BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645758|ref|NP_207935.1| hypothetical protein
[Helicobacter pylori 26695]
         (85 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207935.1|  (NC_000915) hypothetical protein [Helicoba...   172  9e-43
ref|NP_223789.1|  (NC_000921) putative [Helicobacter pylori ...    99  1e-20

>ref|NP_207935.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64662 hypothetical protein HP1144 - Helicobacter pylori (strain 26695)
 gb|AAD08190.1| (AE000620) H. pylori predicted coding region HP1144 [Helicobacter
          pylori 26695]
          Length = 85

 Score =  172 bits (435), Expect = 9e-43
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
          MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN
Sbjct: 1  MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60

Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
          RNPLLKPYSAFIALSCTQFHYSACA
Sbjct: 61 RNPLLKPYSAFIALSCTQFHYSACA 85



>ref|NP_223789.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71853 hypothetical protein jhp1072 - Helicobacter pylori (strain J99)
 gb|AAD06645.1| (AE001534) putative [Helicobacter pylori J99]
          Length = 97

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 54/75 (72%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 1  MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
          M RSLALALQK SI R  S HR  LINHFLEQVILQ       NIKTIAF G+IKL PHN
Sbjct: 19 MERSLALALQKVSIPRSTSAHRTLLINHFLEQVILQ-------NIKTIAFRGIIKLTPHN 71

Query: 61 RNPLLKPYSAFIALS 75
           NPLLKPYSAFI L+
Sbjct: 72 ENPLLKPYSAFITLN 86



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.323    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,244,172
Number of Sequences: 1026957
Number of extensions: 1686756
Number of successful extensions: 4042
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4039
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 324,149,939
effective HSP length: 61
effective length of query: 24
effective length of database: 261,505,562
effective search space: 6276133488
effective search space used: 6276133488
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 90 (39.3 bits)