BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644743|ref|NP_206913.1| hypothetical protein
[Helicobacter pylori 26695]
         (98 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206913.1|  (NC_000915) hypothetical protein [Helicoba...   199  5e-51
ref|NP_222826.1|  (NC_000921) putative [Helicobacter pylori ...   184  1e-46

>ref|NP_206913.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64534 hypothetical protein HP0113 - Helicobacter pylori (strain 26695)
 gb|AAD07187.1| (AE000533) H. pylori predicted coding region HP0113 [Helicobacter
          pylori 26695]
          Length = 98

 Score =  199 bits (506), Expect = 5e-51
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQ 60
          MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQ
Sbjct: 1  MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQ 60

Query: 61 ALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLDTYA 98
          ALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLDTYA
Sbjct: 61 ALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLDTYA 98



>ref|NP_222826.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71974 hypothetical protein jhp0105 - Helicobacter pylori (strain J99)
 gb|AAD05684.1| (AE001449) putative [Helicobacter pylori J99]
          Length = 98

 Score =  184 bits (468), Expect = 1e-46
 Identities = 89/98 (90%), Positives = 93/98 (94%)

Query: 1  MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQ 60
          MTINTHYTPNFTQLQTLNNINNDATIKDRNQ EQDLQQS+IQDGFSQDN +NAPDFDRLQ
Sbjct: 1  MTINTHYTPNFTQLQTLNNINNDATIKDRNQAEQDLQQSSIQDGFSQDNTQNAPDFDRLQ 60

Query: 61 ALNAINNDGEIKDRSQVEKNLASGENIPEIYSSLDTYA 98
          ALNAINNDGEIKD+SQVEK+L  GEN PEIYSSLDTYA
Sbjct: 61 ALNAINNDGEIKDKSQVEKSLVDGENTPEIYSSLDTYA 98



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.308    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,258,724
Number of Sequences: 1026957
Number of extensions: 2110100
Number of successful extensions: 6381
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6375
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 324,149,939
effective HSP length: 74
effective length of query: 24
effective length of database: 248,155,121
effective search space: 5955722904
effective search space used: 5955722904
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 90 (39.3 bits)