BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645697|ref|NP_207874.1| hypothetical protein
[Helicobacter pylori 26695]
(479 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 993 0.0
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 961 0.0
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 385 e-106
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 384 e-105
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 340 2e-92
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 335 5e-91
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 334 1e-90
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 327 2e-88
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 253 3e-66
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 253 3e-66
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 213 3e-54
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 213 4e-54
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 197 2e-49
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 194 3e-48
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 171 1e-41
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 170 3e-41
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 993 bits (2567), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MKNSTPLKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETF 60
MKNSTPLKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETF
Sbjct: 1 MKNSTPLKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETF 60
Query: 61 VTAVGQGNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGY 120
VTAVGQGNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGY
Sbjct: 61 VTAVGQGNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGY 120
Query: 121 LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAK 180
LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAK
Sbjct: 121 LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAK 180
Query: 181 GGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
GGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV
Sbjct: 181 GGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
Query: 241 KNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETK 300
KNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETK
Sbjct: 241 KNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETK 300
Query: 301 AYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
AYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT
Sbjct: 301 AYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
Query: 361 GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEAS 420
GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEAS
Sbjct: 361 GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEAS 420
Query: 421 AAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYSDRSHLMTTLSAKF 479
AAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYSDRSHLMTTLSAKF
Sbjct: 421 AAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYSDRSHLMTTLSAKF 479
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 961 bits (2483), Expect = 0.0
Identities = 458/479 (95%), Positives = 469/479 (97%)
Query: 1 MKNSTPLKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETF 60
MKNS PLKN+VFCGLYVLSLSAS+QAFDYKIEV AESFSKVGFNKKKIDIARGIYPTETF
Sbjct: 1 MKNSAPLKNKVFCGLYVLSLSASVQAFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETF 60
Query: 61 VTAVGQGNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGY 120
VTAVGQGNIYADFL K LKDQGHVLEGK+GGT+GG+AYDSTKFNQGGSVIYNYIGYWDGY
Sbjct: 61 VTAVGQGNIYADFLSKSLKDQGHVLEGKVGGTIGGIAYDSTKFNQGGSVIYNYIGYWDGY 120
Query: 121 LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAK 180
LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIF AK
Sbjct: 121 LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFAAK 180
Query: 181 GGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
GGRYQSNAPYMS YTQGFEISAK+KDKNEG HKLWWFSSWGRAFAYGEWIYDFYSPRTV+
Sbjct: 181 GGRYQSNAPYMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVI 240
Query: 241 KNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETK 300
KNGRTLNYGIHLV+YTYERKGVSVSPFFQFSPGTYYSPGV VGYDSNPNFNGVGFRSETK
Sbjct: 241 KNGRTLNYGIHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSETK 300
Query: 301 AYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
AYILLPVH PL+RDTYRYA+KAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT
Sbjct: 301 AYILLPVHAPLKRDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
Query: 361 GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEAS 420
GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSG LANEAS
Sbjct: 361 GNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGALANEAS 420
Query: 421 AAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYSDRSHLMTTLSAKF 479
AAVNVGYKISKSLTASVKLEYLGVMTH+GFTVGSYRPTPGSKALYSDRSHLMTTLSAKF
Sbjct: 421 AAVNVGYKISKSLTASVKLEYLGVMTHSGFTVGSYRPTPGSKALYSDRSHLMTTLSAKF 479
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 385 bits (990), Expect = e-106
Identities = 211/484 (43%), Positives = 290/484 (59%), Gaps = 34/484 (7%)
Query: 20 LSASLQAFDY----KIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNI-YADFL 74
LS+ QAFD KI+ AESFSKVGFN K I+ +G+YPTETF+T + + + + L
Sbjct: 18 LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELL 77
Query: 75 PKGLKDQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRAL 127
PK GH L+G +GG G V YDSTK N+ G++ +NY+GYW G +G K
Sbjct: 78 PKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQKPWA 137
Query: 128 LDGTSIHECALG-------------SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYK 174
G + G S+ + +++ C A R NY++ NA+L Y YK
Sbjct: 138 SCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTR-NYVIYNAYLRYNYK 196
Query: 175 DIFLAKGGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFY 234
DIF +GGRY+S A YMSGY QG +++ N G K WWFSS+GR FAY EW+Y+FY
Sbjct: 197 DIFEIRGGRYESPADYMSGYNQGLDMTL-----NLGNFKFWWFSSFGRGFAYNEWLYNFY 251
Query: 235 SPRT-VVKNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGV 293
SP+T +KNG+T+N G+H + KG S+ PF FSP Y P + YDSNP F G+
Sbjct: 252 SPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGL 311
Query: 294 GFRSETKAYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNA 353
GFRS+T +L P + DTY++ + AG SL+I+Q+F++NE+NFG YK + NA
Sbjct: 312 GFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNA 371
Query: 354 NAYIGTTGNPLGIDFWTNSVY-DIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTS 412
N IG GN LG DFWTN+VY + +LS+++ A+A + + FGGGVH+K LWG L R T
Sbjct: 372 NWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTY 431
Query: 413 GTLANEASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSK-ALYSDRSHL 471
G ANE ++N GYK +K+ +A +K EY V+ H G+ +G P S+ A DRSH+
Sbjct: 432 GPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATDQDRSHI 491
Query: 472 MTTL 475
T +
Sbjct: 492 FTEI 495
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 384 bits (985), Expect = e-105
Identities = 209/479 (43%), Positives = 288/479 (59%), Gaps = 34/479 (7%)
Query: 25 QAFDY----KIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNI-YADFLPKGLK 79
+AFD KI+ AESFSKVGFN K I+ +GIYPTETF+T + + + + LPK
Sbjct: 23 EAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDFTELLPKSAT 82
Query: 80 DQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLDGTS 132
GH L+G +GG G V YDSTK N+ G++ +NY+GYW G +G K G +
Sbjct: 83 ANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQKPWASCGLA 142
Query: 133 IHECALG-------------SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLA 179
G S+ + + + C A+ R NY++ NA+L Y YKDIF
Sbjct: 143 TGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADHTR-NYVIYNAYLRYNYKDIFEI 201
Query: 180 KGGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRT- 238
+GGRY+S A YMSGY QG +++ N G K WWFSS+GR FAY EW+Y+FYSP+T
Sbjct: 202 RGGRYESPADYMSGYNQGLDMTL-----NLGNFKFWWFSSFGRGFAYNEWLYNFYSPKTY 256
Query: 239 VVKNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSE 298
+KNG+T+N G+H + KG S+ PF FSP Y P + YDSNP F G+GFRS+
Sbjct: 257 TLKNGQTINPGVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQ 316
Query: 299 TKAYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIG 358
T +L P + DTY++ + AG SL+I+Q+F++NE+NFG YK + NAN IG
Sbjct: 317 TDVTVLNPFYAKRFWDTYQFGMLAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIG 376
Query: 359 TTGNPLGIDFWTNSVY-DIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLAN 417
GN LG DFWTN+VY + +LS+++ A+A + + FGGGVH+K LWG L R T G AN
Sbjct: 377 YHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRAN 436
Query: 418 EASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSK-ALYSDRSHLMTTL 475
E ++N+GYK +K+ +A +K EY V+ H G+ +G P S+ A DRSH+ T +
Sbjct: 437 EQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATDQDRSHIFTEI 495
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 340 bits (873), Expect = 2e-92
Identities = 200/484 (41%), Positives = 270/484 (55%), Gaps = 50/484 (10%)
Query: 20 LSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
LS SLQ F+ K+ + S +GFN+ KI+ RGIYP + F T G + LPK +
Sbjct: 14 LSTSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVS 73
Query: 80 DQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALG 139
D HVL+GKIGG +G + YD TK + GSV YN GY+DG++G +L
Sbjct: 74 D--HVLKGKIGGMVGSIFYDGTKKFEDGSVAYNLFGYYDGFMGVYTNILQ---------- 121
Query: 140 SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAPYMSGYTQGFE 199
DS+ N + NK RNY+ ++A+LEY YK+ F K GRY S PY SG TQGF+
Sbjct: 122 -----TDSLETQNMKHNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQ 176
Query: 200 ISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLN------------ 247
+S + K +L WFSSWGRAFAYG ++ D+++ RT G T N
Sbjct: 177 VSGQYKHA-----RLTWFSSWGRAFAYGSFLMDWFAARTTYSGGFTKNNNGGYDSHGRKV 231
Query: 248 -YGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLP 306
YG H V TY+ + F+ SP + +PGV +G+DSNPNF+G GFRS+T P
Sbjct: 232 LYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFP 291
Query: 307 VHDPLR------RDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
++ P YRY A GQ+L+IRQRFD N +N AFYKV++NAN +IG
Sbjct: 292 IYYPWMIVKSNGSPVYRYDTPATQNGQNLIIRQRFDINNYNVSIAFYKVFQNANGWIGNM 351
Query: 361 GNPLGIDFWTNSVYD--IGQALSHVVTADAVSGWVFGGGVH--KKWLWGTLWRWTSGTLA 416
GNP G+ +NSVY G AL DA + ++ GG H KK+ W ++++ ++
Sbjct: 352 GNPSGVIMGSNSVYAGFTGTALKR----DAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
Query: 417 NEASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGS-KALYSDRSHLMTTL 475
EA A +++GYK ++ L+ SV L Y GV T+ GF G P P + ALYSDRS L T L
Sbjct: 408 WEARAMISLGYKFTEYLSGSVDLAYYGVHTNKGFKPGENGPVPKNFPALYSDRSALYTAL 467
Query: 476 SAKF 479
A F
Sbjct: 468 VASF 471
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 335 bits (860), Expect = 5e-91
Identities = 198/484 (40%), Positives = 269/484 (54%), Gaps = 50/484 (10%)
Query: 20 LSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
LS+SLQ F+ K+ + S +GFN+ KI+ RGIYP + F T G + LPK +
Sbjct: 14 LSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVS 73
Query: 80 DQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALG 139
D HVL+GKIGG +G + YD TK + SV YN GY+DG++GG +L
Sbjct: 74 D--HVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQS--------- 122
Query: 140 SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAPYMSGYTQGFE 199
D +A N + NK RNY+ ++A+LEY YK+ F K GRY S PY SG TQGF+
Sbjct: 123 ------DDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQ 176
Query: 200 ISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLN------------ 247
IS + K +L WFSS+GRAFAYG ++ D+++ RT G T N
Sbjct: 177 ISGQYKKA-----RLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKV 231
Query: 248 -YGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLP 306
YG H V TY+ + F+ SP + +PGV +G+DSNPNF+G GFRS+T P
Sbjct: 232 LYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFP 291
Query: 307 VHDPLR------RDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
++ P Y+Y A GQ+L+I QRFD N +N AFYKV++NAN +IG
Sbjct: 292 IYYPWMIVKSNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNM 351
Query: 361 GNPLGIDFWTNSVYD--IGQALSHVVTADAVSGWVFGGGVH--KKWLWGTLWRWTSGTLA 416
GNP G+ +NSVY G AL DA + ++ GG H KK+ W ++++ ++
Sbjct: 352 GNPSGVIMGSNSVYAGFTGTALKR----DAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
Query: 417 NEASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGS-KALYSDRSHLMTTL 475
EA A +++GYK ++ L+ SV L Y GV T+ GF G P P ALYSDRS L T L
Sbjct: 408 WEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTAL 467
Query: 476 SAKF 479
A F
Sbjct: 468 VASF 471
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 334 bits (857), Expect = 1e-90
Identities = 201/473 (42%), Positives = 273/473 (57%), Gaps = 43/473 (9%)
Query: 17 VLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPK 76
+L + L AFDYK AESFSKVGFN K++ GI+PT TFVTA + + ++ LPK
Sbjct: 14 ILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPK 73
Query: 77 GLKDQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLD 129
++ H L+ +GG LG +AYDSTK +Q GS ++ +IG W GYLG
Sbjct: 74 NIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD------ 125
Query: 130 GTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAP 189
A D ++ ++ RNY++ N++L Y Y D F K GRY SN
Sbjct: 126 -------APWKDSRI---------ESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
Query: 190 YMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLNYG 249
+MSGYTQGFE+ K+ K L WFSS+GRA A G+WI D+Y+P + ++YG
Sbjct: 170 FMSGYTQGFELDYKINSKIA----LKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYG 225
Query: 250 IHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLPVHD 309
IH V + K V +PFF FSP TY +PG+ + DSNP F G+G RS+T ++ PV+
Sbjct: 226 IHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYA 285
Query: 310 PLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFW 369
D K G G SLLI QRFD NEFNFG +Y+ + NANA IG GNP+ D
Sbjct: 286 KDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIR 345
Query: 370 TNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKI 429
+NS+Y G S+ VTAD+VSG+VFGGGV++ +LWG L R+T T A+E S +++GY+
Sbjct: 346 SNSIY--GLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRW 403
Query: 430 SKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYS---DRSHLMTTLSAKF 479
+ V L+Y V H G+ V +P +KA + DRS+LM +S KF
Sbjct: 404 GSFASVDVNLQYYEVSMHTGYKVNDL-TSPFNKAFKANTQDRSNLM--VSVKF 453
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 327 bits (837), Expect = 2e-88
Identities = 203/474 (42%), Positives = 270/474 (56%), Gaps = 43/474 (9%)
Query: 17 VLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPK 76
+L + L AFDYK AES SKVGFN K++ GI+PT TFVTA + + ++ LPK
Sbjct: 14 ILYNQSPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPK 73
Query: 77 GLKDQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLD 129
++ H L+ +GG LG +AYDSTK +Q GS ++ IG W G+LG
Sbjct: 74 NIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQIYGSELFYLIGRWWGFLG------- 124
Query: 130 GTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAP 189
+ DS+ +A RNY++ N++L Y Y D F K GRY SN
Sbjct: 125 -----------NAPWKDSLIESDAHT----RNYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
Query: 190 YMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLNY- 248
+MS YTQGFE+ K+ K L WFSS+GRA A+G+WI D+Y+P V ++GR Y
Sbjct: 170 FMSSYTQGFELDYKINSKIA----LKWFSSFGRALAFGQWIRDWYAP-IVTEDGRKEVYD 224
Query: 249 GIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLPVH 308
GIH + K V V PF FSP Y +PGV + DSNP F G+G R++T ++ PV+
Sbjct: 225 GIHAAQLYFSSKHVQVMPFAYFSPKIYGAPGVKIHIDSNPKFKGLGLRAQTTINVIFPVY 284
Query: 309 DPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDF 368
D Y K G G SLLI QRFDYNEFNFG +Y+ + NANA IG GNP+ ++
Sbjct: 285 AKDLYDVYWRNSKIGEWGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWYGNPIPFNY 344
Query: 369 WTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYK 428
NSVY G S+ +TADAVSG+VFGGGV++ +LWG L R+T T A+E S +N+GYK
Sbjct: 345 RNNSVY--GGVFSNAITADAVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLNLGYK 402
Query: 429 ISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYS---DRSHLMTTLSAKF 479
V LEY V H G+ + Y P +KA + DRS+LM ++ F
Sbjct: 403 WGSFARVDVNLEYYVVSMHNGYRL-DYLTGPFNKAFKADAQDRSNLMVSMKFFF 455
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 253 bits (647), Expect = 3e-66
Identities = 163/520 (31%), Positives = 254/520 (48%), Gaps = 83/520 (15%)
Query: 20 LSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
L ++AFDY+ E+FSK+GFN +I+ +GIYPTE+F+ V + + LPKG +
Sbjct: 18 LLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTE 77
Query: 80 DQGHVLEGKIGGTLGGVAYDSTKF--NQG-----GSVIYNYIGYWDGYLGGKRALLDGTS 132
+ H L +GG + + YD TK+ NQ GS++ N+IG + GY K
Sbjct: 78 N--HRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKY------- 128
Query: 133 IHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAPYMS 192
LG + A + A+ R Y+++ AFL Y YKD+F K GRY++N +MS
Sbjct: 129 -----LGP------AYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMS 177
Query: 193 GYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRT------- 245
G QG+E+ + + WW+SS+GR A+ WIY+F++ +K G
Sbjct: 178 GSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDF 237
Query: 246 LNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILL 305
+NYG H + TY KG+ F+ F+P TY +PG + YD+N NF VGFRS++
Sbjct: 238 INYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTF 297
Query: 306 PVH--DPLRRDTYRYAIKAGTAGQSLL--------IRQRFDYNEFNFGGAFYKVWKNANA 355
P++ +T Y+++ T SLL IRQ F ++ FN+ FY + N++A
Sbjct: 298 PLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDA 357
Query: 356 YIGTTGNP---------------------LGIDFWTNSVYDIGQALSHVVT-ADAVSGWV 393
++G+ P +G DFW N+ YD L+ +T A+ + +
Sbjct: 358 FLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYD---GLADAITNANTFTFYT 414
Query: 394 FGGGVHKKWLWGTLWRWTSGT--------LANEASAAVNVGYKISKSLTASVKLEYLGVM 445
GG+HK++ W R + ANE S N Y ++S+ + ++ Y G
Sbjct: 415 SVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGAR 474
Query: 446 THAGFTVGSY------RPTPGSKALYSDRSHLMTTLSAKF 479
+ G+ G + P A Y DRS++MT L+ KF
Sbjct: 475 INKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF 514
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 253 bits (647), Expect = 3e-66
Identities = 167/532 (31%), Positives = 258/532 (48%), Gaps = 91/532 (17%)
Query: 16 YVLSLSASL--------QAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQG 67
Y L+ S SL +AFDY+ E+FSK+GFN +I+ +GIYPTE+F+ V
Sbjct: 6 YFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLA 65
Query: 68 NIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKF--NQG-----GSVIYNYIGYWDGY 120
+ + LPKG ++ H L +GG + + YD TK+ NQ GS++ N+IG + GY
Sbjct: 66 QVKVNLLPKGTEN--HRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGY 123
Query: 121 LGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAK 180
K LG + A + A+ R Y+++ AFL Y YKD+F K
Sbjct: 124 FFNKY------------LGP------AYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFK 165
Query: 181 GGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
GRY++N +MSG QG+E+ + + WW+SS+GR A+ WIY+F++ +
Sbjct: 166 AGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYL 225
Query: 241 KNGRT-------LNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGV 293
K G +NYG H + TY KG+ F+ F+P TY +PG + YD+N NF V
Sbjct: 226 KKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFQNV 285
Query: 294 GFRSETKAYILLPVH--DPLRRDTYRYAIKAGTAGQSLL--------IRQRFDYNEFNFG 343
GFRS++ P++ +T Y+++ T SLL IRQ F ++ FN+
Sbjct: 286 GFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWS 345
Query: 344 GAFYKVWKNANAYIGTTGNP---------------------LGIDFWTNSVYDIGQALSH 382
FY + N++A++G+ P +G DFW N+ YD L+
Sbjct: 346 IGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYD---GLAD 402
Query: 383 VVT-ADAVSGWVFGGGVHKKWLWGTLWRWTSGT--------LANEASAAVNVGYKISKSL 433
+T A+ + + GG+HK++ W R + ANE S N Y ++S+
Sbjct: 403 AITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESI 462
Query: 434 TASVKLEYLGVMTHAGFTVGSY------RPTPGSKALYSDRSHLMTTLSAKF 479
+ ++ Y G + G+ G + P A Y DRS++MT L+ KF
Sbjct: 463 LLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF 514
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 213 bits (543), Expect = 3e-54
Identities = 145/467 (31%), Positives = 235/467 (50%), Gaps = 45/467 (9%)
Query: 24 LQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLKDQGH 83
L AF+Y++ SFS++ FN+ I+ +GIYPT ++VT G + + LPKG+++ H
Sbjct: 6 LSAFEYQVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGIEN--H 63
Query: 84 VLEGKIGGTLGGVAYDSTKF------NQGGSVIYN--YIGYWDGYLGGKRALLDGTSIHE 135
L +GG +G +AYDSTKF + G N Y+G W+GYL H
Sbjct: 64 KLGFGVGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGYL----------MQHS 113
Query: 136 CALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAPYMSGYT 195
+ K ++ R Y++ N +L+Y+YKDIF K GRY S A ++SG+
Sbjct: 114 QNWTREQKAQNA------------RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFN 161
Query: 196 QGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLNYGIHLVNY 255
QGFEI + K K+ WFS++GRA A ++I DFY+P V + +NYG+H N
Sbjct: 162 QGFEIFYRWKK-----FKIVWFSTFGRALANEQYIRDFYAP---VNYKQKINYGMHNFNL 213
Query: 256 TYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLPVH-DPLRRD 314
YE K + ++PF F P + +PG + +D+ + + +R +T Y P++ D L +D
Sbjct: 214 VYENKYIRIAPFIWFYPKNFNAPGFEITHDTKSYWKSL-WRIQTTFYAWFPLYSDYLSKD 272
Query: 315 TYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFWTNSVY 374
YR A+ G +L + QR ++ + FG + YK + NA+ +G G+P+ + T
Sbjct: 273 YYRAAL-VGKKSAALFVFQRVNFRSYRFGWSVYKNFGNASVQLGWNGSPIDPFYDTKDDT 331
Query: 375 DIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKISKSLT 434
A S+ A++++ F G K L + T A+ S V Y + K +
Sbjct: 332 PYEDAYSNFYNANSITINAFIGKSIKNLLVQLYGKLTYSPRADAQSLGVTFKYNLKKHIY 391
Query: 435 ASVKLEYLGVMTHAGFTVGSYRP--TPGSKALYSDRSHLMTTLSAKF 479
+ + + H G+ VG + P +RS+LM+++S +F
Sbjct: 392 FMLMVNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSMSYRF 438
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 213 bits (542), Expect = 4e-54
Identities = 148/484 (30%), Positives = 237/484 (48%), Gaps = 46/484 (9%)
Query: 7 LKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQ 66
L +V+ G L L AF+Y+I SFS++ FN+ I+ +GIYPT ++VT G
Sbjct: 2 LNQKVWLGFLALH-GVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA 60
Query: 67 GNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGS--------VIYNYIGYWD 118
+ LPKG+++ H L +GG +G +AYDSTKF + + Y+G W+
Sbjct: 61 LQVDLSLLPKGIEN--HKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWE 118
Query: 119 GYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFL 178
GYL H + K ++ R Y++ N +L+Y+YKDIF
Sbjct: 119 GYL----------MQHSQNWTREQKAQNA------------RPYVLYNLYLDYQYKDIFG 156
Query: 179 AKGGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRT 238
K GRY S A ++SG+ QGFE+ + K ++ WFS++GRA A + I DFY+P
Sbjct: 157 IKLGRYPSKALFLSGFNQGFEVFYRWKK-----FRIEWFSTFGRALANEQSIRDFYAP-- 209
Query: 239 VVKNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSE 298
V + +NYG+H +N YE K + V+PF F P + +PG + +D+ + + +R +
Sbjct: 210 -VNYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQ 267
Query: 299 TKAYILLPVH-DPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYI 357
T Y P++ D L +D YR ++ G SL + QR + + FG + YK + N NA +
Sbjct: 268 TTFYAWFPLYSDYLSKDYYRASL-IGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQL 326
Query: 358 GTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLAN 417
G G+P+ + T A S+ A++++ F G K L + T A+
Sbjct: 327 GWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRAD 386
Query: 418 EASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRP--TPGSKALYSDRSHLMTTL 475
S V Y + K + + + H G+ VG + P +RS+LM+++
Sbjct: 387 SQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSM 446
Query: 476 SAKF 479
S +F
Sbjct: 447 SYRF 450
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 197 bits (502), Expect = 2e-49
Identities = 149/505 (29%), Positives = 239/505 (46%), Gaps = 93/505 (18%)
Query: 11 VFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIY 70
+F GL++ L A F+ I S++K GFN ++ ++ IYPT ++ + +G+ N+
Sbjct: 15 LFSGLFLSKLQA--YKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLS 72
Query: 71 ADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQ---------------GGSVIYNYIG 115
L KGL+ ++G + + YDST + G + + YIG
Sbjct: 73 MG-LYKGLR-------AEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIG 124
Query: 116 YWDGYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKD 175
++ G+ G ++ + L +++NAFL Y YK
Sbjct: 125 WYAGH--------SGLNVQKPRLA-----------------------MVHNAFLSYNYKK 153
Query: 176 ---IFLAKGGRYQSNA-PYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIY 231
F KGGRY + + + YTQG E K KD +L S RA A +W +
Sbjct: 154 DKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDT-----RLRVMYSDARASASSDWFW 208
Query: 232 DFYSPRTVVKNGRTLNYG--IHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPN 289
F GR G + + + YE+ + ++P+F Y+PG+ + YD+NPN
Sbjct: 209 YF---------GRYYTSGKALMIADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPN 259
Query: 290 FNGVGFRSETKAYILLPVH--DPLRRDTYRYA-IKAGTAGQSLLIRQRFDYNEFNFGGAF 346
FN GFR P+ + D + + G +GQ+ R RF YN++ FGG+
Sbjct: 260 FNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSV 319
Query: 347 YKVWKNANAYIGTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGT 406
YK NAN IG G+PLG + WTNS+YD ++++V AD ++G+++ G ++ + W
Sbjct: 320 YKNIGNANGDIGIYGDPLGYNIWTNSIYD--AEINNIVGADVINGFLYVGSQYRGFSWKI 377
Query: 407 LWRWTSGTLANEASAAVNVGYKISK-SLTASVKLEYLGVMTHAGFTV---GSYRPT---- 458
L RWT A+E S A+ + Y +K ++ +KLEY G +T G+ + G Y P
Sbjct: 378 LGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNG 437
Query: 459 PGSKAL----YSDRSHLMTTLSAKF 479
PG++ L YSDRSH+M ++ F
Sbjct: 438 PGTQPLTHNVYSDRSHIMFNITYGF 462
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 194 bits (492), Expect = 3e-48
Identities = 144/496 (29%), Positives = 234/496 (47%), Gaps = 93/496 (18%)
Query: 22 ASLQAFDYKIEV--SAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
+ LQA+ + + + S++K GFN ++ ++ IYPT ++ + +G+ N+ L KGL+
Sbjct: 37 SKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG-LYKGLR 95
Query: 80 DQGHVLEGKIGGTLGGVAYDSTKFNQ---------------GGSVIYNYIGYWDGYLGGK 124
++G + + YDST + G + + YIG++ G+
Sbjct: 96 -------AEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGH---- 144
Query: 125 RALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKD---IFLAKG 181
G + + L +++NAFL Y YK F KG
Sbjct: 145 ----SGLQVQKPRLA-----------------------MVHNAFLSYNYKKDKFSFGVKG 177
Query: 182 GRYQSNA-PYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVV 240
GRY + + + YTQG E K KD + S RA A +W + F
Sbjct: 178 GRYDAEEYDWFTSYTQGVEGFVKYKDTRFRV-----MYSDARASASSDWFWYF------- 225
Query: 241 KNGRTLNYG--IHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSE 298
GR G + + + YE+ + ++P+F Y+PG+ + YD+NPNFN GFR
Sbjct: 226 --GRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFV 283
Query: 299 TKAYILLPVH--DPLRRDTYRYA-IKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANA 355
P+ + D + + G +GQ+ R RF YN++ FGG+ YK NAN
Sbjct: 284 GTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANG 343
Query: 356 YIGTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTL 415
IG G+PLG + WTNS+YD ++++V AD ++G+++ G ++ + W L RWT
Sbjct: 344 DIGIYGDPLGYNIWTNSIYD--AEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPR 401
Query: 416 ANEASAAVNVGYKISK-SLTASVKLEYLGVMTHAGFTV---GSYRPT----PGSKAL--- 464
A+E S A+ + Y +K ++ +KLEY G +T G+ + G Y P PG++ L
Sbjct: 402 ADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN 461
Query: 465 -YSDRSHLMTTLSAKF 479
YSDRSH+M ++ F
Sbjct: 462 VYSDRSHIMFNIAYGF 477
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 171 bits (434), Expect = 1e-41
Identities = 152/538 (28%), Positives = 232/538 (42%), Gaps = 100/538 (18%)
Query: 15 LYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFL 74
L +L + SL A Y++ +FSKVGFN+ I+ +GIYPTETFV G+
Sbjct: 18 LPLLFTTGSLGAVTYEVHGDFINFSKVGFNRSPINPVKGIYPTETFVNLTGK-------- 69
Query: 75 PKGLKDQGHVLEG---KIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGYLGGKRAL---L 128
L+ H+ G +GG LGG YD+T++++ + YWD G +L +
Sbjct: 70 ---LEGSVHLGRGWTVNVGGVLGGQVYDNTRYDRWAKD-FTPPSYWDKTSCGTDSLSLCM 125
Query: 129 DGTSIHECALGSDGKVIDSIACGN---ARANKIRRNYLMNNAFL--EYRYKDIFLAK--- 180
+ T + + G +ID G N + NY NA+L R +++ A
Sbjct: 126 NATKMWQQQ--GPGGIIDPRGIGYMYMGEWNGLFPNYYPANAYLPGHSRRYEVYKANLTY 183
Query: 181 --------GGRY----QSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGE 228
GR+ Q ++ QGF + K+ KN K FSSWGR A G+
Sbjct: 184 DSDRVHMVMGRFDVTEQEQMDWIYQLFQGFYGTFKLT-KNM---KFLLFSSWGRGIADGQ 239
Query: 229 WIYDFYSPRTVVKNGRTLNYGIHLVNYTYE-RKGVSVSPFFQFSPGTYYSPGVVVGYDSN 287
W++ Y R +GIH Y K + + P+ P PG + YD+N
Sbjct: 240 WLFPIY---------REKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTN 290
Query: 288 PNFNGVGFRSETKAYILLPV---------HDPLRRDTY-------RYAIKAGTAGQSLLI 331
P F+G G R++T Y+L + P R +T+ ++ G G +L +
Sbjct: 291 PEFSGRGIRNKTTFYVLYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLYL 350
Query: 332 RQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPL---GIDFWTNSVYDIGQA-LSHVVTAD 387
D N + G Y N N +GT GNP+ GI+ W +Y +G A + ++ AD
Sbjct: 351 HHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVALDGIEQWVGGIYSLGFAGIDNITDAD 410
Query: 388 AVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKISKSLTASVKLEYLGVMTH 447
A + +V GGG H K+ W R+T+ A E + + Y+ SK + A +KL +L
Sbjct: 411 AFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIR 470
Query: 448 AGFTVGSYRPTPG--------------------------SKALYSDRSHLMTTLSAKF 479
AG+ G+ P +K++ DRSHLMT +S F
Sbjct: 471 AGYNPGTGFLGPNGQPLNLNNGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHISYSF 528
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 170 bits (431), Expect = 3e-41
Identities = 154/538 (28%), Positives = 231/538 (42%), Gaps = 100/538 (18%)
Query: 15 LYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFL 74
L +L + SL A Y++ +F+KVGFN I+ +GIYPTETFV G+
Sbjct: 18 LPLLFTTGSLGAVTYEVHGDFINFAKVGFNHSPINPVKGIYPTETFVNLTGK-------- 69
Query: 75 PKGLKDQGHVLEG---KIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGYLGGKRAL---L 128
L+ H+ G +GG LGG AYD TK+++ + YWD G ++ +
Sbjct: 70 ---LEGSVHLGRGWTVNLGGVLGGQAYDGTKYDRWAKD-FTPPSYWDKTSCGTDSMSLCM 125
Query: 129 DGTSIHECALGSDGKVIDSIACG---NARANKIRRNYLMNNAFL---EYRYK-------- 174
+ T + + + G VI+ G N + NY NA+L RY+
Sbjct: 126 NATKMWQQS--GPGGVINPRGIGWEYMGEWNGLFPNYYPANAYLPGGSRRYQVYKANLTY 183
Query: 175 --DIFLAKGGRY----QSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGE 228
D GR+ Q ++ QGF + K+ KN K FS WGR A G+
Sbjct: 184 DSDRVHMVMGRFDITEQEQMDWIYQLFQGFYGTFKLT-KNM---KFLLFSGWGRGIADGQ 239
Query: 229 WIYDFYSPRTVVKNGRTLNYGIHLVNYTYE-RKGVSVSPFFQFSPGTYYSPGVVVGYDSN 287
W++ Y R +G+H Y K + + P+ P PG + YD+N
Sbjct: 240 WLFPIY---------REKPWGVHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTN 290
Query: 288 PNFNGVGFRSETKAYILLPV---------HDPLRRDTY-------RYAIKAGTAGQSLLI 331
P F+G G R+ T Y L + P R +T+ ++ G G +LL+
Sbjct: 291 PEFSGRGIRNRTTFYALYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLLL 350
Query: 332 RQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPL---GIDFWTNSVYDIGQA-LSHVVTAD 387
R D N + G Y N N +GT GNP+ GI+ W S+Y +G A + ++ AD
Sbjct: 351 RHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGSIYSLGFAGIDNITDAD 410
Query: 388 AVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKISKSLTASVKLEYLGVMTH 447
A + +V GGG H K+ W R+T+ A E + + Y+ SK + A +KL +L
Sbjct: 411 AFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIR 470
Query: 448 AGFTVGSYRPTPG--------------------------SKALYSDRSHLMTTLSAKF 479
AG+ G+ P +K++ DRSHLMT +S F
Sbjct: 471 AGYNPGTGFLGPNGQPLNLNTGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHISYSF 528
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,166,036
Number of Sequences: 1026957
Number of extensions: 15498740
Number of successful extensions: 28719
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28612
Number of HSP's gapped (non-prelim): 22
length of query: 479
length of database: 324,149,939
effective HSP length: 125
effective length of query: 354
effective length of database: 195,780,314
effective search space: 69306231156
effective search space used: 69306231156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)