BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644742|ref|NP_206912.1| hypothetical protein
[Helicobacter pylori 26695]
(231 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206912.1| (NC_000915) hypothetical protein [Helicoba... 467 e-131
ref|NP_222825.1| (NC_000921) putative [Helicobacter pylori ... 427 e-119
ref|NP_214140.1| (NC_000918) fuculose-1-phosphate aldolase ... 58 9e-08
ref|NP_577837.1| (NC_003413) fuculose-1-phosphate aldolase;... 45 6e-04
>ref|NP_206912.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64533 hypothetical protein HP0112 - Helicobacter pylori (strain 26695)
gb|AAD07186.1| (AE000533) H. pylori predicted coding region HP0112 [Helicobacter
pylori 26695]
Length = 231
Score = 467 bits (1202), Expect = e-131
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MTQALYYFIIYLLLKKLVIMINMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISA 60
MTQALYYFIIYLLLKKLVIMINMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISA
Sbjct: 1 MTQALYYFIIYLLLKKLVIMINMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISA 60
Query: 61 RIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAY 120
RIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAY
Sbjct: 61 RIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAY 120
Query: 121 ARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKY 180
ARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKY
Sbjct: 121 ARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKY 180
Query: 181 FVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV 231
FVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
Sbjct: 181 FVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV 231
>ref|NP_222825.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71974 hypothetical protein jhp0104 - Helicobacter pylori (strain J99)
gb|AAD05683.1| (AE001449) putative [Helicobacter pylori J99]
Length = 212
Score = 427 bits (1099), Expect = e-119
Identities = 209/212 (98%), Positives = 211/212 (98%)
Query: 20 MINMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQL 79
M+NMNTHTRGIDS LIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQL
Sbjct: 1 MLNMNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQL 60
Query: 80 NENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPR 139
NENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPR
Sbjct: 61 NENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPR 120
Query: 140 DYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKL 199
DYLGYRSLGEEI+IFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKL
Sbjct: 121 DYLGYRSLGEEIAIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKL 180
Query: 200 MEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV 231
MEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
Sbjct: 181 MEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV 212
>ref|NP_214140.1| (NC_000918) fuculose-1-phosphate aldolase [Aquifex aeolicus]
pir||E70443 L-fuculose-phosphate aldolase homolog - Aquifex aeolicus
gb|AAC07526.1| (AE000749) fuculose-1-phosphate aldolase [Aquifex aeolicus]
Length = 187
Score = 57.8 bits (138), Expect = 9e-08
Identities = 48/161 (29%), Positives = 84/161 (51%), Gaps = 7/161 (4%)
Query: 54 YQGSISARIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKE-ASLDSPIHASVYREF 112
Y G++S RI + + I + A F L+E +L L + + +E AS + +H V RE
Sbjct: 24 YTGNMS-RIFSGKLYITRTGANFRNLSEGDILELPLEGESILEERASSELIVHRRVLRE- 81
Query: 113 LDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILR 172
+ K + + P Y++ SL+ + P D G LG+ +++ ++ + +E A +
Sbjct: 82 TEHKALLHTHPVYAVMCSLKTKEITPLDSEGKAILGK-VNVLELENSSASEELAQN-LAE 139
Query: 173 QLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVL 213
+L+E K IKG G+FA L + E+ ++ENSCK+L
Sbjct: 140 ELKE--KSIAVIKGHGVFAGAENLIRAYEITSVLENSCKIL 178
>ref|NP_577837.1| (NC_003413) fuculose-1-phosphate aldolase; (fucA) [Pyrococcus
furiosus DSM 3638]
gb|AAL80232.1| (AE010137) fuculose-1-phosphate aldolase; (fucA) [Pyrococcus
furiosus DSM 3638]
Length = 189
Score = 45.1 bits (105), Expect = 6e-04
Identities = 32/107 (29%), Positives = 54/107 (49%), Gaps = 10/107 (9%)
Query: 28 RGIDSNLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQLNENTLLVL 87
R I + LIH S RKG G + G++S R+G N I +V ++L E+ + V+
Sbjct: 2 RNIKAKLIH----YSKLAHRKGLTGSFGGNMSIRVG-NYVFIKGTGSVMEELTESQIAVV 56
Query: 88 HDKIDYRWKEA---SLDSPIHASVYREFLDAKFIAYARPPYSLAYSL 131
K+D + + S + +H VYR + + + + PPYS+ S+
Sbjct: 57 --KLDGKVVSSVRPSSEYRLHLGVYRNRPEVRAVVHLHPPYSIVLSI 101
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,557,175
Number of Sequences: 1026957
Number of extensions: 5383171
Number of successful extensions: 15558
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15554
Number of HSP's gapped (non-prelim): 4
length of query: 231
length of database: 324,149,939
effective HSP length: 117
effective length of query: 114
effective length of database: 203,995,970
effective search space: 23255540580
effective search space used: 23255540580
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 95 (41.2 bits)