BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645699|ref|NP_207876.1| hypothetical protein
[Helicobacter pylori 26695]
         (171 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207876.1|  (NC_000915) hypothetical protein [Helicoba...   350  3e-96
ref|NP_223059.1|  (NC_000921) putative [Helicobacter pylori ...   340  5e-93

>ref|NP_207876.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64655 hypothetical protein HP1085 - Helicobacter pylori (strain 26695)
 gb|AAD08135.1| (AE000615) H. pylori predicted coding region HP1085 [Helicobacter
           pylori 26695]
          Length = 171

 Score =  350 bits (899), Expect = 3e-96
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MGLKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATH 60
           MGLKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATH
Sbjct: 1   MGLKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATH 60

Query: 61  LNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGI 120
           LNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGI
Sbjct: 61  LNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGI 120

Query: 121 LETTNRWSRAFLLAFNKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 171
           LETTNRWSRAFLLAFNKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF
Sbjct: 121 LETTNRWSRAFLLAFNKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 171



>ref|NP_223059.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71944 hypothetical protein jhp0340 - Helicobacter pylori (strain J99)
 gb|AAD05916.1| (AE001469) putative [Helicobacter pylori J99]
          Length = 169

 Score =  340 bits (871), Expect = 5e-93
 Identities = 164/169 (97%), Positives = 168/169 (99%)

Query: 3   LKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN 62
           +KNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN
Sbjct: 1   MKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN 60

Query: 63  DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGILE 122
           DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKP GSEPLWVREIT+DEFDGILE
Sbjct: 61  DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPTGSEPLWVREITRDEFDGILE 120

Query: 123 TTNRWSRAFLLAFNKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 171
           TTNRWSRAFL+AF+KLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF
Sbjct: 121 TTNRWSRAFLIAFDKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 169



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,053,998
Number of Sequences: 1026957
Number of extensions: 4770458
Number of successful extensions: 9562
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9560
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 324,149,939
effective HSP length: 112
effective length of query: 59
effective length of database: 209,130,755
effective search space: 12338714545
effective search space used: 12338714545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 93 (40.4 bits)