BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645742|ref|NP_207919.1| hypothetical protein
[Helicobacter pylori 26695]
         (84 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207919.1|  (NC_000915) hypothetical protein [Helicoba...   162  6e-40
ref|NP_223773.1|  (NC_000921) putative [Helicobacter pylori ...   116  5e-26
ref|NP_492824.1|  (NM_060423) C35E7.9.p [Caenorhabditis eleg...    39  0.009

>ref|NP_207919.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64660 hypothetical protein HP1128 - Helicobacter pylori (strain 26695)
 gb|AAD08183.1| (AE000619) H. pylori predicted coding region HP1128 [Helicobacter
          pylori 26695]
          Length = 84

 Score =  162 bits (411), Expect = 6e-40
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MSKSAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDE 60
          MSKSAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDE
Sbjct: 1  MSKSAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDE 60

Query: 61 KKDEKIAEKAEEKKDEKVVEKNAN 84
          KKDEKIAEKAEEKKDEKVVEKNAN
Sbjct: 61 KKDEKIAEKAEEKKDEKVVEKNAN 84



>ref|NP_223773.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71854 hypothetical protein jhp1056 - Helicobacter pylori (strain J99)
 gb|AAD06635.1| (AE001533) putative [Helicobacter pylori J99]
          Length = 263

 Score =  116 bits (291), Expect = 5e-26
 Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)

Query: 1  MSKSAIFVVSGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDE 60
          MSKSAIFV+SGFLAFLLYALLLYGLLLERHNKEAEKILLDL KK+EQ IDLNLEDLPS E
Sbjct: 1  MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPS-E 59

Query: 61 KKDEKIAEKAEEKKD 75
          KK+EKI +  E++ D
Sbjct: 60 KKNEKIEKVTEKQGD 74



>ref|NP_492824.1| (NM_060423) C35E7.9.p [Caenorhabditis elegans]
 pir||T33068 hypothetical protein C35E7.9 - Caenorhabditis elegans
 gb|AAC17524.1| (AF067216) Hypothetical protein C35E7.9 [Caenorhabditis elegans]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/54 (44%), Positives = 31/54 (56%), Gaps = 2/54 (3%)

Query: 28  ERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
           E   KE EK   +  KK+E+  D   E    D+KKDEK  EK E+KKD+K  +K
Sbjct: 67  EEPKKEEEK--KEKSKKSEKKDDKKEEAKKEDDKKDEKKDEKKEDKKDDKKDDK 118



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.311    0.134    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,684,717
Number of Sequences: 1026957
Number of extensions: 1870202
Number of successful extensions: 17240
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17208
Number of HSP's gapped (non-prelim): 16
length of query: 84
length of database: 324,149,939
effective HSP length: 60
effective length of query: 24
effective length of database: 262,532,519
effective search space: 6300780456
effective search space used: 6300780456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 90 (39.3 bits)