BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645708|ref|NP_207885.1| hypothetical protein
[Helicobacter pylori 26695]
         (118 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207885.1|  (NC_000915) hypothetical protein [Helicoba...   241  8e-64

>ref|NP_207885.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64656 hypothetical protein HP1094 - Helicobacter pylori (strain 26695)
 gb|AAD08147.1| (AE000616) H. pylori predicted coding region HP1094 [Helicobacter
           pylori 26695]
          Length = 118

 Score =  241 bits (616), Expect = 8e-64
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MCERKLLFFKSNLILSFIGTCLNAYEKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCY 60
           MCERKLLFFKSNLILSFIGTCLNAYEKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCY
Sbjct: 1   MCERKLLFFKSNLILSFIGTCLNAYEKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCY 60

Query: 61  YEKDNAVIVDKPMLINHLAIVEQGHWDKKDRNSIDNSKINILDLNYPTAKAIGLFLAS 118
           YEKDNAVIVDKPMLINHLAIVEQGHWDKKDRNSIDNSKINILDLNYPTAKAIGLFLAS
Sbjct: 61  YEKDNAVIVDKPMLINHLAIVEQGHWDKKDRNSIDNSKINILDLNYPTAKAIGLFLAS 118



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,679,815
Number of Sequences: 1026957
Number of extensions: 2880764
Number of successful extensions: 5759
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5758
Number of HSP's gapped (non-prelim): 1
length of query: 118
length of database: 324,149,939
effective HSP length: 94
effective length of query: 24
effective length of database: 227,615,981
effective search space: 5462783544
effective search space used: 5462783544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)