BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645736|ref|NP_207913.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207913.1| (NC_000915) hypothetical protein [Helicoba... 149 5e-36
emb|CAD18864.1| (AJ421716) FlgM protein [Helicobacter pylori] 148 1e-35
emb|CAD18867.1| (AJ421712) FlgM protein [Helicobacter pylori] 147 3e-35
emb|CAD18862.1| (AJ421714) FlgM protein [Helicobacter pylori] 146 4e-35
emb|CAD18861.1| (AJ421713) FlgM protein [Helicobacter pylori] 145 7e-35
emb|CAD18863.1| (AJ421715) FlgM protein [Helicobacter pylori] 145 1e-34
emb|CAD18860.1| (AJ421711) FlgM protein [Helicobacter pylori] 144 2e-34
emb|CAD18865.1| (AJ421717) FlgM protein [Helicobacter pylori] 138 2e-32
emb|CAD18869.1| (AJ421720) FlgM protein [Helicobacter pylori] 127 4e-29
emb|CAD18868.1| (AJ421719) FlgM protein [Helicobacter pylori] 126 6e-29
ref|NP_223768.1| (NC_000921) putative [Helicobacter pylori ... 126 6e-29
emb|CAD18866.1| (AJ421718) FlgM protein [Helicobacter pylori] 124 3e-28
>ref|NP_207913.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64660 hypothetical protein HP1122 - Helicobacter pylori (strain 26695)
gb|AAD08180.1| (AE000619) H. pylori predicted coding region HP1122 [Helicobacter
pylori 26695]
Length = 76
Score = 149 bits (377), Expect = 5e-36
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMAKDLLGIS
Sbjct: 61 LHETSHKMAKDLLGIS 76
>emb|CAD18864.1| (AJ421716) FlgM protein [Helicobacter pylori]
Length = 76
Score = 148 bits (373), Expect = 1e-35
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18867.1| (AJ421712) FlgM protein [Helicobacter pylori]
Length = 76
Score = 147 bits (370), Expect = 3e-35
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINAVSSLAPVQS+GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAVSSLAPVQSVGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18862.1| (AJ421714) FlgM protein [Helicobacter pylori]
Length = 76
Score = 146 bits (369), Expect = 4e-35
Identities = 74/76 (97%), Positives = 76/76 (99%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIK+AIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKQAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18861.1| (AJ421713) FlgM protein [Helicobacter pylori]
Length = 76
Score = 145 bits (367), Expect = 7e-35
Identities = 73/76 (96%), Positives = 76/76 (99%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVEN+EAALDRVAEIKKA+ENNQYKIN
Sbjct: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENSEAALDRVAEIKKAVENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18863.1| (AJ421715) FlgM protein [Helicobacter pylori]
Length = 76
Score = 145 bits (365), Expect = 1e-34
Identities = 72/76 (94%), Positives = 75/76 (97%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINA+SSLAPVQS+GNYKRVEKNEKVENNE ALDRVAEIKKAIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAISSLAPVQSVGNYKRVEKNEKVENNEVALDRVAEIKKAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18860.1| (AJ421711) FlgM protein [Helicobacter pylori]
Length = 76
Score = 144 bits (364), Expect = 2e-34
Identities = 72/76 (94%), Positives = 76/76 (99%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINA+SSL+PVQSLGNYKRVEKNEKVEN+EAALDRVAEIKKAIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAISSLSPVQSLGNYKRVEKNEKVENSEAALDRVAEIKKAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGIS 76
LHETSHKMA+DLLGIS
Sbjct: 61 LHETSHKMAQDLLGIS 76
>emb|CAD18865.1| (AJ421717) FlgM protein [Helicobacter pylori]
Length = 76
Score = 138 bits (347), Expect = 2e-32
Identities = 69/75 (92%), Positives = 73/75 (97%)
Query: 1 MNIKLKDFTMINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
MNIKLKDFTMINA+SSLAPVQSLGNYKRVEKNEKVEN+E ALDRVAEIK+AIENNQYKIN
Sbjct: 1 MNIKLKDFTMINAISSLAPVQSLGNYKRVEKNEKVENSEVALDRVAEIKQAIENNQYKIN 60
Query: 61 LHETSHKMAKDLLGI 75
LHETS KMA+DLLGI
Sbjct: 61 LHETSRKMAQDLLGI 75
>emb|CAD18869.1| (AJ421720) FlgM protein [Helicobacter pylori]
Length = 67
Score = 127 bits (318), Expect = 4e-29
Identities = 63/67 (94%), Positives = 66/67 (98%)
Query: 10 MINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
MINAVSSLAPVQSLGNYKRVEKNEK+ENNE ALDRVAEIK+AIENNQYKINLHETSHKMA
Sbjct: 1 MINAVSSLAPVQSLGNYKRVEKNEKIENNETALDRVAEIKQAIENNQYKINLHETSHKMA 60
Query: 70 KDLLGIS 76
+DLLGIS
Sbjct: 61 QDLLGIS 67
>emb|CAD18868.1| (AJ421719) FlgM protein [Helicobacter pylori]
Length = 67
Score = 126 bits (316), Expect = 6e-29
Identities = 64/67 (95%), Positives = 66/67 (97%)
Query: 10 MINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
MINAVSSLAPVQSLGNYKRVEKNEKVENN AALDRVAEIK+AIENNQYKINLHETSHKMA
Sbjct: 1 MINAVSSLAPVQSLGNYKRVEKNEKVENNGAALDRVAEIKQAIENNQYKINLHETSHKMA 60
Query: 70 KDLLGIS 76
+DLLGIS
Sbjct: 61 QDLLGIS 67
>ref|NP_223768.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71854 hypothetical protein jhp1051 - Helicobacter pylori (strain J99)
gb|AAD06643.1| (AE001533) putative [Helicobacter pylori J99]
Length = 67
Score = 126 bits (316), Expect = 6e-29
Identities = 63/67 (94%), Positives = 66/67 (98%)
Query: 10 MINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
MINAVSSL PVQS+GNYKRVEKNEKVENNEAALDRVAEIK+AIENNQYKINLHETSHKMA
Sbjct: 1 MINAVSSLTPVQSVGNYKRVEKNEKVENNEAALDRVAEIKQAIENNQYKINLHETSHKMA 60
Query: 70 KDLLGIS 76
+DLLGIS
Sbjct: 61 QDLLGIS 67
>emb|CAD18866.1| (AJ421718) FlgM protein [Helicobacter pylori]
Length = 67
Score = 124 bits (310), Expect = 3e-28
Identities = 63/67 (94%), Positives = 65/67 (96%)
Query: 10 MINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMA 69
MINAVSSL VQSLGNYKRVEKNEKVENNEAALDRVAEIK+AIENNQYKINLHETSHKMA
Sbjct: 1 MINAVSSLTLVQSLGNYKRVEKNEKVENNEAALDRVAEIKQAIENNQYKINLHETSHKMA 60
Query: 70 KDLLGIS 76
+DLLGIS
Sbjct: 61 RDLLGIS 67
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.309 0.126 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,117,755
Number of Sequences: 1026957
Number of extensions: 1219110
Number of successful extensions: 4287
Number of sequences better than 1.0e-02: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4275
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 324,149,939
effective HSP length: 52
effective length of query: 24
effective length of database: 270,748,175
effective search space: 6497956200
effective search space used: 6497956200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 90 (39.3 bits)