gaps = 43/344 (12%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MI+ ++IKNFK++++++ + F K++I+ G N +GK+NL++A +L + + P + Y
Sbjct: 1 MIKRLKIKNFKSYRDSEFE-FEKVSIVVGPNGSGKTNLVDAFSFLK-QLIRPLS--YPPY 56
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
IR + K+++F E + I +D + S N+ I+ +II
Sbjct: 57 PFIR----WGDYKNVVFM---QDENLDISFEIDGEYK-GKDYHYEISLNKLQIKKEII-N 107
Query: 121 AEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFK------NFDSNQ 174
+ M + N +N E D+L++ + F P YN F NF +N
Sbjct: 108 FDSYSMERRGNVIRYENKEMTIPDNLSVFNL--FFAQPFIIAYNLNFTLPPELLNFMTNF 165
Query: 175 LQKLLPFE---SAVIIPSDVVYRQA--HMIQAVSKICSNNQLEEELNKHLNQF--DNNIQ 227
L + F + P + +A + + K+ SNN K + F +NNI
Sbjct: 166 LNDVGVFRIVPQIAVSPVHFTFPEALDENGRGLVKVISNNLSRINETKQVYDFLVENNIS 225
Query: 228 AIS-FNTNNQLKL----KVKDIKEKV--PLSVFGDGLKKYLHIVSAFMADNAKTIYIDEV 280
F + ++L K ++ KE + P SV DG K L I+ A TI IDE+
Sbjct: 226 LRPVFTEDGNIRLHFIEKSENNKELILLPASV-PDGFIKMLTIIIAVYLLKMSTIIIDEI 284
Query: 281 ENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILD 324
EN LH LK ++ + + Q TTHS I+ +D
Sbjct: 285 ENSLH-------LKYIERLVDIMRYSDSQFIATTHSPLIIDFMD 321
>ref|NP_142158.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||A71237 hypothetical protein PH0155 - Pyrococcus horikoshii
dbj|BAA29224.1| (AP000001) 317aa long hypothetical protein [Pyrococcus horikoshii]
Length = 317
Score = 62.8 bits (151), Expect = 6e-09
Identities = 71/333 (21%), Positives = 146/333 (43%), Gaps = 57/333 (17%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
MI S+R++ F+ K ++ ++N+I G+NN+GKS LLEAL +G S P T +
Sbjct: 1 MIDSIRVEGFRGLKELELSSLRRINVIVGRNNSGKSTLLEALSLFLGSS-DPGT-----F 54
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
N+ E L +YG+ T +++ + F S K +E+
Sbjct: 55 GNVLHEILIWRG----WYGIQTVDDL----------FYNGGDSFSISSTGKTLEA----- 95
Query: 121 AEQTQMSSQLNFTLKKNNEEIYN-DHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLL 179
++S+ + K N E Y D +I ++ + + L +
Sbjct: 96 -----LNSKHSLEFKLNGEPFYKIDRESIRRLAS-----------------QAVLLARFS 133
Query: 180 PFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAIS-FNTNNQLK 238
P E+ + + + +R+ +++ ++ ++ K LN+ ++ S +
Sbjct: 134 PKENFEFL-TPLTFRRFGYAESLYSYAYERKVVKDSIKVLNEAYPEVEGFSPLLKEDNWV 192
Query: 239 LKVKDIKEKVPLSVFGDGLKKYLHI--VSAFMADNAKTIYIDEVENGLHFSRMRLLLKNT 296
L V+ P + G+G K + I +S+ + D + ID E H ++++++
Sbjct: 193 LYVETKYGVYPYYLMGEGFKSAMIISFLSSLLRDG--VLLIDSAEAFHHPKSLKVMIQT- 249
Query: 297 IDFINNNKDGNLQVFMTTHSQEFIEILDQVIRE 329
+ ++ N+QVF+TTHS E ++++ ++ R+
Sbjct: 250 --LVRGSEKNNVQVFLTTHSLELLDLMLEMGRD 280
>ref|NP_377073.1| (NC_003106) 352aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB66182.1| (AP000985) 352aa long hypothetical protein [Sulfolobus tokodaii]
Length = 352
Score = 62.8 bits (151), Expect = 6e-09
Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 44/336 (13%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYY---LVGK--SMHPCTN 55
MI+ + I+NFK+ +N KI+ K+N++ G N +GK+ ++E+L LV K M P
Sbjct: 1 MIRELSIQNFKSLENVKIE-LGKINVLVGPNGSGKTAIIESLLLIRNLVSKILGMSPF-G 58
Query: 56 VLEIYDNI-----RKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQ 110
+ YDN+ + E S FY L + V + + L+L+ SE++
Sbjct: 59 LWWGYDNVVFSKDLGRNIVIEINSDEFYYLLEVHRERFVKEILMMKDLNLE----RSEDK 114
Query: 111 KVIESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHL-NIAKVPNFPPIPNQSGYN--RQF 167
+I ++ K NEE +L N+A++P + S YN
Sbjct: 115 VIINNE----------------EYKGLNEEYSALNLVNLARLPRDKVMVLNSVYNFLTGI 158
Query: 168 KNFDSNQLQKLLPFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQ 227
+ + + P ++ I D+ R M++ + + S L +++ L + +I
Sbjct: 159 MVLRVDPYEAISPIHASEITAIDINGRG--MVKVLHNLYSEGNLPGYIDEFLKEEGYSI- 215
Query: 228 AISFNTNNQLKLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFS 287
+ + + L V D VP GL K L I++A +A K + IDEVEN LH
Sbjct: 216 SFKLSDEGNVILYVNDHGVIVPPPSVPSGLIKMLTIMTA-LALKPKILAIDEVENSLHLK 274
Query: 288 RMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEIL 323
+ LL + D+ +N + Q+ ++THS I+++
Sbjct: 275 YIERLL-DVFDYFSN----DTQIILSTHSPAVIDLV 305
>ref|NP_395960.1| (NC_003064) AGR_pAT_32p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK90401.1| (AE007875) AGR_pAT_32p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 622
Score = 59.7 bits (143), Expect = 5e-08
Identities = 79/344 (22%), Positives = 145/344 (41%), Gaps = 41/344 (11%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
+ S++IKNF+ F T I + LN+I G NN GKS +++AL L+ + P D
Sbjct: 48 LASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDALRSLLAGADDPYPRF--TVD 105
Query: 62 NIRKEPLTSESKSLMFY----GLDTKEEIQIVTTL----DNNQTLDLQIKF-IASENQKV 112
+I L S ++F LD +E + L DN L + F A ++ ++
Sbjct: 106 DIHVPKLGEASGDIVFEFIFDDLDGNDEADFIHALREKPDNKLEAVLNVAFGDADKSGRL 165
Query: 113 IESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDS 172
+ E+ MSS ++ N +Y PP+ + R +N
Sbjct: 166 RPRRWCGAFEEVSMSS----SMLDNLRSVY-----------LPPLRDAEQGLRPSRNSQL 210
Query: 173 NQLQKLLPFESAV------IIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNI 226
++L LL E+ + D ++ +++ S E L + L Q N
Sbjct: 211 SRLLHLLTDETGKEEVALHLKDLDAKLKELQVLKDAQSAVSGRH-ETMLGERLAQVLN-- 267
Query: 227 QAISFNTNNQLKLKVKDIKEKVPLSVFGDGLKK--YLHIVSAFMADNA----KTIYIDEV 280
++ + ++L ++ + + + G G ++ +V + ++ NA +++ ++E
Sbjct: 268 VGLTGSDFSKLAARLSLLVDTFEIERNGLGYNNLIFMAVVLSELSKNAEASFRSLIVEEP 327
Query: 281 ENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILD 324
E LH +LLK N + ++QVF+T+HS F I D
Sbjct: 328 EAHLHPQLQAVLLKYLSSIQNGVGERDVQVFVTSHSPNFASIAD 371
>ref|NP_535400.1| (NC_003306) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (Dupont)] [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45716.1| (AE008928) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 577
Score = 59.7 bits (143), Expect = 5e-08
Identities = 79/344 (22%), Positives = 145/344 (41%), Gaps = 41/344 (11%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
+ S++IKNF+ F T I + LN+I G NN GKS +++AL L+ + P D
Sbjct: 3 LASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDALRSLLAGADDPYPRF--TVD 60
Query: 62 NIRKEPLTSESKSLMFY----GLDTKEEIQIVTTL----DNNQTLDLQIKF-IASENQKV 112
+I L S ++F LD +E + L DN L + F A ++ ++
Sbjct: 61 DIHVPKLGEASGDIVFEFIFDDLDGNDEADFIHALREKPDNKLEAVLNVAFGDADKSGRL 120
Query: 113 IESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDS 172
+ E+ MSS ++ N +Y PP+ + R +N
Sbjct: 121 RPRRWCGAFEEVSMSS----SMLDNLRSVY-----------LPPLRDAEQGLRPSRNSQL 165
Query: 173 NQLQKLLPFESAV------IIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNI 226
++L LL E+ + D ++ +++ S E L + L Q N
Sbjct: 166 SRLLHLLTDETGKEEVALHLKDLDAKLKELQVLKDAQSAVSGRH-ETMLGERLAQVLN-- 222
Query: 227 QAISFNTNNQLKLKVKDIKEKVPLSVFGDGLKK--YLHIVSAFMADNA----KTIYIDEV 280
++ + ++L ++ + + + G G ++ +V + ++ NA +++ ++E
Sbjct: 223 VGLTGSDFSKLAARLSLLVDTFEIERNGLGYNNLIFMAVVLSELSKNAEASFRSLIVEEP 282
Query: 281 ENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILD 324
E LH +LLK N + ++QVF+T+HS F I D
Sbjct: 283 EAHLHPQLQAVLLKYLSSIQNGVGERDVQVFVTSHSPNFASIAD 326
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 57.0 bits (136), Expect = 3e-07
Identities = 74/333 (22%), Positives = 148/333 (44%), Gaps = 55/333 (16%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
+I+ V+++N+++ NT ++ +N+I G+N GK+++LEA+ T +
Sbjct: 2 IIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAI----------STVMFNTK 51
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
D KE KS + +G + ++ I ++ + +L+ +F ++ +K + +
Sbjct: 52 DRTGKE----TGKSYIKFG-EKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGS 106
Query: 121 AEQTQMSSQLN--FTLKKNNEEIY--------NDHLNI--AKVPN----FPPIPNQSGYN 164
+ +L +KK EE Y N+ +NI AK N F I N Y
Sbjct: 107 EYDGDIQEKLEELCGIKKGFEETYENIVIAKQNEFINIFKAKPKNREEIFNKIFNTQIYK 166
Query: 165 RQFKNFDSNQLQKLLPFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDN 224
+ +F + K E + ++ + + +M + +I + + E+EL K+L
Sbjct: 167 EMYDSFLKEAVDKYK--EKIKDLDKEITFLKENM-EDKEQITNFLKEEKELEKNLQDRFK 223
Query: 225 NIQAISFNTNNQLK----------LKVKDIKEKVPLSVFGDGLKKYL-----HIVSAFMA 269
NI +S N N++K VK+IK++ + +KKYL +I+ A A
Sbjct: 224 NINVVSKNLENEIKDYETTEIELNNLVKNIKDE------ENKIKKYLNILKENIIEAKQA 277
Query: 270 DNAKTIYIDEVENGLHFSRMRLLLKNTIDFINN 302
+K I + ++ L + + LK+ + ++N
Sbjct: 278 KKSKIIVKETEKSYLEYLEIENRLKDLRENLDN 310
>ref|NP_378240.1| (NC_003106) 494aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB67349.1| (AP000989) 494aa long hypothetical protein [Sulfolobus tokodaii]
Length = 494
Score = 55.1 bits (131), Expect = 1e-06
Identities = 70/321 (21%), Positives = 131/321 (40%), Gaps = 50/321 (15%)
Query: 7 IKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKE 66
+ NF++ N +++ LN+I G N GK+NLL A+Y + K+++ I D
Sbjct: 8 VDNFRSLSNIRLEDLGGLNVIVGYNGYGKTNLLTAIYLFI-KNLNAGIEKRSIEDR---- 62
Query: 67 PLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPTAEQTQM 126
+ L++ D + I I I+F E QK I + ++
Sbjct: 63 ---DQEYMLLWRDYDITKPISIGGV----------IEFSEEEVQKSI-------GKSQKL 102
Query: 127 SSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLPFESAVI 186
++ L+ NN I L V N PP +Q F+ + L +S
Sbjct: 103 RVEVVNKLRYNNRFI-EWSLESFSVNNSPPTRDQ---------FEEVKSLFSLASQSVEY 152
Query: 187 IPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDN-------NIQAISFNTNNQLKL 239
+P ++ Q + + K+ N+ + + F N I+ I F + +L L
Sbjct: 153 VP---IFDQTYFDAILKKMIEMNRSPINMRRKWYDFVNLIGEVIPEIKGIEFWDSGKLVL 209
Query: 240 KVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDF 299
++++ + L+ G ++ + ++ K + ++E E ++ + ++K D+
Sbjct: 210 NIQNLPIYIDLA--ASGFQRVILMLFILWLSGRKILLLEEPEVNMYPTLQSRIMKLIKDW 267
Query: 300 INNNKDGNLQVFMTTHSQEFI 320
NNN QVF+TTHS I
Sbjct: 268 TNNNV---FQVFITTHSPYII 285
>ref|NP_346635.1| (NC_003028) recF protein [Streptococcus pneumoniae TIGR4]
sp|Q97N44|RECF_STRPN DNA replication and repair protein recF
gb|AAK76275.1| (AE007510) recF protein [Streptococcus pneumoniae TIGR4]
Length = 365
Score = 52.8 bits (125), Expect = 6e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMH 51
+Q + +K F+N+K TKID KLN+ G+N GK+N+LEA+Y+L H
Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSH 52
>ref|NP_359623.1| (NC_003098) Recombination protein RecF [Streptococcus pneumoniae
R6]
gb|AAL00834.1| (AE008567) Recombination protein RecF [Streptococcus pneumoniae
R6]
Length = 365
Score = 52.8 bits (125), Expect = 6e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMH 51
+Q + +K F+N+K TKID KLN+ G+N GK+N+LEA+Y+L H
Sbjct: 3 LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSH 52
>gb|EAA02652.1| (AAAB01006115) ebiP334 [Anopheles gambiae str. PEST]
Length = 351
Score = 51.6 bits (122), Expect = 1e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49
+IQS+R+ NFKN + D ++N G N GK+N+L+ALYYL VGKS
Sbjct: 2 LIQSIRLNNFKNHAFRQFDFSPQINCFVGNNGVGKTNILDALYYLSVGKS 51
>sp|P50925|RECF_LACLC DNA replication and repair protein recF
pir||JC4753 RecF protein - Lactococcus lactis
emb|CAA61549.1| (X89367) recF [Lactococcus lactis]
Length = 357
Score = 50.8 bits (120), Expect = 2e-05
Identities = 34/123 (27%), Positives = 61/123 (48%), Gaps = 10/123 (8%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
++++ +KNF+N++ K+D LNI GQN GK+N+LEA+++L H ++ E+
Sbjct: 3 LKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELIS 62
Query: 62 NIRKEPLTS------ESKSLMFYGLDTKEEIQIVTTLDNNQTLD----LQIKFIASENQK 111
++E S + + L K I L N+ D L+I A EN +
Sbjct: 63 WSQQEMKVSGVGEKAHATIPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLE 122
Query: 112 VIE 114
+++
Sbjct: 123 LVK 125
>ref|NP_346651.1| (NC_003030) RecF, ABC family ATPase [Clostridium acetobutylicum]
sp|Q97N32|RECF_CLOAB DNA replication and repair protein recF
gb|AAK77991.1|AE007513_4 (AE007513) RecF, ABC family ATPase [Clostridium acetobutylicum]
Length = 363
Score = 50.8 bits (120), Expect = 2e-05
Identities = 84/390 (21%), Positives = 166/390 (42%), Gaps = 61/390 (15%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKSMHPCTNVLEIY 60
I+++ + NF+N+ N +ID K+NI+TG N GK+N+LE+++Y +GKS H E+
Sbjct: 3 IKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGKS-HRTNKDKELI 61
Query: 61 D----------NIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDL-QIKFIASEN 109
N+ ++PL + + +F G I + ++ + + + E+
Sbjct: 62 KWDKDEAFIRLNLSRKPLDKKIEIKIFKGGKKGININSIKLKKISELFGIFNVVMFSPED 121
Query: 110 QKVIESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKN 169
K+++ P + + +++ DH K+ + I +Q + K
Sbjct: 122 LKIVKES--PGHRRKFLDMEISKL----------DHRYYYKLVQYNKILDQRNIMLRNKK 169
Query: 170 FDSNQL-----QKLLPFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDN 224
F +N + ++L F S++I S+I N+L E+ +
Sbjct: 170 FLNNDMISVYDEQLSKFGSSLI---------------ESRIKYLNKLNEKGKIIHSDITK 214
Query: 225 NIQAISFNTNNQLKLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMAD-----NAKTIYIDE 279
+ I F +K + ++I E++ S+F D K+ + + + + K ID
Sbjct: 215 GKEEIEFTYLTHVKGR-ENISEEL-FSLFKDSYKRDVEKGNTSVGPHRDDFSIKINGIDA 272
Query: 280 VENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLF 339
G + +L TI F ++Q+ S+ + +LD V+ E D + Q +
Sbjct: 273 RSFGSQGQQRTSVL--TIKF------ASIQIIKEISSETPVLLLDDVLSELDESRQEYIL 324
Query: 340 CLKQDDQYVIPRTYYGENLEYYFENEENLF 369
+ Q +I T G+ +E Y +N+ N+F
Sbjct: 325 NSLEGIQTLITCTGIGD-IEKYLKNDFNVF 353
>ref|NP_268132.1| (NC_002662) RecF protein [Lactococcus lactis subsp. lactis]
sp|Q9CE70|RECF_LACLA DNA replication and repair protein recF
gb|AAK06073.1|AE006427_8 (AE006427) RecF protein [Lactococcus lactis subsp. lactis]
Length = 358
Score = 50.8 bits (120), Expect = 2e-05
Identities = 34/123 (27%), Positives = 61/123 (48%), Gaps = 10/123 (8%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
++++ +KNF+N++ K+D LNI GQN GK+N+LEA+++L H ++ E+
Sbjct: 3 LKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELIS 62
Query: 62 NIRKEPLTS------ESKSLMFYGLDTKEEIQIVTTLDNNQTLD----LQIKFIASENQK 111
++E S + + L K I L N+ D L+I A EN +
Sbjct: 63 WSQQEMKVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLE 122
Query: 112 VIE 114
+++
Sbjct: 123 LVK 125
>ref|NP_623604.1| (NC_003869) ATPase involved in DNA repair [Thermoanaerobacter
tengcongensis]
gb|AAM25208.1| (AE013153) ATPase involved in DNA repair [Thermoanaerobacter
tengcongensis]
Length = 549
Score = 49.7 bits (117), Expect = 5e-05
Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 12/234 (5%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEAL-YYLVGKSMHPCTNVLEI 59
+I+S+ +KNFK+ KNT I+ K +I G N GK+++ EA+ + L G ++ NV
Sbjct: 2 IIKSITLKNFKSHKNTIINFNDKNTVIYGDNGTGKTSIGEAIAWCLTGANLFGTENVTNK 61
Query: 60 YDNIRKEPLT------SESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVI 113
I K ++ + K K EI+I + +DL +F+ +++ +
Sbjct: 62 LVTIGKNEMSVTLVIEKDGKEYEITRSKKKNEIEITINGVKSTQIDLYTQFV--QDKDIF 119
Query: 114 ESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSN 173
+ P T L K E+ N+ + P ++G+N F
Sbjct: 120 FTVFNPLYFTTLAPRDAKAILYKVLPEVSNEEVFEKLSPEVAETLKKNGFNNA-NTFIEK 178
Query: 174 QLQKLLPFESAVIIPSDVVYRQAHMIQA-VSKICSNNQLE-EELNKHLNQFDNN 225
Q + L +E ++ + +I A + ++ S ++ + +EL K L +F N
Sbjct: 179 QREILKDWEDGLLKSEGNIEILRQIINAKIPEMKSFDETQLKELEKKLMEFQKN 232
>ref|NP_343649.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK42439.1| (AE006831) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 495
Score = 49.3 bits (116), Expect = 7e-05
Identities = 62/325 (19%), Positives = 135/325 (41%), Gaps = 54/325 (16%)
Query: 7 IKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKE 66
+ NF++ + NI+ G N GK+NLL +++ V K++ I D
Sbjct: 8 VSNFRSLSEVNLKDLGGFNIVVGYNGYGKTNLLSSIFLFV-KNLSAGIEKRSIEDR---- 62
Query: 67 PLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPTAEQTQM 126
++ L++ G D + I I +++F E+ K++ + ++
Sbjct: 63 ---NQEFILLWQGYDVSKPIMI----------GGKVEFSPEESNKIV-------GKNQKI 102
Query: 127 SSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLPFESAVI 186
+ ++ ++ NN+ + +L+ + PP + D +KL + S I
Sbjct: 103 TLEIINKMRYNNKFV-EWNLDTLYINGSPPGED-----------DLKVAKKLAEYASQAI 150
Query: 187 --IPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDN-------NIQAISFNTNNQL 237
+P ++ Q + + + ++ N+ L K+ F N ++ + F +L
Sbjct: 151 EYVP---IFDQTYFDETLKRMTEMNKSPINLRKYWYDFVNLVAATIPEVKGMEFWDGRRL 207
Query: 238 KLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTI 297
L V ++ + L+ G ++ + ++ K + I+E E +H + ++K
Sbjct: 208 VLNVYNLPIYIDLA--ASGFQRVILMLFIIWLSGNKILLIEEPEVNMHPTLQAKIMKLIK 265
Query: 298 DFINNNKDGNLQVFMTTHSQEFIEI 322
++ +NN LQ F+TTHS +E+
Sbjct: 266 NWTDNN---ILQSFLTTHSPYIVEM 287
>ref|NP_377543.1| (NC_003106) 417aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB66652.1| (AP000986) 417aa long hypothetical protein [Sulfolobus tokodaii]
Length = 417
Score = 49.3 bits (116), Expect = 7e-05
Identities = 91/395 (23%), Positives = 161/395 (40%), Gaps = 66/395 (16%)
Query: 4 SVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHP-----CTNVLE 58
++ IK F F NT ++ L I G+N+ GKS +L L+ L S P +
Sbjct: 4 TLTIKEFGPFNNTSLE-LKPLTIFIGKNSLGKSLILRLLWSL--SSAEPDYKEFSKEFMR 60
Query: 59 IYDNIRKEPLTSESKSL---------------MFYGLDTK-EEIQIVTTLDNNQTLDLQI 102
+ R+E L+ + K + G+ K +EI T + T +L
Sbjct: 61 LGGYSRRENLSLKDKEAIKDYVNVYMKAFSFSLLKGIQNKIKEIFGKTEGEIEVTSELAN 120
Query: 103 KFIASENQKVIESQIIPTAE-QTQMSSQLNFTLK-----------KNNEEIYNDHLNIAK 150
+++E Q ++E + + S LN K K EE+ +D L+++
Sbjct: 121 IKVSTEGQSILEPSLDKLIDIDINTISPLNIVFKFKDVEKSEYYVKTKEEL-DDALDLSL 179
Query: 151 V----PNFPPIPNQSGYNRQF--------KNFDSNQLQKLLPFESAVIIPSDVVYRQAHM 198
+ F P Q+ NR F F + + K L F II + + + +
Sbjct: 180 LYFTYSRFEPF-FQADTNRIFLIDGRAGLTRFFNLKFLKTLDFLD--IISKEYLSSYSLL 236
Query: 199 IQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLKVKDIKEKVPLSVFGDGLK 258
++ SK + L ++ N+ +++ I +K+ + + +PLS G++
Sbjct: 237 LEDFSKGKVDFNLIKDF---FNELGFDLKLIETEGIKSPYVKMWN-EVTLPLSEAPSGIR 292
Query: 259 KYLHIVSAFMADNAKTIYIDEVENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQE 318
+ L I A + IYI+E E LH R++ K D + N K VF+TTHS
Sbjct: 293 EALPITLALASKEVSVIYIEEPEAHLHPKAQRIMAKMISDAVKNGK----YVFLTTHSDY 348
Query: 319 FIEILDQVIR-----EKDFAH-QTKLFCLKQDDQY 347
+ + +I +K H + ++ LK+D +Y
Sbjct: 349 LLYSISNLIAMSQKDKKGLDHNKVAVYLLKRDGEY 383
>ref|NP_044137.1| (NC_001732) M. jannaschii predicted coding region MJECL10
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
sp|Q60272|YZ10_METJA Hypothetical protein MJECL10
pir||B64511 hypothetical protein MJECL10 - Methanococcus jannaschii plasmid
pURB800
gb|AAC37083.1| (L77118) M. jannaschii predicted coding region MJECL10
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
Length = 219
Score = 48.9 bits (115), Expect = 9e-05
Identities = 20/42 (47%), Positives = 32/42 (75%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEAL 42
MI+++ IKNF+ + K++ ++NII G+NNA KS++LEAL
Sbjct: 11 MIETIHIKNFRGIRELKLENLGQINIIAGKNNASKSSILEAL 52
>ref|NP_653959.1| (NC_003995) RecF, RecF protein [Bacillus anthracis A2012]
[Bacillus anthracis str. A2012]
Length = 375
Score = 48.5 bits (114), Expect = 1e-04
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
I +++KN++N++ ++ K+N+I G+N GK+NL+EA+Y L H +N E+
Sbjct: 3 ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60
>ref|NP_394249.1| (NC_002578) chromosome segregation protein related ptotein
[Thermoplasma acidophilum]
emb|CAC11918.1| (AL445065) chromosome segregation protein related ptotein
[Thermoplasma acidophilum]
Length = 1140
Score = 47.0 bits (110), Expect = 4e-04
Identities = 23/52 (44%), Positives = 37/52 (70%), Gaps = 2/52 (3%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTK-LNIITGQNNAGKSNLLEALYYLVG-KSMH 51
I+ + NFK+F+ K+ FTK LN+I+G N +GKSN+ + L +++G KS+H
Sbjct: 5 IERIEAHNFKSFRRKKVINFTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIH 56
>ref|NP_377926.1| (NC_003106) 354aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB67035.1| (AP000988) 354aa long hypothetical protein [Sulfolobus tokodaii]
Length = 354
Score = 47.0 bits (110), Expect = 4e-04
Identities = 21/45 (46%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL 45
MIQ +R+KNFK+F + +ID K+N++ G N AGKSN ++ +L
Sbjct: 1 MIQWIRVKNFKSFDDLRID-LHKVNVLVGPNGAGKSNFVDVFLFL 44
>ref|NP_470176.1| (NC_003212) some similarities to hypothetical proteins [Listeria
innocua]
emb|CAC96066.1| (AL596166) some similarities to hypothetical proteins [Listeria
innocua]
Length = 369
Score = 46.6 bits (109), Expect = 5e-04
Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 64/356 (17%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
I S+ I K++ ++LN+ +G N+ GKS ++++ + + +YD
Sbjct: 4 ISSLEINGLKSYTEKTEIKLSQLNVFSGVNSVGKSTAIQSI-----------SLIKSLYD 52
Query: 62 N-IRKEPLTSES-KSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIP 119
+ I K + SE+ + +GL+ +I+T NN ++ I N K+I+ I
Sbjct: 53 SYINKNKIISEAFLNNEMFGLELGTYEKIIT--GNNNYFEIGI------NNKLIQ---IE 101
Query: 120 TAEQTQMSSQLNFTLKKNNEEI----YNDHLNIAKVPNFPPIPNQ--SGYNRQFKNFDSN 173
E + Q N +K+ EEI ++ H F P Q Y
Sbjct: 102 AKEGDALKVQAN--MKEVTEEIKVNLFHGHFYYLAAERFGPRNYQVIDSYGIDNCGIKGE 159
Query: 174 QLQKLLPFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNT 233
+L S II D++++ +K + L+++ K LN F + ++ S
Sbjct: 160 NAFHILNKYSENIIADDLLFQ-----GTANK--AEKSLKKQTEKWLNTFFDGVE-FSSTL 211
Query: 234 NNQLKLKVKDIKEK------VPLSVFGDGLKKYLHI-VSAFMADNAKTIYIDEVENGLHF 286
N L+L ++K+ V LS G GL L I ++ + I I+ E LH
Sbjct: 212 ENALRLVKLEVKQSNQDMGYVSLSNVGFGLSYVLPILLTCLTSKEDSLIIIENPEAHLHP 271
Query: 287 SRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTKLFCLK 342
LL + F+ QV + THS+ I + +LFCLK
Sbjct: 272 KGQSLLGQ----FLAQVSSSKRQVVVETHSEHII-------------NGMRLFCLK 310
>ref|NP_469352.1| (NC_003212) RecF protein [Listeria innocua]
sp|Q92FU8|RECF_LISIN DNA replication and repair protein recF
emb|CAC95238.1| (AL596163) RecF protein [Listeria innocua]
Length = 370
Score = 46.2 bits (108), Expect = 6e-04
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTN 55
++S+ ++NF+N++N +++ +N+ G+N GK+NLLEA+ L H TN
Sbjct: 3 LESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTN 56
>ref|NP_602913.1| (NC_003454) RECF protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94212.1| (AE010515) RECF protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 369
Score = 46.2 bits (108), Expect = 6e-04
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYY 44
I ++ NF+N +NT ID K+N+ G+N GK++LLEA+YY
Sbjct: 3 ISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYY 45
>ref|NP_463538.1| (NC_003210) RecF protein [Listeria monocytogenes EGD-e]
sp|Q8YAV8|RECF_LISMO DNA replication and repair protein recF
emb|CAC98220.1| (AL591973) RecF protein [Listeria monocytogenes]
Length = 370
Score = 46.2 bits (108), Expect = 6e-04
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTN 55
++S+ ++NF+N++N +++ +N+ G+N GK+NLLEA+ L H TN
Sbjct: 3 LESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTN 56
>ref|NP_006435.1| (NM_006444) SMC2 structural maintenance of chromosomes 2-like 1;
structural maintenance of chromosomes (SMC) family
member, chromosome-associated protein E; SMC2
(structural maintenance of chromosomes 2, yeast)-like 1
[Homo sapiens]
gb|AAC72360.1| (AF092563) chromosome-associated protein-E [Homo sapiens]
Length = 1197
Score = 45.8 bits (107), Expect = 8e-04
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
I+S+ ++ FK++ + T+++GF L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 IKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNL 62
Query: 60 YDNIRKE---PLTSESKSLMFYGLDTKE 84
D + K +T S S+ F D K+
Sbjct: 63 QDLVYKNGQAGITKASVSITFDNSDKKQ 90
>ref|XP_050024.1| (XM_050024) similar to SMC2 structural maintenance of chromosomes
2-like 1 (yeast); structural maintenance of chromosomes
(SMC) family member, chromosome-associated protein E;
SMC2 (structural maintenance of chromosomes 2,
yeast)-like 1 [Homo sapiens]
Length = 1197
Score = 45.8 bits (107), Expect = 8e-04
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
I+S+ ++ FK++ + T+++GF L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 IKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNL 62
Query: 60 YDNIRKE---PLTSESKSLMFYGLDTKE 84
D + K +T S S+ F D K+
Sbjct: 63 QDLVYKNGQAGITKASVSITFDNSDKKQ 90
>pir||T30534 chromosome segregation protein SMC1 homolog - Japanese pufferfish
gb|AAC15582.1| (AF026198) mitosis-specific chromosome segregation protein SMC1
homolog [Takifugu rubripes]
Length = 1233
Score = 45.8 bits (107), Expect = 8e-04
Identities = 33/138 (23%), Positives = 65/138 (46%), Gaps = 10/138 (7%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F K I G N +GKSNL++A+ +++ + V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAERTSN-LRVKTLK 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
D I P+ + + F + +V D+ L I S ++ I ++++
Sbjct: 63 DLIHGAPVGKPAANRAF--------VSMVYQQDSGDELAFTRVIIGSSSEYRINNKVVGL 114
Query: 121 AEQTQMSSQLNFTLKKNN 138
E ++ +L +K N
Sbjct: 115 PEYSEELEKLGILIKARN 132
>gb|AAC26807.1| (AF051784) 14S cohesin SMC1 subunit; SMC protein [Xenopus laevis]
Length = 1232
Score = 45.4 bits (106), Expect = 0.001
Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPT 120
D I P+ + + F + +V + D+ + + ++ I ++++
Sbjct: 63 DLIHGAPVGKPAANRAF--------VSMVYSEDSGEEKVFSRVIVGGSSEYKINNKVVQL 114
Query: 121 AEQTQMSSQLNFTLKKNN 138
+E + +L +K N
Sbjct: 115 SEYSDSLEKLGILIKARN 132
>ref|NP_070387.1| (NC_000917) chromosome segregation protein (smc1) [Archaeoglobus
fulgidus]
pir||E69444 chromosome segregation protein (smc1) homolog - Archaeoglobus
fulgidus
gb|AAB89690.1| (AE000995) chromosome segregation protein (smc1) [Archaeoglobus
fulgidus]
Length = 1156
Score = 45.4 bits (106), Expect = 0.001
Identities = 20/49 (40%), Positives = 34/49 (68%), Gaps = 1/49 (2%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKS 49
I+ +R+KNFK+F K +I F +ITG N +GKSN+++++ + +G S
Sbjct: 3 IEKIRLKNFKSFGKKAEIPFFKGFTVITGPNGSGKSNIIDSILFCLGLS 51
>dbj|BAB31946.1| (AK019977) data source:SPTR, source key:O95347,
evidence:ISS~homolog to CHROMOSOME-ASSOCIATED
PROTEIN-E~putative [Mus musculus]
Length = 284
Score = 45.4 bits (106), Expect = 0.001
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
++S+ ++ FK++ + T+++GF L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 VKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNL 62
Query: 60 YDNIRKE---PLTSESKSLMFYGLDTKE 84
D + K +T S S+ F D K+
Sbjct: 63 QDLVYKNGQAGITKASVSITFDNSDKKQ 90
>dbj|BAB28654.1| (AK013109) data source:SPTR, source key:O95347,
evidence:ISS~homolog to CHROMOSOME-ASSOCIATED
PROTEIN-E~putative [Mus musculus]
Length = 270
Score = 45.4 bits (106), Expect = 0.001
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
++S+ ++ FK++ + T+++GF L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 VKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNL 62
Query: 60 YDNIRKE---PLTSESKSLMFYGLDTKE 84
D + K +T S S+ F D K+
Sbjct: 63 QDLVYKNGQAGITKASVSITFDNSDKKQ 90
>ref|NP_037556.1| (NC_001277) unknown [Pediococcus pentosaceus]
gb|AAD39633.1|AF033858_16 (AF033858) unknown [Pediococcus pentosaceus]
Length = 607
Score = 45.1 bits (105), Expect = 0.001
Identities = 34/122 (27%), Positives = 62/122 (49%), Gaps = 11/122 (9%)
Query: 4 SVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPC-TNVLEIYDN 62
SV I NF+ +KNTKI+ +L + G+N+ GKS +++AL ++ TN L IY
Sbjct: 5 SVTIHNFRGYKNTKINIDDQLTTLIGKNDVGKSTIVDALEIFFNNTVVKLDTNDLNIY-- 62
Query: 63 IRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPTAE 122
S+ S+ D E I +D+NQ +L+ +++ + N + ++ ++
Sbjct: 63 ----ATDSKLVSISCEFSDIPESI----IIDSNQQTNLKDEYLVNANGNLEIKKVYDCSK 114
Query: 123 QT 124
+T
Sbjct: 115 KT 116
>ref|NP_491486.1| (NM_059085) F28B3.7.p [Caenorhabditis elegans]
gb|AAK21378.2| (AF003136) Hypothetical protein F28B3.7 [Caenorhabditis elegans]
Length = 1281
Score = 45.1 bits (105), Expect = 0.001
Identities = 37/155 (23%), Positives = 76/155 (48%), Gaps = 21/155 (13%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
+ ++ I+NFK++K G FT+ I G N +GKSNL++A+ +++G+ P + + Y
Sbjct: 16 LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEK--PSSLRVRKY 73
Query: 61 DNI-----RKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIES 115
++ +P+ + + M Y + +++ T NN T ++ +++
Sbjct: 74 ADLIHGAPINKPVAKKCRVTMNYKY-SDGKVKAFTRGVNNGT-----------SEHLLDG 121
Query: 116 QIIPTAEQTQMSSQLNFTLKKNNEEIYNDHL-NIA 149
Q + +A +Q +N +K N +Y + NIA
Sbjct: 122 QTVTSAAYSQEMESINIFIKARNFLVYQGAIENIA 156
>sp|P50533|XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E
pir||B55094 chromosomal protein XCAP-E - African clawed frog
gb|AAA64680.1| (U13674) XCAP-E [Xenopus laevis]
Length = 1203
Score = 45.1 bits (105), Expect = 0.001
Identities = 29/88 (32%), Positives = 50/88 (55%), Gaps = 5/88 (5%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
++S+ I FK++ + T+I+GF L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 VKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRASNL 62
Query: 60 YDNIRKE---PLTSESKSLMFYGLDTKE 84
D + K +T + S+ F D K+
Sbjct: 63 QDLVYKNGQAGITKATVSITFDNYDKKQ 90
>pir||T34063 chromosome segregation protein smc1 F28B3.7 [similarity] -
Caenorhabditis elegans
Length = 1310
Score = 45.1 bits (105), Expect = 0.001
Identities = 37/155 (23%), Positives = 76/155 (48%), Gaps = 21/155 (13%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
+ ++ I+NFK++K G FT+ I G N +GKSNL++A+ +++G+ P + + Y
Sbjct: 45 LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEK--PSSLRVRKY 102
Query: 61 DNI-----RKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIES 115
++ +P+ + + M Y + +++ T NN T ++ +++
Sbjct: 103 ADLIHGAPINKPVAKKCRVTMNYKY-SDGKVKAFTRGVNNGT-----------SEHLLDG 150
Query: 116 QIIPTAEQTQMSSQLNFTLKKNNEEIYNDHL-NIA 149
Q + +A +Q +N +K N +Y + NIA
Sbjct: 151 QTVTSAAYSQEMESINIFIKARNFLVYQGAIENIA 185
>ref|NP_387885.1| (NC_000964) recF [Bacillus subtilis]
sp|P05651|RECF_BACSU DNA replication and repair protein recF
pir||D22930 DNA repair and genetic recombination protein recF - Bacillus
subtilis
dbj|BAA05240.1| (D26185) recombination protein [Bacillus subtilis]
emb|CAB11780.1| (Z99104) recF [Bacillus subtilis]
Length = 370
Score = 45.1 bits (105), Expect = 0.001
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
IQ++ + +++N+ + ++ K+N+I G+N GK+NL+EA+Y L H +N E+
Sbjct: 3 IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60
>ref|NP_617057.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05537.1| (AE010900) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 689
Score = 44.7 bits (104), Expect = 0.002
Identities = 19/62 (30%), Positives = 38/62 (60%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
I +R++NF+ F +T ++ + LN+ G+NN+GK+ +L+AL + S+ ++ + Y
Sbjct: 14 ISKIRMQNFRCFCDTSVEFYEGLNVFIGENNSGKTTVLKALQLIFDNSVSKKLSIDDFYK 73
Query: 62 NI 63
I
Sbjct: 74 GI 75
>ref|NP_069865.1| (NC_000917) purine NTPase, putative [Archaeoglobus fulgidus]
sp|O29230|RA50_ARCFU DNA double-strand break repair rad50 ATPase
pir||H69378 purine NTPase homolog - Archaeoglobus fulgidus
gb|AAB90211.1| (AE001032) purine NTPase, putative [Archaeoglobus fulgidus]
Length = 886
Score = 44.7 bits (104), Expect = 0.002
Identities = 18/42 (42%), Positives = 34/42 (80%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEAL 42
+++ ++IKNF++ ++KI+ T +N+I G+N AGKS++LEA+
Sbjct: 3 LLKELQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAI 44
>ref|NP_560920.1| (NC_003366) DNA repair and genetic recombination protein
[Clostridium perfringens]
sp|Q8XPF9|RECF_CLOPE DNA replication and repair protein recF
dbj|BAB79710.1| (AP003185) DNA repair and genetic recombination protein
[Clostridium perfringens]
Length = 361
Score = 44.7 bits (104), Expect = 0.002
Identities = 79/389 (20%), Positives = 148/389 (37%), Gaps = 65/389 (16%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYD 61
I+S+++ N++N++N I +N+ G N GK+N++EA+YY H TN
Sbjct: 3 IKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHR-TN------ 55
Query: 62 NIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPTA 121
R + L +K F LD ++ ++ +D N I + +K I I +
Sbjct: 56 --RDKELIEWNKDRAFIRLDVHKD-RLDKIIDVN---------ILKDGKKAISINSIKIS 103
Query: 122 EQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLPF 181
+ ++ N + + L I K G R+F + + +QL K
Sbjct: 104 KIGELIGTFNVVM------FSPEDLKIVK--------ESPGIRRRFIDMELSQLNKRYYH 149
Query: 182 ESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNNQLKLKV 241
++ + V + +++ I N ++ + + L Q+ NI QL
Sbjct: 150 N---LVQYNKVLHERNLVLKNKNI--NEEMLDIYDIQLAQYGENIIKTRLKYIEQLNKYS 204
Query: 242 KDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYIDEVEN-------------GLHFSR 288
K+I +++ G ++ +I + DN K I +E G H
Sbjct: 205 KEIHKEI---TSGKEEIEFKYISTVKDLDNIKDSMIKLLEQNRKKDIDKRATSIGPHRDD 261
Query: 289 MRLLLKNTIDFINNN-----------KDGNLQVFMTTHSQEFIEILDQVIREKDFAHQTK 337
+ L N I + K +L++ + + +LD V+ E DF +
Sbjct: 262 FNIYLNNIDAKIYGSQGQQRTSVLTIKFASLKIIKEITGEYPVLLLDDVLSELDFNRKRY 321
Query: 338 LFCLKQDDQYVIPRTYYGENLEYYFENEE 366
+ ++ Q VI T + Y EN +
Sbjct: 322 VLTSIKNIQTVITCTGIEDLTSYLDENSK 350
>sp|Q90988|SCII_CHICK CHROMOSOME SCAFFOLD PROTEIN SCII
pir||A54817 ATPase ScII, chromosomal scaffold - chicken
emb|CAA56767.1| (X80792) chicken SCII [Gallus gallus]
Length = 1189
Score = 44.3 bits (103), Expect = 0.002
Identities = 29/114 (25%), Positives = 56/114 (48%), Gaps = 2/114 (1%)
Query: 2 IQSVRIKNFKNF-KNTKIDGFTKL-NIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEI 59
I+S+ ++ FK++ + T+I F L N ITG N +GKSN+L+++ +L+G S +
Sbjct: 3 IKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASSL 62
Query: 60 YDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVI 113
D + K +K+ + D ++ +NN + + + I K +
Sbjct: 63 QDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYL 116
>pir||A64505 P115 homolog - Methanococcus jannaschii
Length = 1169
Score = 43.9 bits (102), Expect = 0.003
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKS 49
++ + +KNFK+FK +D I G N +GKSN+++A+ +++GK+
Sbjct: 4 LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKT 51
>ref|NP_248653.1| (NC_000909) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
gb|AAB99663.1| (U67604) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 1169
Score = 43.9 bits (102), Expect = 0.003
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKS 49
++ + +KNFK+FK +D I G N +GKSN+++A+ +++GK+
Sbjct: 4 LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKT 51
>ref|NP_596049.1| (NC_003423) Xenopus 14s cohesin smc1 subunit homolog
[Schizosaccharomyces pombe]
pir||T40059 chromosome segregation protein smc1 SPBC29A10.04 [similarity] -
fission yeast (Schizosaccharomyces pombe)
emb|CAA22432.1| (AL034463) Xenopus 14s cohesin smc1 subunit homolog
[Schizosaccharomyces pombe]
Length = 1233
Score = 43.9 bits (102), Expect = 0.003
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 5 VRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVG-KSMH-PCTNVLEIYD 61
+ ++NFK+++ +I G F I G N AGKSNL++A+ +++G KS H TNV E+
Sbjct: 7 LEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELI- 65
Query: 62 NIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIAS-ENQKVIESQIIPT 120
R + L ++ T ++++ LDN + + + S + I+ +I+
Sbjct: 66 -YRGKILQRDNTDFTDSSNPTTAYVKLMYELDNGEQREYKRAITPSGATEYKIDEEIVTF 124
Query: 121 AEQTQMSSQLNFTLKKNN 138
+E + N ++ N
Sbjct: 125 SEYCGSLQKENILVRARN 142
>ref|NP_142852.1| (NC_000961) purine NTPase [Pyrococcus horikoshii]
sp|O58687|RA50_PYRHO DNA double-strand break repair rad50 ATPase
pir||C71083 probable purine NTPase - Pyrococcus horikoshii
dbj|BAA30025.1| (AP000004) 879aa long hypothetical purine NTPase [Pyrococcus
horikoshii]
Length = 879
Score = 43.5 bits (101), Expect = 0.004
Identities = 22/46 (47%), Positives = 35/46 (75%), Gaps = 2/46 (4%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVG 47
I+ V ++NF++ KN++I+ +N+I GQN AGKS+LL+A+ LVG
Sbjct: 3 IERVIVQNFRSHKNSEIEFKPGINLIIGQNGAGKSSLLDAI--LVG 46
>dbj|BAB31016.1| (AK017948) SMC (structural maintenance of chromosomes 1)-like 1
(S. cerevisiae)~data source:MGD, source
key:MGI:1344345, evidence:ISS~putative [Mus musculus]
Length = 301
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|XP_050403.1| (XM_050403) similar to SMC1 (structural maintenance of
chromosomes 1, yeast)-like 1; Segregation of mitotic
chromosomes 1 (SMC1, yeast human homolog of [Homo
sapiens]
dbj|BAA11495.2| (D80000) similar to mitosis-specific chromosome segregation
protein SMC1 of S.cerevisiae. [Homo sapiens]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|NP_006297.1| (NM_006306) SMC1 (structural maintenance of chromosomes 1,
yeast)-like 1; Segregation of mitotic chromosomes 1
(SMC1, yeast human homolog of [Homo sapiens]
pir||I54383 chromosome segregation protein smc1 [similarity] - human
gb|AAB34405.1| (S78271) mitosis-specific chromosome segregation protein SMC1
homolog [Homo sapiens]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|NP_622332.1| (NC_003869) predicted ATP-dependent endonuclease of the OLD family
[Thermoanaerobacter tengcongensis]
gb|AAM23936.1| (AE013035) predicted ATP-dependent endonuclease of the OLD family
[Thermoanaerobacter tengcongensis]
Length = 575
Score = 42.7 bits (99), Expect = 0.007
Identities = 73/356 (20%), Positives = 145/356 (40%), Gaps = 56/356 (15%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEAL--YYLVGKSMHPCTNVLEI 59
I+S+ I NF++ K+ ++D + +++ G NN+GK+N+L AL +Y G + T+ +
Sbjct: 3 IKSMEIHNFRSIKDLRVDLYD-YDVLIGANNSGKTNILTALRIFYEDGIKFNEATDFPKF 61
Query: 60 YDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIP 119
+ + ES + Y L +E + N + K++ S + K +
Sbjct: 62 HTD------DEESWIEIEYVLTDEEFKNLKDEYKNPGNILKVRKYLKSADNKKV------ 109
Query: 120 TAEQTQMSSQLNFTLKKNNEEIYNDHLNI--AKVPNFPPIPNQSGYNRQFKNFDSNQLQK 177
+T S+ + K +E ++ NI AK+ + IP + K + L+
Sbjct: 110 ---KTNQSNIYAYENGKLSENLFYGAKNISQAKLGSVIYIPAVTKTEETLKLTGPSPLRN 166
Query: 178 LLPFESAVIIPSDVVYRQAHMI----------QAVSKICSNNQLEEELNKHLNQF--DNN 225
+L F +I + + +A S +E+NK+L + + N
Sbjct: 167 MLSFVVKKVIETSNSFEDLKKAFEDFNKKFKEEASKDGVSLENFRKEINKNLEGWGVEFN 226
Query: 226 IQAISFNTNNQLKLKV------KDIKEKVPLSVFGDGLKKYLHIVSAFMADNAK------ 273
+ + +K V K +++++ +S++G GL+++L V ++ K
Sbjct: 227 LVINPVGAEDIIKNLVTHNLIDKILEQEMDVSLYGQGLQRHLIYVLISLSAQYKEKSVSE 286
Query: 274 ---------TIYIDEVENGLHFSRMRLLLKNTIDFINNNKDGNLQVFMTTHSQEFI 320
I +E E LH S+ L + + QV ++THS F+
Sbjct: 287 KKDFSPDLTLILFEEPEAFLHPSQQEFL---NFSLESLASEETQQVIISTHSPVFV 339
>ref|NP_113871.1| (NM_031683) segregation of mitotic chromosomes b; SMC
(segregation of mitotic chromosomes 1)-like 1 (yeast)
[Rattus norvegicus]
emb|CAA06377.1| (AJ005113) SMC-protein [Rattus norvegicus]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|NP_062684.1| (NM_019710) SMC (segregation of mitotic chromosomes 1)-like 1
(yeast); chromosome segregation protein SmcB;
segregation of mitotic chromosomes b [Mus musculus]
gb|AAD27753.1|AF047600_1 (AF047600) chromosome segregation protein SmcB [Mus musculus]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|XP_125458.1| (XM_125458) SMC (structural maintenance of chromosomes 1)-like 1
[Mus musculus]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>dbj|BAB28937.1| (AK013648) SMC (structural maintenance of chromosomes 1)-like 1
(S. cerevisiae)~data source:MGD, source
key:MGI:1344345, evidence:ISS~putative [Mus musculus]
Length = 199
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|NP_562731.1| (NC_003366) DNA repair and genetic recombination protein
[Clostridium perfringens]
dbj|BAB81521.1| (AP003191) DNA repair and genetic recombination protein
[Clostridium perfringens]
Length = 565
Score = 42.7 bits (99), Expect = 0.007
Identities = 63/288 (21%), Positives = 113/288 (38%), Gaps = 37/288 (12%)
Query: 1 MIQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
M+ + I NF + +D I++G+ AGKS L++A+ Y+ G +
Sbjct: 1 MLLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSKFNK-------- 52
Query: 61 DNIRKEPLTSESKSLM--FYGLDTKEEIQ-----IVTTLDNNQTLDLQIKFIASENQKVI 113
D IR T E K+ + + +D E ++ + D+ + + N KV
Sbjct: 53 DLIR----TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFINGRSNIKVN 108
Query: 114 ESQIIPTAEQTQMSSQLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSN 173
II + S+ L+ + NN+ + N +I + +F S + K +
Sbjct: 109 GRSIIVATLKKISSTLLDIHGQHNNQNLLNKEKHIMYLDDF----GDSKLSEDLKEY-GE 163
Query: 174 QLQKLLPFESAVIIPSD------VVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDN--- 224
+ +L E + S+ ++ + + + + N EEEL + N N
Sbjct: 164 KFSELKDIERKISELSNEGKDEKLLNYLEYQLNEIEEAKLRNGEEEELTERFNVLSNAEK 223
Query: 225 --NIQAISFNTNNQLKLKVKDIKEKV--PLSVFGDGLKKYLHIVSAFM 268
N IS+N N ++ V D V LS + L+K +I S M
Sbjct: 224 IKNSLGISYNLLNGIESSVVDSLSVVNRELSNVEEHLEKIKNINSKIM 271
>gb|AAD13141.1| (AF072712) SMC1 protein [Bos taurus]
Length = 1233
Score = 42.7 bits (99), Expect = 0.007
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 IQSVRIKNFKNFKNTKIDG-FTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + I+NFK++K +I G F + I G N +GKSNL++A+ +++G+ V +
Sbjct: 4 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSN-LRVKTLR 62
Query: 61 DNIRKEPLTSESKSLMFYGLDTKEE 85
D I P+ + + F + EE
Sbjct: 63 DLIHGAPVGKPAANRAFVSMVYSEE 87
>ref|NP_485171.1| (NC_003272) chromosome segregation protein [Nostoc sp. PCC 7120]
dbj|BAB73085.1| (AP003584) chromosome segregation protein [Nostoc sp. PCC 7120]
Length = 1208
Score = 42.4 bits (98), Expect = 0.009
Identities = 31/123 (25%), Positives = 58/123 (46%), Gaps = 16/123 (13%)
Query: 2 IQSVRIKNFKNFKNTK----IDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVL 57
I+ V + NFK+F T + GFT +++G N +GKSN+L+AL + +G +
Sbjct: 4 IKRVELTNFKSFGGTTSVPLLSGFT---VVSGPNGSGKSNILDALLFCLGLASSKGMRAD 60
Query: 58 EIYDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQI 117
+ D + T++S+S + E + T D + +D +F++ + +
Sbjct: 61 RLPDLVNNTQ-TAKSRSAV--------EAVVTVTFDLSDLVDASDQFLSVSDDAELSQNE 111
Query: 118 IPT 120
PT
Sbjct: 112 APT 114
>ref|NP_343125.1| (NC_002754) Hypothetical protein [Sulfolobus solfataricus]
ref|NP_343193.1| (NC_002754) Hypothetical protein [Sulfolobus solfataricus]
gb|AAK41915.1| (AE006783) Hypothetical protein [Sulfolobus solfataricus]
gb|AAK41983.1| (AE006789) Hypothetical protein [Sulfolobus solfataricus]
Length = 464
Score = 42.4 bits (98), Expect = 0.009
Identities = 43/154 (27%), Positives = 69/154 (43%), Gaps = 30/154 (19%)
Query: 219 LNQFDNNIQAISFNTNNQLKLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTIYID 278
LN FD NI + ++ N+L++ D + V ++ G G K L+ + ++ + I ID
Sbjct: 323 LNSFDPNIFYVYLSSGNELRVLFND-RTDVSINELGYGYKSLLNFILLYVIYQPRIILID 381
Query: 279 EVEN-GLHFSRMR----LLLKNTIDFINNNKDGNLQVFMTTHSQEFIEILDQVIREKDFA 333
++E LH ++ LLLK +D I +TT S + L + +K
Sbjct: 382 DLEGFALHPDLLKMFYDLLLKIDVDLI----------LITTQSSDIYAYLAEKRSDK--- 428
Query: 334 HQTKLFCLKQDDQY-------VIPRTYYGENLEY 360
F L DD+Y V+ R YY E+L Y
Sbjct: 429 ---VRFILINDDKYEVLTSEEVLDRLYY-EDLRY 458
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,682,270
Number of Sequences: 1026957
Number of extensions: 9608472
Number of successful extensions: 31543
Number of sequences better than 1.0e-02: 61
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 31484
Number of HSP's gapped (non-prelim): 71
length of query: 370
length of database: 324,149,939
effective HSP length: 122
effective length of query: 248
effective length of database: 198,861,185
effective search space: 49317573880
effective search space used: 49317573880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)