BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645734|ref|NP_207911.1| hypothetical protein
[Helicobacter pylori 26695]
         (144 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207911.1|  (NC_000915) hypothetical protein [Helicoba...   284  1e-76
ref|NP_223765.1|  (NC_000921) putative [Helicobacter pylori ...   269  4e-72
ref|NP_282605.1|  (NC_002163) hypothetical protein Cj1465 [C...    64  4e-10

>ref|NP_207911.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64659 hypothetical protein HP1120 - Helicobacter pylori (strain 26695)
 gb|AAD08166.1| (AE000618) H. pylori predicted coding region HP1120 [Helicobacter
           pylori 26695]
          Length = 144

 Score =  284 bits (726), Expect = 1e-76
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MVVLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
           MVVLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV
Sbjct: 1   MVVLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60

Query: 61  QMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQ 120
           QMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQ
Sbjct: 61  QMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQ 120

Query: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144
           IIPHDTCDYKGSRHVGSHFLRVQA
Sbjct: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144



>ref|NP_223765.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71853 hypothetical protein jhp1048 - Helicobacter pylori (strain J99)
 gb|AAD06641.1| (AE001533) putative [Helicobacter pylori J99]
          Length = 144

 Score =  269 bits (687), Expect = 4e-72
 Identities = 136/144 (94%), Positives = 138/144 (95%)

Query: 1   MVVLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
           MVVLHSHLENAL QLKELIDLTERDIRDIKLAKH EIFERNHQKQLAIQAFE+EK NID 
Sbjct: 1   MVVLHSHLENALNQLKELIDLTERDIRDIKLAKHAEIFERNHQKQLAIQAFEQEKTNIDA 60

Query: 61  QMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQ 120
           QMLSLKNQFP+KEMSELLDEKTSDFLNQMRE L VLKEKNLIYSRMAFAVSEFYSSLIQQ
Sbjct: 61  QMLSLKNQFPNKEMSELLDEKTSDFLNQMREFLLVLKEKNLIYSRMAFAVSEFYSSLIQQ 120

Query: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144
           IIPHDTCDYKGSRHVGSHFLRVQA
Sbjct: 121 IIPHDTCDYKGSRHVGSHFLRVQA 144



>ref|NP_282605.1| (NC_002163) hypothetical protein Cj1465 [Campylobacter jejuni]
 pir||H81292 hypothetical protein Cj1465 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73888.1| (AL139078) hypothetical protein Cj1465 [Campylobacter jejuni]
          Length = 144

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 38/119 (31%), Positives = 62/119 (51%), Gaps = 1/119 (0%)

Query: 3   VLHSHLENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQM 62
           +L   L+     L +LI LTE DI +IK+AKH  +     +K   I  F   K  +DV +
Sbjct: 1   MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNKLIAEFITAKKQLDVAL 60

Query: 63  LSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQI 121
           + L N    K +SELLD++    L+ ++++L  L  KN  Y++    V +F   L+ ++
Sbjct: 61  VELNNS-STKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAKFVLIVKDFLDGLVNKM 118



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,903,521
Number of Sequences: 1026957
Number of extensions: 2584009
Number of successful extensions: 11250
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11246
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 324,149,939
effective HSP length: 120
effective length of query: 24
effective length of database: 200,915,099
effective search space: 4821962376
effective search space used: 4821962376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 89 (38.9 bits)