BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645695|ref|NP_207872.1| hypothetical protein
[Helicobacter pylori 26695]
(207 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207872.1| (NC_000915) hypothetical protein [Helicoba... 417 e-116
ref|NP_223063.1| (NC_000921) putative [Helicobacter pylori ... 380 e-105
>ref|NP_207872.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64655 hypothetical protein HP1081 - Helicobacter pylori (strain 26695)
gb|AAD08133.1| (AE000615) H. pylori predicted coding region HP1081 [Helicobacter
pylori 26695]
Length = 207
Score = 417 bits (1072), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQ 60
MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQ
Sbjct: 1 MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQ 60
Query: 61 KEFKKAITQQIAYFLKDKSAFILNVSGNVFFSFEENPKDLKAIKERLKKTIEPNADPKAV 120
KEFKKAITQQIAYFLKDKSAFILNVSGNVFFSFEENPKDLKAIKERLKKTIEPNADPKAV
Sbjct: 61 KEFKKAITQQIAYFLKDKSAFILNVSGNVFFSFEENPKDLKAIKERLKKTIEPNADPKAV 120
Query: 121 MRFLNLQASLILECVPQTTCPFDTLLIPTAFSVPVYYANRLGDNPSLFSQEDKTYHNALI 180
MRFLNLQASLILECVPQTTCPFDTLLIPTAFSVPVYYANRLGDNPSLFSQEDKTYHNALI
Sbjct: 121 MRFLNLQASLILECVPQTTCPFDTLLIPTAFSVPVYYANRLGDNPSLFSQEDKTYHNALI 180
Query: 181 KALNKAYYSLMEGLEKRLNAIKNAEWL 207
KALNKAYYSLMEGLEKRLNAIKNAEWL
Sbjct: 181 KALNKAYYSLMEGLEKRLNAIKNAEWL 207
>ref|NP_223063.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71943 hypothetical protein jhp0344 - Helicobacter pylori (strain J99)
gb|AAD05923.1| (AE001470) putative [Helicobacter pylori J99]
Length = 207
Score = 380 bits (977), Expect = e-105
Identities = 187/207 (90%), Positives = 193/207 (92%)
Query: 1 MLRVLSVGVAFILLGCQFFNKTTLHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQ 60
MLRVLSVGV FILLGCQFFNKTTLHLKYKDYPKNS LKTA TLTPPKIFFNA FVPPFYQ
Sbjct: 1 MLRVLSVGVVFILLGCQFFNKTTLHLKYKDYPKNSPLKTASTLTPPKIFFNAHFVPPFYQ 60
Query: 61 KEFKKAITQQIAYFLKDKSAFILNVSGNVFFSFEENPKDLKAIKERLKKTIEPNADPKAV 120
KEFKKA+ QQIAYFLKDKSA N+SGNVFFSFEE+PKDLKAIKERLKKTIEPN DPKAV
Sbjct: 61 KEFKKALAQQIAYFLKDKSALTFNISGNVFFSFEESPKDLKAIKERLKKTIEPNTDPKAV 120
Query: 121 MRFLNLQASLILECVPQTTCPFDTLLIPTAFSVPVYYANRLGDNPSLFSQEDKTYHNALI 180
MRFLNLQASLILECVPQT CPFDTLLIPTA SVP+ YANRLGDNPSLF QEDK+YHNALI
Sbjct: 121 MRFLNLQASLILECVPQTACPFDTLLIPTALSVPIDYANRLGDNPSLFPQEDKSYHNALI 180
Query: 181 KALNKAYYSLMEGLEKRLNAIKNAEWL 207
KALNKAYYSLMEGLEKRLNAI+NA WL
Sbjct: 181 KALNKAYYSLMEGLEKRLNAIENAAWL 207
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,684,208
Number of Sequences: 1026957
Number of extensions: 4846680
Number of successful extensions: 12340
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12338
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 324,149,939
effective HSP length: 116
effective length of query: 91
effective length of database: 205,022,927
effective search space: 18657086357
effective search space used: 18657086357
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 94 (40.8 bits)