BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644741|ref|NP_206911.1| hypothetical protein
[Helicobacter pylori 26695]
(276 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206911.1| (NC_000915) hypothetical protein [Helicoba... 537 e-152
sp|O24933|HRCA_HELPY Heat-inducible transcription repressor... 519 e-146
ref|NP_222824.1| (NC_000921) putative [Helicobacter pylori ... 486 e-136
ref|NP_281918.1| (NC_002163) putative heat shock regulator ... 94 1e-18
ref|NP_488084.1| (NC_003272) heat-inducible transcriptional... 62 5e-09
ref|NP_444804.1| (NC_002179) heat shock gene repressor HrcA... 60 3e-08
ref|NP_224697.1| (NC_000922) HTH Transcriptional Repressor ... 60 3e-08
sp|P71498|HRCA_MYCCA Heat-inducible transcription repressor... 60 3e-08
gb|AAA97480.1| (U52216) Possible negative regulator of CIRC... 59 6e-08
ref|NP_297047.1| (NC_002620) heat shock gene repressor HcrA... 59 6e-08
gb|AAD23452.1| (AF117740) heat shock transcription represso... 58 1e-07
ref|NP_358047.1| (NC_003098) Heat inducible transcription r... 58 1e-07
ref|NP_228660.1| (NC_000853) heat shock operon repressor Hr... 58 1e-07
ref|NP_345033.1| (NC_003028) heat-inducible transcription r... 58 1e-07
ref|NP_562951.1| (NC_003366) heat-inducible transcriptional... 56 5e-07
gb|AAA23162.1| (L25105) has homology to putative heat shock... 56 5e-07
ref|NP_216890.1| (NC_000962) hrcA [Mycobacterium tuberculos... 55 6e-07
ref|NP_219904.1| (NC_000117) HTH Transcriptional Repressor ... 55 8e-07
ref|NP_626793.1| (NC_003888) heat-inducible transcriptional... 55 1e-06
dbj|BAB99684.1| (AP005281) Transcriptional regulator of hea... 54 1e-06
pir||S72585 ygrp protein - Mycobacterium leprae >gi|466967|... 54 1e-06
ref|NP_301517.1| (NC_002677) putative heat-inducible transc... 54 1e-06
ref|NP_601491.1| (NC_003450) COG1420:Transcriptional regula... 54 2e-06
ref|NP_347911.1| (NC_003030) Transcriptional regulator of h... 52 5e-06
dbj|BAB63288.1| (AB070346) HrcA [Tetragenococcus halophilus] 52 7e-06
ref|NP_269782.1| (NC_002737) putative heat shock transcript... 51 1e-05
ref|NP_607852.1| (NC_003485) putative heat shock transcript... 51 1e-05
ref|NP_622605.1| (NC_003869) Transcriptional regulator of h... 50 2e-05
ref|NP_440130.1| (NC_000911) CIRCE binding repressor [Synec... 50 4e-05
ref|NP_299621.1| (NC_002488) heat-inducible transcriptional... 50 4e-05
ref|NP_603023.1| (NC_003454) Heat-inducible transcription r... 50 4e-05
ref|NP_242210.1| (NC_002570) transcriptional repressor of c... 49 5e-05
sp|O52163|HRCA_STRAL Heat-inducible transcription repressor... 49 8e-05
ref|NP_662371.1| (NC_002932) heat-inducible transcription r... 48 1e-04
ref|NP_078257.1| (NC_002162) heat-inducible transcription r... 47 2e-04
sp|O06940|HRCA_STRMU Heat-inducible transcription repressor... 47 2e-04
ref|NP_372106.1| (NC_002758) Heat-inducible transcriptional... 47 3e-04
ref|NP_646351.1| (NC_003923) Heat-inducible transcriptional... 47 3e-04
sp|O51867|HRCA_LEPIN Heat-inducible transcription repressor... 46 4e-04
ref|NP_267108.1| (NC_002662) heat-inducible transcription r... 46 4e-04
ref|NP_470848.1| (NC_003212) transcription repressor of cla... 46 5e-04
sp|O87775|HRCA_LACSK Heat-inducible transcription repressor... 46 5e-04
ref|NP_465000.1| (NC_003210) transcription repressor of cla... 45 7e-04
ref|NP_390427.1| (NC_000964) transcriptional regulator [Bac... 45 7e-04
sp|P42370|HRCA_LACLC Heat-inducible transcription repressor... 45 7e-04
ref|NP_641853.1| (NC_003919) heat-inducible transcriptional... 45 7e-04
ref|NP_384483.1| (NC_003047) PROBABLE HEAT-INDUCIBLE TRANSC... 45 9e-04
sp|Q9REF2|HRCA_BRAJA Heat-inducible transcription repressor... 45 9e-04
ref|NP_636844.1| (NC_003902) heat-inducible transcriptional... 45 9e-04
gb|AAG53934.2|AF302775_1 (AF302775) HrcA [Xanthomonas campe... 45 9e-04
ref|NP_540693.1| (NC_003317) HEAT-INDUCIBLE TRANSCRIPTION R... 45 0.001
ref|NP_353360.1| (NC_003062) AGR_C_572p [Agrobacterium tume... 45 0.001
ref|NP_105447.1| (NC_002678) repressor protein of class I h... 44 0.001
gb|AAM43820.1|AF281816_1 (AF281816) HrcA [Acholeplasma laid... 44 0.003
ref|NP_109812.1| (NC_000912) protein (hrcA) homolog; simila... 42 0.006
ref|NP_520770.1| (NC_003295) PROBABLE HEAT-INDUCIBLE TRANSC... 42 0.006
sp|Q45550|HRCA_BACST Heat-inducible transcription repressor... 42 0.007
sp|O69266|HRCA_BACSH Heat-inducible transcription repressor... 42 0.007
dbj|BAB20746.1| (AB039833) HrcA [Geobacillus thermoglucosid... 42 0.007
ref|NP_658348.1| (NC_003995) HrcA, HrcA protein C terminal ... 42 0.010
>ref|NP_206911.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64533 hypothetical protein HP0111 - Helicobacter pylori (strain 26695)
gb|AAD07182.1| (AE000532) H. pylori predicted coding region HP0111 [Helicobacter
pylori 26695]
Length = 276
Score = 537 bits (1384), Expect = e-152
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MVIDEIFQIMMLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATI 60
MVIDEIFQIMMLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATI
Sbjct: 1 MVIDEIFQIMMLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATI 60
Query: 61 RNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFT 120
RNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFT
Sbjct: 61 RNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFT 120
Query: 121 LLKKPSLERLERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASF 180
LLKKPSLERLERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASF
Sbjct: 121 LLKKPSLERLERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASF 180
Query: 181 NALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCM 240
NALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCM
Sbjct: 181 NALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCM 240
Query: 241 LVTRPVEFQNKRMQLLCVGKLECDYEGFFQTISEEE 276
LVTRPVEFQNKRMQLLCVGKLECDYEGFFQTISEEE
Sbjct: 241 LVTRPVEFQNKRMQLLCVGKLECDYEGFFQTISEEE 276
>sp|O24933|HRCA_HELPY Heat-inducible transcription repressor hrcA homolog
Length = 266
Score = 519 bits (1336), Expect = e-146
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 11 MLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKE 70
MLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKE
Sbjct: 1 MLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKE 60
Query: 71 GMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFTLLKKPSLERL 130
GMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFTLLKKPSLERL
Sbjct: 61 GMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFTLLKKPSLERL 120
Query: 131 ERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASFNALSLARQLE 190
ERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASFNALSLARQLE
Sbjct: 121 ERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASFNALSLARQLE 180
Query: 191 RLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCMLVTRPVEFQN 250
RLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCMLVTRPVEFQN
Sbjct: 181 RLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCMLVTRPVEFQN 240
Query: 251 KRMQLLCVGKLECDYEGFFQTISEEE 276
KRMQLLCVGKLECDYEGFFQTISEEE
Sbjct: 241 KRMQLLCVGKLECDYEGFFQTISEEE 266
>ref|NP_222824.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMW2|HRCA_HELPJ Heat-inducible transcription repressor hrcA homolog
pir||A71974 hypothetical protein jhp0103 - Helicobacter pylori (strain J99)
gb|AAD05682.1| (AE001449) putative [Helicobacter pylori J99]
Length = 266
Score = 486 bits (1251), Expect = e-136
Identities = 247/266 (92%), Positives = 257/266 (95%)
Query: 11 MLRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKE 70
ML+RIKVGS+LNKKESLLDAFVKTYLQ LEPISSKRLKELA+LK+SCATIRNYFQILSKE
Sbjct: 1 MLKRIKVGSDLNKKESLLDAFVKTYLQTLEPISSKRLKELANLKVSCATIRNYFQILSKE 60
Query: 71 GMLYQAHSSGARLPTFKAFENYWQKSLRFETLKVNEKRLKSASENFGLFTLLKKPSLERL 130
GML+QAHSSGARLPTFKAFENYW KSLRFE LKVNEKRLKSASENFGLFTLLKKPSLERL
Sbjct: 61 GMLHQAHSSGARLPTFKAFENYWHKSLRFEVLKVNEKRLKSASENFGLFTLLKKPSLERL 120
Query: 131 ERVIECEKRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASFNALSLARQLE 190
ERVIECEKRFLILDFLAFSCA+GYSVKMEKFLLELVGRSVKEVR IAAS NALSLARQLE
Sbjct: 121 ERVIECEKRFLILDFLAFSCAVGYSVKMEKFLLELVGRSVKEVRLIAASVNALSLARQLE 180
Query: 191 RLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHFIEPDCMLVTRPVEFQN 250
RLEYS+ QITRFNLMGLKTLLNSPLFFDIL GKVLER KGLHFIEPDCMLVTRP+EFQN
Sbjct: 181 RLEYSSAQITRFNLMGLKTLLNSPLFFDILEGKVLERFKKGLHFIEPDCMLVTRPIEFQN 240
Query: 251 KRMQLLCVGKLECDYEGFFQTISEEE 276
+RMQLLCVGKLECDYEGFFQTIS+EE
Sbjct: 241 ERMQLLCVGKLECDYEGFFQTISKEE 266
>ref|NP_281918.1| (NC_002163) putative heat shock regulator [Campylobacter jejuni]
sp|Q9PPG2|HRCA_CAMJE Heat-inducible transcription repressor hrcA homolog
pir||E81346 probable heat shock regulator Cj0757 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73022.1| (AL139076) putative heat shock regulator [Campylobacter jejuni]
Length = 264
Score = 94.4 bits (233), Expect = 1e-18
Identities = 70/260 (26%), Positives = 118/260 (44%), Gaps = 10/260 (3%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
+KK+ +L++ ++TYL PI S L ++L I +TIR Y + LS EG++ Q H S
Sbjct: 6 DKKDLILESIIQTYLLDNAPIGSNELN--SNLCIPASTIRVYLKRLSDEGLITQLHISSG 63
Query: 82 RLPTFKAFENYWQKSLRFETLK----VNEKRLKSASENFGLFTLLKKPSLERLERVIECE 137
R+PT +NYWQ E K NE LK S+ F ++ L+ L+ V++
Sbjct: 64 RIPTILTMQNYWQNFWEKEQDKNIHIKNESFLKELSKEFEIYCLVYGGRSLVLKEVLDLN 123
Query: 138 KRFLILDFLAFSCALGYSVKMEKFLLELVGRSVKEVRSIAASFNALSLARQLERLEYSNT 197
+F++LDF L Y + FL L+G + + IA + + L ++ L N
Sbjct: 124 TKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIEKIALRVHFIDLVEKIASLR-QNL 182
Query: 198 QITRFNLMGLKTLLNSPLFFDILGGKVLERLSKGLHF---IEPDCMLVTRPVEFQNKRMQ 254
R N + + F +L ++ + L F + M + +F + +
Sbjct: 183 ICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLEFEPLFKEGFMGLKVDAQFLGEDVN 242
Query: 255 LLCVGKLECDYEGFFQTISE 274
++ G + DY+ Q I E
Sbjct: 243 IILAGSVYTDYKKILQYIKE 262
>ref|NP_488084.1| (NC_003272) heat-inducible transcriptional repressor [Nostoc sp.
PCC 7120]
sp|Q8YPZ6|HRCA_ANASP Heat-inducible transcription repressor hrcA
dbj|BAB75743.1| (AP003595) heat-inducible transcriptional repressor [Nostoc sp.
PCC 7120]
Length = 365
Score = 62.4 bits (150), Expect = 5e-09
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
N+++ +L A V+ Y+ EP+ SK L E DL +S ATIRN +L K G+LYQ H+S
Sbjct: 7 NRQQHILWATVRHYIATAEPVGSKALVEEYDLGVSSATIRNVMGVLEKSGLLYQPHTSAG 66
Query: 82 RLPTFKAFENY 92
R+P+ + Y
Sbjct: 67 RVPSDSGYRIY 77
>ref|NP_444804.1| (NC_002179) heat shock gene repressor HrcA [Chlamydophila
pneumoniae AR39]
pir||B81598 heat shock gene repressor HrcA CP0253 [imported] - Chlamydophila
pneumoniae (strain AR39)
gb|AAF38116.1| (AE002185) heat shock gene repressor HrcA [Chlamydophila pneumoniae
AR39]
Length = 407
Score = 59.7 bits (143), Expect = 3e-08
Identities = 34/81 (41%), Positives = 46/81 (55%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ R KV +K +L A + YL+ +P+ SK LKE +S ATIRNYF L EG
Sbjct: 22 MARSKVSKRDSKILDILFATTELYLKTGQPVGSKTLKESFCSDLSTATIRNYFAELEAEG 81
Query: 72 MLYQAHSSGARLPTFKAFENY 92
L + H+SG R+PT A +Y
Sbjct: 82 FLKKNHTSGGRIPTDLALRHY 102
>ref|NP_224697.1| (NC_000922) HTH Transcriptional Repressor [Chlamydophila
pneumoniae CWL029]
ref|NP_300556.1| (NC_002491) HTH transcriptional repressor [Chlamydophila
pneumoniae J138]
sp|Q9Z850|HRCA_CHLPN Heat-inducible transcription repressor hrcA
pir||G72070 hth transcription repressor - Chlamydophila pneumoniae (strain
CWL029)
gb|AAD18641.1| (AE001635) HTH Transcriptional Repressor [Chlamydophila
pneumoniae CWL029]
dbj|BAA98707.1| (AP002546) HTH transcriptional repressor [Chlamydophila
pneumoniae J138]
Length = 398
Score = 59.7 bits (143), Expect = 3e-08
Identities = 34/81 (41%), Positives = 46/81 (55%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ R KV +K +L A + YL+ +P+ SK LKE +S ATIRNYF L EG
Sbjct: 13 MARSKVSKRDSKILDILFATTELYLKTGQPVGSKTLKESFCSDLSTATIRNYFAELEAEG 72
Query: 72 MLYQAHSSGARLPTFKAFENY 92
L + H+SG R+PT A +Y
Sbjct: 73 FLKKNHTSGGRIPTDLALRHY 93
>sp|P71498|HRCA_MYCCA Heat-inducible transcription repressor hrcA
gb|AAB09428.1| (U51235) OrfA [Mycoplasma capricolum]
Length = 334
Score = 59.7 bits (143), Expect = 3e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L V+ +++ +P+ SKR+ EL D+KIS ATIRN IL EG L + H+S R
Sbjct: 5 RQVKILQTIVEEFIKTNQPVGSKRILELLDIKISSATIRNESAILEHEGYLEKQHTSSGR 64
Query: 83 LPTFKAFENYWQKSLRFET 101
P+ K + Y ++ ++
Sbjct: 65 TPSTKGYRYYVDNIMKLDS 83
>gb|AAA97480.1| (U52216) Possible negative regulator of CIRCE element; Homologs in
B. subtilis and Clostridia spp. referred to as hrcA or
orfA [Chlamydia trachomatis]
Length = 392
Score = 58.9 bits (141), Expect = 6e-08
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ +++ +K +L +K YL+ +P+ SK LKE +S ATIRNYF L +G
Sbjct: 7 MSQLRASKKDSKISHVLLMAIKLYLESGQPVGSKLLKETYCSDLSSATIRNYFAQLETDG 66
Query: 72 MLYQAHSSGARLPT---FKAFENYWQKSLRFETLKVNEKRLKSASE 114
L + H SG R+PT F+ + ++ L E + + +++LK E
Sbjct: 67 FLRKNHISGGRIPTDLAFRYYADHCSPVLEQEEISIIQQKLKELPE 112
>ref|NP_297047.1| (NC_002620) heat shock gene repressor HcrA [Chlamydia muridarum]
sp|P54306|HRCA_CHLMU Heat-inducible transcription repressor hrcA
pir||F81676 heat shock gene repressor HcrA TC0673 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39494.1| (AE002336) heat shock gene repressor HcrA [Chlamydia muridarum]
Length = 392
Score = 58.9 bits (141), Expect = 6e-08
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ +++ +K +L +K YL+ +P+ SK LKE +S ATIRNYF L +G
Sbjct: 7 MSQLRASKKDSKISHVLLMAIKLYLESGQPVGSKLLKETYCSDLSSATIRNYFAQLETDG 66
Query: 72 MLYQAHSSGARLPT---FKAFENYWQKSLRFETLKVNEKRLKSASE 114
L + H SG R+PT F+ + ++ L E + + +++LK E
Sbjct: 67 FLRKNHISGGRIPTDLAFRYYADHCSPVLEQEEISIIQQKLKELPE 112
>gb|AAD23452.1| (AF117740) heat shock transcription repressor HrcA [Streptococcus
pneumoniae]
Length = 344
Score = 58.2 bits (139), Expect = 1e-07
Identities = 33/80 (41%), Positives = 48/80 (59%), Gaps = 6/80 (7%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
++D F KT+ EP+ SK L+E + S ATIRN L K+G+L +AH+S R+P+
Sbjct: 13 IIDIFTKTH----EPVGSKALQE--SINSSSATIRNDMAELEKQGLLEKAHTSSGRMPSV 66
Query: 87 KAFENYWQKSLRFETLKVNE 106
F+ Y + SL F+ L NE
Sbjct: 67 AGFQYYVKHSLDFDRLAENE 86
>ref|NP_358047.1| (NC_003098) Heat inducible transcription repressor [Streptococcus
pneumoniae R6]
gb|AAK99257.1| (AE008425) Heat inducible transcription repressor [Streptococcus
pneumoniae R6]
Length = 355
Score = 58.2 bits (139), Expect = 1e-07
Identities = 33/80 (41%), Positives = 48/80 (59%), Gaps = 6/80 (7%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
++D F KT+ EP+ SK L+E + S ATIRN L K+G+L +AH+S R+P+
Sbjct: 24 IIDIFTKTH----EPVGSKALQE--SINSSSATIRNDMAELEKQGLLEKAHTSSGRMPSV 77
Query: 87 KAFENYWQKSLRFETLKVNE 106
F+ Y + SL F+ L NE
Sbjct: 78 AGFQYYVKHSLDFDRLAENE 97
>ref|NP_228660.1| (NC_000853) heat shock operon repressor HrcA [Thermotoga
maritima]
sp|Q9WZV5|HRCA_THEMA Heat-inducible transcription repressor hrcA homolog
pir||D72327 heat shock operon repressor HrcA - Thermotoga maritima (strain
MSB8)
gb|AAD35933.1|AE001751_13 (AE001751) heat shock operon repressor HrcA [Thermotoga maritima]
Length = 338
Score = 58.2 bits (139), Expect = 1e-07
Identities = 26/77 (33%), Positives = 50/77 (64%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
+++ +L V+ Y++ +P+SS+R+ E+++++ S ATIRN + L G +YQ H+S
Sbjct: 17 DRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAG 76
Query: 82 RLPTFKAFENYWQKSLR 98
R+PT K Y+++ L+
Sbjct: 77 RIPTDKGLRFYYEEMLK 93
>ref|NP_345033.1| (NC_003028) heat-inducible transcription repressor HrcA
[Streptococcus pneumoniae TIGR4]
sp|Q9X4R2|HRCA_STRPN Heat-inducible transcription repressor hrcA
gb|AAK74673.1| (AE007363) heat-inducible transcription repressor HrcA
[Streptococcus pneumoniae TIGR4]
Length = 344
Score = 58.2 bits (139), Expect = 1e-07
Identities = 33/80 (41%), Positives = 48/80 (59%), Gaps = 6/80 (7%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
++D F KT+ EP+ SK L+E + S ATIRN L K+G+L +AH+S R+P+
Sbjct: 13 IIDIFTKTH----EPVGSKALQE--SINSSSATIRNDMAELEKQGLLEKAHTSSGRMPSV 66
Query: 87 KAFENYWQKSLRFETLKVNE 106
F+ Y + SL F+ L NE
Sbjct: 67 AGFQYYVKHSLDFDRLAENE 86
>ref|NP_562951.1| (NC_003366) heat-inducible transcriptional repressor [Clostridium
perfringens]
sp|Q8XIS9|HRCA_CLOPE Heat-inducible transcription repressor hrcA
dbj|BAB81741.1| (AP003192) heat-inducible transcriptional repressor [Clostridium
perfringens]
Length = 339
Score = 55.8 bits (133), Expect = 5e-07
Identities = 28/88 (31%), Positives = 48/88 (53%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++K +L A ++ Y+ EP+ S+ + + +L +S ATIRN L G L Q H+S
Sbjct: 4 DRKLQILRAIIQDYISTGEPVGSRTIAKKYNLGVSSATIRNEMADLEDMGFLEQPHTSAG 63
Query: 82 RLPTFKAFENYWQKSLRFETLKVNEKRL 109
R+P+ + + Y + + FE L E+ L
Sbjct: 64 RIPSSRGYRLYVDRMIEFERLSSEEEGL 91
>gb|AAA23162.1| (L25105) has homology to putative heat shock proteins of Bacillus
subtilis and Clostridium acetobutylicum; ORFA; putative
[Chlamydia trachomatis]
prf||2016314C ORF A [Chlamydia trachomatis]
Length = 392
Score = 55.8 bits (133), Expect = 5e-07
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ +++ +K +L K YL+ +P+ SK LKE +S ATIRNYF L +G
Sbjct: 7 MSQLRASKKDSKISYVLLMATKLYLESGQPVGSKLLKETYCSDLSSATIRNYFAQLETDG 66
Query: 72 MLYQAHSSGARLPTFKAFENYWQKSLRF----ETLKVNEK 107
L + H SG R+PT AF Y + F E L + +K
Sbjct: 67 FLRKNHISGGRIPTDLAFRYYADHNAPFLEQEEILAIQQK 106
>ref|NP_216890.1| (NC_000962) hrcA [Mycobacterium tuberculosis H37Rv]
ref|NP_336923.1| (NC_002755) heat shock gene transcriptional repressor HrcA
[Mycobacterium tuberculosis CDC1551]
sp|O05824|HRCA_MYCTU Heat-inducible transcription repressor hrcA
pir||E70587 probable hrcA protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB08478.1| (Z95208) hrcA [Mycobacterium tuberculosis H37Rv]
gb|AAK46737.1| (AE007083) heat shock gene transcriptional repressor HrcA
[Mycobacterium tuberculosis CDC1551]
Length = 343
Score = 55.5 bits (132), Expect = 6e-07
Identities = 31/92 (33%), Positives = 49/92 (52%)
Query: 17 VGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQA 76
+GS ++ +L A V ++ EPI SK L E +L +S AT+RN +L EG + Q
Sbjct: 1 MGSADERRFEVLRAIVADFVATQEPIGSKSLVERHNLGVSSATVRNDMAVLEAEGYITQP 60
Query: 77 HSSGARLPTFKAFENYWQKSLRFETLKVNEKR 108
H+S R+PT K + + + + L E+R
Sbjct: 61 HTSSGRVPTEKGYREFVDRLEDVKPLSSAERR 92
>ref|NP_219904.1| (NC_000117) HTH Transcriptional Repressor [Chlamydia trachomatis]
sp|P36426|HRCA_CHLTR Heat-inducible transcription repressor hrcA
pir||H71520 probable hth transcription repressor - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC67991.1| (AE001312) HTH Transcriptional Repressor [Chlamydia trachomatis]
Length = 392
Score = 55.1 bits (131), Expect = 8e-07
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 12 LRRIKVGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEG 71
+ +++ +K +L K YL+ +P+ SK LKE +S ATIRNYF L +G
Sbjct: 7 MSQLRASKKDSKISYVLLMATKLYLEGGQPVGSKLLKETYCSDLSSATIRNYFAQLETDG 66
Query: 72 MLYQAHSSGARLPTFKAFENYWQKSLRF----ETLKVNEK 107
L + H SG R+PT AF Y + F E L + +K
Sbjct: 67 FLRKNHISGGRIPTDLAFRYYADHNAPFLEQEEILAIQQK 106
>ref|NP_626793.1| (NC_003888) heat-inducible transcriptional repressor HrcA.
[Streptomyces coelicolor A3(2)]
sp|Q9RDD6|HRCA_STRCO Heat-inducible transcription repressor hrcA
emb|CAB66233.1| (AL136503) heat-inducible transcriptional repressor HrcA.
[Streptomyces coelicolor A3(2)]
Length = 338
Score = 54.7 bits (130), Expect = 1e-06
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L A V+ Y+ EP+ SK L E +L +S AT+RN L EG + Q H+S R
Sbjct: 5 RRLKVLRAIVQDYVGTEEPVGSKALTERHNLGVSPATVRNDMAALEDEGFIAQPHTSAGR 64
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKRLKSASENF 116
+PT K + + K + + E+R A +NF
Sbjct: 65 IPTDKGYRLFVDKLAGVKPMTAPERR---AIQNF 95
>dbj|BAB99684.1| (AP005281) Transcriptional regulator of heat shock gene
[Corynebacterium glutamicum ATCC 13032]
Length = 341
Score = 54.3 bits (129), Expect = 1e-06
Identities = 28/86 (32%), Positives = 45/86 (51%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L A V Y+ EP+ SK L E L +S ATIRN +L +G + Q H+S R
Sbjct: 7 RRYEVLRAIVADYIASQEPVGSKSLLERHKLNVSSATIRNDMSVLESDGFIVQEHASSGR 66
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKR 108
+PT + + + + L + E+R
Sbjct: 67 VPTERGYRLFVDSIHDIKPLSLAERR 92
>pir||S72585 ygrp protein - Mycobacterium leprae
gb|AAA17153.1| (U00016) ygrp; B1937_F1_18 [Mycobacterium leprae]
Length = 197
Score = 54.3 bits (129), Expect = 1e-06
Identities = 30/92 (32%), Positives = 49/92 (52%)
Query: 17 VGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQA 76
+G+ ++ +L A V ++ EPI S+ L E +L +S ATIRN +L EG + Q
Sbjct: 1 MGNADERRFEVLRAIVADFVATKEPIGSRALVERHNLGVSSATIRNDMAVLEAEGYITQP 60
Query: 77 HSSGARLPTFKAFENYWQKSLRFETLKVNEKR 108
H+S R+PT K + + + + L E+R
Sbjct: 61 HTSSGRVPTEKGYREFVDRLEDVKPLSAAERR 92
>ref|NP_301517.1| (NC_002677) putative heat-inducible transcription repressor
[Mycobacterium leprae]
sp|Q9CCN2|HRCA_MYCLE Heat-inducible transcription repressor hrcA
emb|CAC30132.1| (AL583919) putative heat-inducible transcription repressor
[Mycobacterium leprae]
Length = 343
Score = 54.3 bits (129), Expect = 1e-06
Identities = 30/92 (32%), Positives = 49/92 (52%)
Query: 17 VGSNLNKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQA 76
+G+ ++ +L A V ++ EPI S+ L E +L +S ATIRN +L EG + Q
Sbjct: 1 MGNADERRFEVLRAIVADFVATKEPIGSRALVERHNLGVSSATIRNDMAVLEAEGYITQP 60
Query: 77 HSSGARLPTFKAFENYWQKSLRFETLKVNEKR 108
H+S R+PT K + + + + L E+R
Sbjct: 61 HTSSGRVPTEKGYREFVDRLEDVKPLSAAERR 92
>ref|NP_601491.1| (NC_003450) COG1420:Transcriptional regulator of heat shock gene
[Corynebacterium glutamicum]
Length = 331
Score = 53.9 bits (128), Expect = 2e-06
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L A V Y+ EP+ SK L E L +S ATIRN +L +G + Q H+S R+PT
Sbjct: 1 MLRAIVADYIASQEPVGSKSLLERHKLNVSSATIRNDMSVLESDGFIVQEHASSGRVPTE 60
Query: 87 KAFENYWQKSLRFETLKVNEKR 108
+ + + + L + E+R
Sbjct: 61 RGYRLFVDSIHDIKPLSLAERR 82
>ref|NP_347911.1| (NC_003030) Transcriptional regulator of heat shock genes, HrcA
[Clostridium acetobutylicum]
sp|P30727|HRCA_CLOAB Heat-inducible transcription repressor hrcA
pir||D41873 grpE 5'-region heat shock inducible protein - Clostridium
acetobutylicum
gb|AAA23244.1| (M74569) ORF [Clostridium acetobutylicum]
gb|AAK79251.1|AE007640_6 (AE007640) Transcriptional regulator of heat shock genes, HrcA
[Clostridium acetobutylicum]
Length = 343
Score = 52.4 bits (124), Expect = 5e-06
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+K +L A + Y+ EP+ S+ + + +L IS ATIRN L + G + Q H+S R
Sbjct: 6 RKLKILQAIINDYINNGEPVGSRTIAKKYNLGISSATIRNEMADLEEMGYIEQLHTSSGR 65
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKRLKSA 112
P+ K + Y + + ++ V E+ L A
Sbjct: 66 KPSDKGYRLYVDRLMEIPSMSVEEEMLIKA 95
>dbj|BAB63288.1| (AB070346) HrcA [Tetragenococcus halophilus]
Length = 345
Score = 52.0 bits (123), Expect = 7e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+++++L + Y + +PI SK L E + S ATIRN + L + G+L + HSS R
Sbjct: 5 RQDNILHQIIHNYTNLGKPIGSKTLME-EGIAASSATIRNEMKTLEEYGLLVKPHSSSGR 63
Query: 83 LPTFKAFENYWQKSLRFETLKVNE 106
+P+ K + Y L E LK +E
Sbjct: 64 IPSLKGYRYYVDYLLEPEKLKKSE 87
>ref|NP_269782.1| (NC_002737) putative heat shock transcription repressor protein
[Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS]
sp|Q99YC7|HRCA_STRPY Heat-inducible transcription repressor hrcA
gb|AAK34503.1| (AE006604) putative heat shock transcription repressor protein
[Streptococcus pyogenes M1 GAS]
Length = 344
Score = 51.2 bits (121), Expect = 1e-05
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L+ V+ + Q EP+ SK L+ D S ATIRN L K G+L +AH+S R
Sbjct: 5 RQNDILNLIVELFTQTHEPVGSKALQRTIDS--SSATIRNDMAKLEKLGLLEKAHTSSGR 62
Query: 83 LPTFKAFENYWQKSLRFETL 102
+P+ F+ + + SLR +++
Sbjct: 63 MPSPAGFKYFVEHSLRLDSI 82
>ref|NP_607852.1| (NC_003485) putative heat shock transcription repressor protein
[Streptococcus pyogenes MGAS8232]
gb|AAL98351.1| (AE010089) putative heat shock transcription repressor protein
[Streptococcus pyogenes MGAS8232]
Length = 344
Score = 51.2 bits (121), Expect = 1e-05
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L+ V+ + Q EP+ SK L+ D S ATIRN L K G+L +AH+S R
Sbjct: 5 RQNDILNLIVELFTQTHEPVGSKALQRTIDS--SSATIRNDMAKLEKLGLLEKAHTSSGR 62
Query: 83 LPTFKAFENYWQKSLRFETL 102
+P+ F+ + + SLR +++
Sbjct: 63 MPSPAGFKYFVEHSLRLDSI 82
>ref|NP_622605.1| (NC_003869) Transcriptional regulator of heat shock gene
[Thermoanaerobacter tengcongensis]
gb|AAM24209.1| (AE013061) Transcriptional regulator of heat shock gene
[Thermoanaerobacter tengcongensis]
Length = 343
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++K+ +L A V Y+ EPI S+ + + ++ IS ATIRN L + G L Q H+S
Sbjct: 5 DRKKRILFAVVTDYIMTAEPIGSRTIAKKYNMGISSATIRNEMADLEEMGYLEQPHTSAG 64
Query: 82 RLPTFKAFENY 92
R+P+ K + Y
Sbjct: 65 RIPSDKGYRFY 75
>ref|NP_440130.1| (NC_000911) CIRCE binding repressor [Synechocystis sp. PCC 6803]
sp|P72795|HRCA_SYNY3 Heat-inducible transcription repressor hrcA homolog
pir||JC5689 CIRCE binding repressor HrcA - Synechocystis sp. (strain PCC
6803)
dbj|BAA16810.1| (D90900) CIRCE binding repressor [Synechocystis sp. PCC 6803]
Length = 378
Score = 49.7 bits (117), Expect = 4e-05
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++ + +L A V+ Y+ EP+ S L + +S ATIRN L K G+LYQ H S
Sbjct: 9 DRHQQILRATVQHYIATAEPVGSHTLAQEYQFAVSSATIRNALGQLEKAGLLYQPHVSAG 68
Query: 82 RLPTFKAFENY 92
R+P+ + Y
Sbjct: 69 RVPSDSGYRIY 79
>ref|NP_299621.1| (NC_002488) heat-inducible transcriptional repressor [Xylella
fastidiosa 9a5c]
sp|Q9PB03|HRCA_XYLFA Heat-inducible transcription repressor hrcA
pir||A82571 heat-inducible transcription repressor XF2342 [imported] -
Xylella fastidiosa (strain 9a5c)
gb|AAF85141.1|AE004044_12 (AE004044) heat-inducible transcriptional repressor [Xylella
fastidiosa 9a5c]
Length = 367
Score = 49.7 bits (117), Expect = 4e-05
Identities = 26/71 (36%), Positives = 38/71 (52%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++ LL + Y+Q EP+ SK L + A L IS ATIRN L + G+L H+S
Sbjct: 29 SRSRQLLRTLISCYIQNGEPVGSKTLAQQAGLDISPATIRNILADLEELGLLNSPHTSAG 88
Query: 82 RLPTFKAFENY 92
R+PT + +
Sbjct: 89 RVPTAHGYRMF 99
>ref|NP_603023.1| (NC_003454) Heat-inducible transcription repressor hrcA
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94322.1| (AE010525) Heat-inducible transcription repressor hrcA
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 351
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/109 (28%), Positives = 59/109 (53%), Gaps = 7/109 (6%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+++ +L+A V YL + + I S+ L + +++S ATIRN L G + + H+S R
Sbjct: 17 REKLVLNAIVDYYLTVGDTIGSRTLVKKYGIELSSATIRNVMADLEDMGFIEKTHTSSGR 76
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKRLKSASENFG-----LFTLLKKPS 126
+PT ++ Y + L+ E K+ ++ +++ S + L +LKK S
Sbjct: 77 IPTDMGYKYYLTELLKVE--KITQEEIENISNVYNRRVDELENILKKTS 123
>ref|NP_242210.1| (NC_002570) transcriptional repressor of class I heat-shock genes
[Bacillus halodurans]
sp|Q9KD74|HRCA_BACHD Heat-inducible transcription repressor hrcA
dbj|BAB05063.1| (AP001511) transcriptional repressor of class I heat-shock genes
[Bacillus halodurans]
Length = 343
Score = 49.3 bits (116), Expect = 5e-05
Identities = 24/66 (36%), Positives = 37/66 (55%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L A V Y++ EP+ S+ + + D+ S ATIRN L + G L + HSS R+P+
Sbjct: 9 ILQAIVDDYIRSAEPVGSRSISKREDITFSPATIRNEMADLEELGFLEKPHSSAGRIPSQ 68
Query: 87 KAFENY 92
K + Y
Sbjct: 69 KGYRYY 74
>sp|O52163|HRCA_STRAL Heat-inducible transcription repressor hrcA
gb|AAC62528.1| (AF025656) HrcA [Streptomyces albus G]
Length = 338
Score = 48.5 bits (114), Expect = 8e-05
Identities = 27/86 (31%), Positives = 44/86 (50%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L A V+ Y+ EP+ SK L E L +S AT+RN L EG + Q H+S
Sbjct: 5 RRLEVLRAIVQDYVGTEEPVGSKALTERHRLGVSPATVRNDMAALEDEGYIAQPHTSAGP 64
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKR 108
+PT K + + + + + E+R
Sbjct: 65 IPTDKGYRLFVDRLADVKPMTAPERR 90
>ref|NP_662371.1| (NC_002932) heat-inducible transcription repressor HrcA [Chlorobium
tepidum TLS]
gb|AAM72713.1| (AE012905) heat-inducible transcription repressor HrcA [Chlorobium
tepidum TLS]
Length = 356
Score = 48.1 bits (113), Expect = 1e-04
Identities = 24/87 (27%), Positives = 44/87 (49%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L +++Y+ P+ S+ + +L +S ATIRN L +G + Q H+S R
Sbjct: 9 RERQVLGIIIQSYVVSAMPVGSRTIARNYNLGLSDATIRNVMADLEADGFISQPHTSAGR 68
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKRL 109
+PT K + Y + + EKR+
Sbjct: 69 VPTDKGYRYYVDLIMNVSRIDEEEKRM 95
>ref|NP_078257.1| (NC_002162) heat-inducible transcription repressor [Ureaplasma
urealyticum]
sp|Q9PQ68|HRCA_UREPA Heat-inducible transcription repressor hrcA
pir||F82892 heat-inducible transcription repressor UU421 [imported] -
Ureaplasma urealyticum
gb|AAF30832.1|AE002139_5 (AE002139) heat-inducible transcription repressor [Ureaplasma
urealyticum]
Length = 357
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++++ +L + V Y P+SSK L + S ATIRN L K G++ + H SG
Sbjct: 18 DRQKKVLKSIVDEYTISATPVSSKLLVQKEFKDQSSATIRNEMMFLEKNGLIEKQHISGG 77
Query: 82 RLPTFKAFENY 92
R+P+ K ++ Y
Sbjct: 78 RVPSLKGYDFY 88
>sp|O06940|HRCA_STRMU Heat-inducible transcription repressor hrcA
Length = 344
Score = 47.0 bits (110), Expect = 2e-04
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+++ +L+ V+ + + EPI SK L+ + S ATIRN L K G+L +AH+S R
Sbjct: 5 RQKDILNLIVELFTKTHEPIGSKTLQN--SIASSRATIRNDMAALEKLGLLEKAHTSSGR 62
Query: 83 LPTFKAFENYWQKSLRFETL 102
LP+ + + + + SL ++L
Sbjct: 63 LPSQEGYRYFVEHSLNPDSL 82
>ref|NP_372106.1| (NC_002758) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus Mu50]
ref|NP_374695.1| (NC_002745) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus N315]
sp|P45556|HRCA_STAAM Heat-inducible transcription repressor hrcA
dbj|BAA06357.1| (D30690) ORF37 [Staphylococcus aureus]
dbj|BAB42674.1| (AP003134) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB57744.1| (AP003362) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus Mu50]
Length = 325
Score = 46.6 bits (109), Expect = 3e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
+++ S+L+A V+ Y+ +P+ SK L E +L +S ATIRN + L + + HSS
Sbjct: 4 DRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSG 63
Query: 82 RLPTFKAFENYWQKSL 97
R P+ F Y + L
Sbjct: 64 RSPSQLGFRYYVNRLL 79
>ref|NP_646351.1| (NC_003923) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus MW2]
dbj|BAB95399.1| (AP004827) Heat-inducible transcriptional repressor
[Staphylococcus aureus subsp. aureus MW2]
Length = 325
Score = 46.6 bits (109), Expect = 3e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
+++ S+L+A V+ Y+ +P+ SK L E +L +S ATIRN + L + + HSS
Sbjct: 4 DRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSG 63
Query: 82 RLPTFKAFENYWQKSL 97
R P+ F Y + L
Sbjct: 64 RSPSQLGFRYYVNRLL 79
>sp|O51867|HRCA_LEPIN Heat-inducible transcription repressor hrcA
gb|AAC35414.1| (AF007813) heat shock operon regulator HrcA [Leptospira
interrogans]
Length = 342
Score = 46.2 bits (108), Expect = 4e-04
Identities = 26/86 (30%), Positives = 44/86 (50%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ + +L A V ++Q P+ SK L + D+ +S A+IR + L G L H+SG R
Sbjct: 6 RHKRILKALVDKFIQENRPVGSKTLFDKHDIGLSPASIRTVLKDLEDFGYLASKHTSGGR 65
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKR 108
+PT + + Y + L + EK+
Sbjct: 66 IPTERGYRFYVDSLVILYELTLKEKQ 91
>ref|NP_267108.1| (NC_002662) heat-inducible transcription repressor HrcA
[Lactococcus lactis subsp. lactis]
sp|Q9CGZ0|HRCA_LACLA Heat-inducible transcription repressor hrcA
gb|AAK05050.1|AE006329_9 (AE006329) heat-inducible transcription repressor HrcA [Lactococcus
lactis subsp. lactis]
Length = 347
Score = 46.2 bits (108), Expect = 4e-04
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L+ V Y + PI SK L L ++ S ATIRN ++L K G++ + H+S R
Sbjct: 5 RQRQILNLIVSLYAKEHTPIGSKSL--LDSIQASSATIRNDMKVLEKLGLIQKEHTSSGR 62
Query: 83 LPTFKAFENYWQKSLRFETLKVNE--KRLKSASENFGLFTLLKKPSLERL 130
+P+ ++ + + ++ + N+ K +K+ +F + L K + + L
Sbjct: 63 VPSVSGYKYFVENVIQLDEFSQNDLFKVMKAFDGDFYRLSDLFKTAAKSL 112
>ref|NP_470848.1| (NC_003212) transcription repressor of class I heat-shock gene HrcA
[Listeria innocua]
sp|Q92BN6|HRCA_LISIN Heat-inducible transcription repressor hrcA
emb|CAC96743.1| (AL596168) transcription repressor of class I heat-shock gene HrcA
[Listeria innocua]
Length = 345
Score = 45.8 bits (107), Expect = 5e-04
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 30 AFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAF 89
A + + ++P+ SK L + L S ATIRN +L + G + + HSS R+P+ K +
Sbjct: 12 AIIDHFTWTIQPVGSKNLLKEKSLPYSSATIRNEMGVLEEYGFIEKTHSSSGRVPSEKGY 71
Query: 90 ENYWQKSLRFETLKVNEKRLKSA--SENF 116
Y L+ + L +++++ + SEN+
Sbjct: 72 RFYVDYLLQPKKLDKSDRQMIRSFFSENY 100
>sp|O87775|HRCA_LACSK Heat-inducible transcription repressor hrcA
emb|CAA06939.1| (AJ006274) HrcA protein [Lactobacillus sakei]
Length = 352
Score = 45.8 bits (107), Expect = 5e-04
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L ++ + + +P+ SK+L + +S ATIRN L G++ + HSS R+P+
Sbjct: 9 ILKEIIRLFTESGQPVGSKKLMSELPMHVSSATIRNDMADLENVGLIEKTHSSSGRVPSM 68
Query: 87 KAFENYWQKSLRFETLKVNEKRLKSASENFG 117
K + Y ++ L N + + ++FG
Sbjct: 69 KGYRYYLDHLIQPAVL--NPMDVATVQQSFG 97
>ref|NP_465000.1| (NC_003210) transcription repressor of class I heat-shock gene HrcA
[Listeria monocytogenes EGD-e]
sp|Q9S5A6|HRCA_LISMO Heat-inducible transcription repressor hrcA
pir||T43736 transcription repressor protein of class I heat shock genes hrcA
[imported] - Listeria monocytogenes
dbj|BAA82787.1| (AB023064) HrcA [Listeria monocytogenes]
emb|CAC99553.1| (AL591979) transcription repressor of class I heat-shock gene HrcA
[Listeria monocytogenes]
Length = 345
Score = 45.4 bits (106), Expect = 7e-04
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 30 AFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAF 89
A + + ++P+ SK L + L S ATIRN +L + G + + HSS R+P+ K +
Sbjct: 12 AIIDHFTWTIQPVGSKNLLKEKGLPYSSATIRNEMGVLEEYGFIEKTHSSSGRVPSEKGY 71
Query: 90 ENYWQKSLRFETLKVNEKRLKSA--SENF 116
Y L+ + L +++++ + SEN+
Sbjct: 72 RFYVDYLLQPKKLDKSDRQMIRSFFSENY 100
>ref|NP_390427.1| (NC_000964) transcriptional regulator [Bacillus subtilis]
sp|P25499|HRCA_BACSU Heat-inducible transcription repressor hrcA
pir||A41874 transcription repressor of class I heat-shock gene hrcA -
Bacillus subtilis
gb|AAA22526.1| (M84964) ORF39 [Bacillus subtilis]
dbj|BAA12462.1| (D84432) YqeS [Bacillus subtilis]
emb|CAB14491.1| (Z99117) transcriptional regulator [Bacillus subtilis]
Length = 343
Score = 45.4 bits (106), Expect = 7e-04
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
N++ +L + +++ +P+ S+ L + ++ S ATIRN L + G + + HSS
Sbjct: 4 NRQLLILQVIINDFIKSAQPVGSRTLSKKDEITFSSATIRNEMADLEELGFIEKTHSSSG 63
Query: 82 RLPTFKAFENY 92
R+P+ K + Y
Sbjct: 64 RVPSEKGYRYY 74
>sp|P42370|HRCA_LACLC Heat-inducible transcription repressor hrcA
pir||S40082 hypothetical protein 1 - Lactococcus lactis
emb|CAA54087.1| (X76642) orf1 [Lactococcus lactis]
Length = 347
Score = 45.4 bits (106), Expect = 7e-04
Identities = 29/113 (25%), Positives = 58/113 (50%), Gaps = 4/113 (3%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L+ V Y + PI SK L L ++ S ATIRN + L + G++ + H+S R
Sbjct: 5 RQRQILNLIVSLYAKDHTPIGSKSL--LDSIQASSATIRNDMKALERLGLIQKEHTSSGR 62
Query: 83 LPTFKAFENYWQKSLRFETLKVNE--KRLKSASENFGLFTLLKKPSLERLERV 133
+P+ ++ + + ++ E N+ K +K+ +F + L K + + L +
Sbjct: 63 IPSVSGYKYFVENVIQLEEFSQNDLFKVMKAFDGDFYRLSDLFKTAAKSLSEL 115
>ref|NP_641853.1| (NC_003919) heat-inducible transcriptional repressor [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM36389.1| (AE011784) heat-inducible transcriptional repressor [Xanthomonas
axonopodis pv. citri str. 306]
Length = 343
Score = 45.4 bits (106), Expect = 7e-04
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ LL + Y++ EP+ SK L + A L +S ATIRN L G+L H+S R
Sbjct: 5 RARQLLRTLIARYIRDGEPVGSKTLAQHAGLDVSPATIRNILADLEDVGLLSSPHTSAGR 64
Query: 83 LPT 85
+PT
Sbjct: 65 VPT 67
>ref|NP_384483.1| (NC_003047) PROBABLE HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR
PROTEIN [Sinorhizobium meliloti]
emb|CAC41814.1| (AL591783) PROBABLE HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR
PROTEIN [Sinorhizobium meliloti]
Length = 359
Score = 45.1 bits (105), Expect = 9e-04
Identities = 21/54 (38%), Positives = 32/54 (58%)
Query: 32 VKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPT 85
V++YL+ EP+ S+ L L + +S A++RN L G++Y H S RLPT
Sbjct: 27 VESYLESGEPLGSRNLSRLLPVSLSPASVRNVMSDLEDLGLIYSPHVSAGRLPT 80
>sp|Q9REF2|HRCA_BRAJA Heat-inducible transcription repressor hrcA
emb|CAB60664.1| (Y09633) HrcA protein [Bradyrhizobium japonicum]
Length = 362
Score = 45.1 bits (105), Expect = 9e-04
Identities = 20/63 (31%), Positives = 35/63 (54%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ + V++YL EP+ S+ + L + +S A++RN L + G++Y H+S R
Sbjct: 22 RSRDIFRQIVESYLATGEPVGSRNISRLIAMPLSPASVRNVMADLEQLGLIYAPHTSAGR 81
Query: 83 LPT 85
LPT
Sbjct: 82 LPT 84
>ref|NP_636844.1| (NC_003902) heat-inducible transcriptional repressor [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM40768.1| (AE012247) heat-inducible transcriptional repressor [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 369
Score = 45.1 bits (105), Expect = 9e-04
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
LL + Y++ EP+ SK L + A L +S ATIRN L G+L H+S R+PT
Sbjct: 35 LLRTLIARYIRDGEPVGSKTLAQHAGLDVSPATIRNILADLEDIGLLSSPHTSAGRVPTA 94
Query: 87 KAFENYWQKSLRFE---TLKVNEKRLKSASEN 115
+ + ++ + +V R + AS N
Sbjct: 95 HGYRVFVDSLVQMQPPGEEEVRRLRAELASSN 126
>gb|AAG53934.2|AF302775_1 (AF302775) HrcA [Xanthomonas campestris pv. campestris]
Length = 350
Score = 45.1 bits (105), Expect = 9e-04
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
LL + Y++ EP+ SK L + A L +S ATIRN L G+L H+S R+PT
Sbjct: 16 LLRTLIARYIRDGEPVGSKTLAQHAGLDVSPATIRNILADLEDIGLLSSPHTSAGRVPTA 75
Query: 87 KAFENYWQKSLRFE---TLKVNEKRLKSASEN 115
+ + ++ + +V R + AS N
Sbjct: 76 HGYRVFVDSLVQMQPPGEEEVRRLRAELASSN 107
>ref|NP_540693.1| (NC_003317) HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA [Brucella
melitensis]
gb|AAL52957.1| (AE009611) HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA [Brucella
melitensis]
Length = 374
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ + V+TYL +P+ S+ L L +S ATIRN L G++Y H S R
Sbjct: 34 RSRDIFRLIVETYLNDGDPVGSRNLSRLLPHTLSPATIRNVMSDLEHLGLIYAPHISAGR 93
Query: 83 LPT 85
LPT
Sbjct: 94 LPT 96
>ref|NP_353360.1| (NC_003062) AGR_C_572p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531034.1| (NC_003304) heat-inducible transcription repressor [Agrobacterium
tumefaciens str. C58 (U. Washington)]
sp|O68443|HRCA_AGRT5 Heat-inducible transcription repressor hrcA
gb|AAC18052.1| (AF039940) groE operon repressor HrcA [Agrobacterium tumefaciens]
gb|AAK86145.1| (AE007971) AGR_C_572p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41350.1| (AE009004) heat-inducible transcription repressor [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 363
Score = 44.7 bits (104), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ + V+ YL EP+ S+ L L + +S A++RN L + G++Y H S R
Sbjct: 18 RSREIFRRIVEGYLDTGEPLGSRSLSRLLPMSLSPASVRNVMSDLEELGLIYSPHISAGR 77
Query: 83 LPT 85
LPT
Sbjct: 78 LPT 80
>ref|NP_105447.1| (NC_002678) repressor protein of class I heat shock genes
[Mesorhizobium loti]
dbj|BAB51233.1| (AP003004) repressor protein of class I heat shock genes
[Mesorhizobium loti]
Length = 360
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
+ + V +YL+ EP+ S+ L + +S ATIRN L G++Y H S R
Sbjct: 20 RSRDIFRRIVDSYLRDGEPVGSRSLSRILPSSLSPATIRNVMSDLEHLGLIYAPHISAGR 79
Query: 83 LPTFKAFENYWQKSLRFETLKVNEKR 108
LPT + + L E+R
Sbjct: 80 LPTQAGLRFFVDAFMELGDLSDEERR 105
>gb|AAM43820.1|AF281816_1 (AF281816) HrcA [Acholeplasma laidlawii]
Length = 342
Score = 43.5 bits (101), Expect = 0.003
Identities = 22/71 (30%), Positives = 39/71 (53%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
++++ +L A + Y + EP+ SK L L L S AT+R +L + G L + H+S
Sbjct: 4 SRQKLILKAIIDMYSEKGEPVGSKALMALPYLNYSSATLRYDMAVLEELGFLEKMHTSSG 63
Query: 82 RLPTFKAFENY 92
R+P+ + + Y
Sbjct: 64 RVPSERGYRYY 74
>ref|NP_109812.1| (NC_000912) protein (hrcA) homolog; similar to Swiss-Prot
Accession Number P25499, from B. subtilis [Mycoplasma
pneumoniae]
sp|P75351|HRCA_MYCPN Heat-inducible transcription repressor hrcA
pir||S73356 hypothetical protein yqxE - Mycoplasma pneumoniae (strain ATCC
29342)
gb|AAB95678.1| (AE000004) protein (hrcA) homolog; similar to Swiss-Prot
Accession Number P25499, from B. subtilis [Mycoplasma
pneumoniae]
Length = 351
Score = 42.4 bits (98), Expect = 0.006
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 23 KKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGAR 82
++ +L A + Y+ P+ SK L + +S T+RN +L KEG L + H S R
Sbjct: 7 RQAQILKAIINEYIAYPVPVGSKLLTKKYFKNLSGGTLRNEMAVLEKEGYLKKNHISSGR 66
Query: 83 LPTFKAFENY 92
+P+ ++ Y
Sbjct: 67 IPSQLGYQYY 76
>ref|NP_520770.1| (NC_003295) PROBABLE HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR
TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
solanacearum]
emb|CAD16356.1| (AL646071) PROBABLE HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR
TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
solanacearum]
Length = 352
Score = 42.4 bits (98), Expect = 0.006
Identities = 20/63 (31%), Positives = 35/63 (54%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
LL ++ Y+ +P+ S+ L + + L +S ATIRN L + G + H+S R+PT
Sbjct: 8 LLKTLIERYIAEGQPVGSRTLSKYSGLDLSPATIRNVMSDLEEMGFIASPHTSAGRVPTP 67
Query: 87 KAF 89
+ +
Sbjct: 68 RGY 70
>sp|Q45550|HRCA_BACST Heat-inducible transcription repressor hrcA
emb|CAA70594.1| (Y09446) repressor protein of class I heat shock genes [Geobacillus
stearothermophilus]
Length = 344
Score = 42.0 bits (97), Expect = 0.007
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L + +++ +P+ S+ L + ++ +S ATIRN L + G + + H S R+P+
Sbjct: 9 ILQVIIDDFIRSGQPVGSRTLSKKHEIALSSATIRNEMADLEELGYIEKTHVSSGRVPSE 68
Query: 87 KAFENYWQKSLRFETL-KVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDF 145
K + Y L + L K + +++KS + + LE+V++ + L
Sbjct: 69 KGYRYYVDHLLSPQRLTKDDIQKIKS----------IFAERIYELEKVVQKSAQILSDLT 118
Query: 146 LAFSCALGYSVKMEK 160
S ALG +VK K
Sbjct: 119 NYTSIALGPAVKENK 133
>sp|O69266|HRCA_BACSH Heat-inducible transcription repressor hrcA
emb|CAA76661.1| (Y17157) heat shock protein [Bacillus sphaericus]
Length = 343
Score = 42.0 bits (97), Expect = 0.007
Identities = 19/71 (26%), Positives = 38/71 (52%)
Query: 22 NKKESLLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGA 81
N++ +L + ++ +P+ S+++ + + S ATIRN L + G L + H+S
Sbjct: 4 NRQLQILQVIIDDFILSAQPVGSRQISKKQGITFSPATIRNEMADLEELGYLEKTHTSSG 63
Query: 82 RLPTFKAFENY 92
R+P+ K + Y
Sbjct: 64 RVPSEKGYRFY 74
>dbj|BAB20746.1| (AB039833) HrcA [Geobacillus thermoglucosidasius]
Length = 344
Score = 42.0 bits (97), Expect = 0.007
Identities = 18/66 (27%), Positives = 37/66 (55%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L + +++ +P+ S+ L + ++ +S ATIRN L + G + + H+S R+P+
Sbjct: 9 ILQVIIDDFIRSGQPVGSRALSKKHEISLSSATIRNEMADLEELGYIEKTHASSGRVPSE 68
Query: 87 KAFENY 92
K + Y
Sbjct: 69 KGYRYY 74
>ref|NP_658348.1| (NC_003995) HrcA, HrcA protein C terminal domain [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 338
Score = 41.6 bits (96), Expect = 0.010
Identities = 22/80 (27%), Positives = 40/80 (49%)
Query: 27 LLDAFVKTYLQILEPISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTF 86
+L + ++ +P+ S+ L + ++ S ATIRN L + G + + HSS R+P+
Sbjct: 9 ILQTIIDDFIGSAQPVGSRTLAKKDEITYSSATIRNEMADLEELGFIEKTHSSSGRVPSE 68
Query: 87 KAFENYWQKSLRFETLKVNE 106
K + Y L + L +E
Sbjct: 69 KGYRFYVDHLLAPQNLPNDE 88
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.139 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,861,185
Number of Sequences: 1026957
Number of extensions: 5732272
Number of successful extensions: 17209
Number of sequences better than 1.0e-02: 60
Number of HSP's better than 0.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17154
Number of HSP's gapped (non-prelim): 60
length of query: 276
length of database: 324,149,939
effective HSP length: 119
effective length of query: 157
effective length of database: 201,942,056
effective search space: 31704902792
effective search space used: 31704902792
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 96 (41.6 bits)