BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645720|ref|NP_207897.1| hypothetical protein
[Helicobacter pylori 26695]
(435 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207897.1| (NC_000915) hypothetical protein [Helicoba... 944 0.0
ref|NP_223750.1| (NC_000921) putative [Helicobacter pylori ... 906 0.0
ref|NP_207358.1| (NC_000915) hypothetical protein [Helicoba... 224 1e-57
ref|NP_223228.1| (NC_000921) putative [Helicobacter pylori ... 219 4e-56
>ref|NP_207897.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64658 hypothetical protein HP1106 - Helicobacter pylori (strain 26695)
gb|AAD08159.1| (AE000617) H. pylori predicted coding region HP1106 [Helicobacter
pylori 26695]
Length = 435
Score = 944 bits (2440), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MIFLKKSLYALLFSGFLTPPLMKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLM 60
MIFLKKSLYALLFSGFLTPPLMKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLM
Sbjct: 1 MIFLKKSLYALLFSGFLTPPLMKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLM 60
Query: 61 PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI 120
PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI
Sbjct: 61 PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI 120
Query: 121 GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN 180
GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN
Sbjct: 121 GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN 180
Query: 181 YDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWP 240
YDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWP
Sbjct: 181 YDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWP 240
Query: 241 NGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT 300
NGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT
Sbjct: 241 NGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT 300
Query: 301 HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL 360
HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL
Sbjct: 301 HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL 360
Query: 361 PWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTI 420
PWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTI
Sbjct: 361 PWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTI 420
Query: 421 DTRELIDFVKSKTSK 435
DTRELIDFVKSKTSK
Sbjct: 421 DTRELIDFVKSKTSK 435
>ref|NP_223750.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71857 hypothetical protein jhp1033 - Helicobacter pylori (strain J99)
gb|AAD06612.1| (AE001531) putative [Helicobacter pylori J99]
Length = 435
Score = 906 bits (2341), Expect = 0.0
Identities = 414/435 (95%), Positives = 422/435 (96%)
Query: 1 MIFLKKSLYALLFSGFLTPPLMKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLM 60
MIFLKKSL ALL SGF PPLMKAASFVYDLKFMSFNFNL +P NNPYWNSLTKMQGRLM
Sbjct: 1 MIFLKKSLCALLISGFFIPPLMKAASFVYDLKFMSFNFNLASPPNNPYWNSLTKMQGRLM 60
Query: 61 PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI 120
PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI
Sbjct: 61 PQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQI 120
Query: 121 GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN 180
GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN
Sbjct: 121 GHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN 180
Query: 181 YDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWP 240
YDFDQFLYFVSSEFQFLKGYLGLGGQLV+FHNA+ HSMGDNYPYGGNSYLKPGD TPQWP
Sbjct: 181 YDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNANSHSMGDNYPYGGNSYLKPGDATPQWP 240
Query: 241 NGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT 300
NGYPYFSQK+NPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT
Sbjct: 241 NGYPYFSQKDNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQT 300
Query: 301 HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL 360
HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL
Sbjct: 301 HYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGL 360
Query: 361 PWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTI 420
PWYRAPNFDMIGLYY+YKNKW+SVRADAFF+F+GGGDGYHLYGKGGKW YQQFLTLTI
Sbjct: 361 PWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMYQQFLTLTI 420
Query: 421 DTRELIDFVKSKTSK 435
DTRELIDFVKSK K
Sbjct: 421 DTRELIDFVKSKIPK 435
>ref|NP_207358.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64590 hypothetical protein HP0563 - Helicobacter pylori (strain 26695)
gb|AAD07632.1| (AE000570) H. pylori predicted coding region HP0563 [Helicobacter
pylori 26695]
Length = 416
Score = 224 bits (572), Expect = 1e-57
Identities = 139/436 (31%), Positives = 211/436 (47%), Gaps = 59/436 (13%)
Query: 21 LMKAASFVYDLKFMSFN--FNLVA---PANNPYW-NSLTKMQGRLMPQIGVQLDKR---Q 71
L+ S+ +D +N FN+ + PYW N+ T ++ RL P G+Q R Q
Sbjct: 15 LLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTRGVEQ 74
Query: 72 ALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKL 131
+L GA+F QN H + + FPY WG TMYY+ GK F+ GI PR +G Y L+ F
Sbjct: 75 SLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPY 134
Query: 132 FWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN---YDFDQFLY 188
+WFIDP RG QF+ Y P++ + G E ++DW+GG +N +N D+F
Sbjct: 135 YWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQM 194
Query: 189 FVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWPNGYPYFSQ 248
S + F K LG+GG V+FHN D Y G ++ F++
Sbjct: 195 NGSVAYNFFKDLLGIGGYFVLFHNE------DKYLLNGADGMQ--------------FNE 234
Query: 249 KNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYAS 308
K I +LDR+YY+AY+ ++ P+M+ + FG S + R +
Sbjct: 235 KKAIDNSAI------YLLDRLYYNAYISTSLLDIAPFMEKLSAKFGMVSEAS----RLRN 284
Query: 309 ECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATY------------GQSL 356
K F NS GG+F + QYKGFGI N ++F+ P+M FY Y +
Sbjct: 285 REKEVPFINSVGGQFDVEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPI 344
Query: 357 YTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFL 416
Y G+P+++A ++ YY +KN + SVR + N + GG + + W +YQ ++
Sbjct: 345 YRGVPFFQANMYNRFDFYYNWKNDFASVRINFVLNAMRGG-----FDRSLPWSESYQVYM 399
Query: 417 TLTIDTRELIDFVKSK 432
T+ D LI+ + K
Sbjct: 400 TVAFDPYNLINKIARK 415
>ref|NP_223228.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71923 hypothetical protein jhp0510 - Helicobacter pylori (strain J99)
gb|AAD06086.1| (AE001484) putative [Helicobacter pylori J99]
Length = 416
Score = 219 bits (559), Expect = 4e-56
Identities = 137/436 (31%), Positives = 211/436 (47%), Gaps = 59/436 (13%)
Query: 21 LMKAASFVYDLKFMSFN--FNLVA---PANNPYW-NSLTKMQGRLMPQIGVQLDKR---Q 71
L+ S+ +D +N FN+ + PYW N+ T ++ RL P G+Q R Q
Sbjct: 15 LLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTRGVEQ 74
Query: 72 ALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKL 131
+L GA+F QN H + + FPY WG TMYY+ GK F+ GI PR +G Y L+ F
Sbjct: 75 SLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPY 134
Query: 132 FWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKN---YDFDQFLY 188
+WFIDP R QF+ Y P++ + G E ++DW+GG +N +N D+F
Sbjct: 135 YWFIDPNARWVLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQM 194
Query: 189 FVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDVTPQWPNGYPYFSQ 248
S + F K LG+GG V+FHN D Y G ++ F++
Sbjct: 195 NGSVAYNFFKDLLGIGGYFVLFHNE------DKYLLNGADGMQ--------------FNE 234
Query: 249 KNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYAS 308
K +N +LDR+Y++AY+ ++ P+M+ + +FG S + R
Sbjct: 235 KKAIDS------NNIYLLDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESS----RLRQ 284
Query: 309 ECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATY------------GQSL 356
KN F NS GG+ + QYKGFGI N ++F+ P+M FY Y +
Sbjct: 285 IHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPI 344
Query: 357 YTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFL 416
Y G+P+++A ++ YY +KN + SVR + N + GG + + W +YQ ++
Sbjct: 345 YRGVPFFQANMYNRFDFYYNWKNDFASVRINFLLNAMRGG-----FDRSLPWSESYQVYM 399
Query: 417 TLTIDTRELIDFVKSK 432
T+ D LI+ + K
Sbjct: 400 TVAFDPYNLINKIARK 415
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.143 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,471,159
Number of Sequences: 1026957
Number of extensions: 16267316
Number of successful extensions: 36660
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36642
Number of HSP's gapped (non-prelim): 4
length of query: 435
length of database: 324,149,939
effective HSP length: 124
effective length of query: 311
effective length of database: 196,807,271
effective search space: 61207061281
effective search space used: 61207061281
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 99 (42.7 bits)