BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645759|ref|NP_207936.1| hypothetical protein
[Helicobacter pylori 26695]
         (103 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207936.1|  (NC_000915) hypothetical protein [Helicoba...   218  1e-56
ref|NP_223790.1|  (NC_000921) putative [Helicobacter pylori ...   196  4e-50
ref|NP_223530.1|  (NC_000921) putative [Helicobacter pylori ...    50  6e-06
ref|NP_207673.1|  (NC_000915) hypothetical protein [Helicoba...    50  6e-06

>ref|NP_207936.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64663 hypothetical protein HP1145 - Helicobacter pylori (strain 26695)
 gb|AAD08200.1| (AE000621) H. pylori predicted coding region HP1145 [Helicobacter
           pylori 26695]
          Length = 103

 Score =  218 bits (555), Expect = 1e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MHDITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCN 60
           MHDITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCN
Sbjct: 1   MHDITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCN 60

Query: 61  VRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN 103
           VRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN
Sbjct: 61  VRERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN 103



>ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71851 hypothetical protein jhp1073 - Helicobacter pylori (strain J99)
 gb|AAD06653.1| (AE001535) putative [Helicobacter pylori J99]
          Length = 285

 Score =  196 bits (498), Expect = 4e-50
 Identities = 94/102 (92%), Positives = 97/102 (94%)

Query: 2   HDITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCNV 61
           HDITKL  TKPLGCVVLFSKDTD VPVLE+AWEKGFEVFIANIQE PNSVPSDLKKSCNV
Sbjct: 184 HDITKLYCTKPLGCVVLFSKDTDFVPVLEAAWEKGFEVFIANIQESPNSVPSDLKKSCNV 243

Query: 62  RERSVAEIVDNLPKNQHTPKKKNFSTNEPFNNPFKDQLFKKN 103
           RER+VAEIVDNLPKNQ+TPKKKNFS NEPFNNPFKDQLFKKN
Sbjct: 244 RERNVAEIVDNLPKNQYTPKKKNFSPNEPFNNPFKDQLFKKN 285



>ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71886 hypothetical protein jhp0812 - Helicobacter pylori (strain J99)
 gb|AAD06386.1| (AE001510) putative [Helicobacter pylori J99]
          Length = 243

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 30/87 (34%), Positives = 49/87 (55%), Gaps = 1/87 (1%)

Query: 3   DITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLK-KSCNV 61
           DI ++ + K    +++FSKDTDL+P L+ A ++G  V IA++    + +  DLK  S  V
Sbjct: 157 DIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKV 216

Query: 62  RERSVAEIVDNLPKNQHTPKKKNFSTN 88
           R+ S  E+ D L   +    K N++ N
Sbjct: 217 RKLSSNEVKDKLFSIRENLTKTNWALN 243



>ref|NP_207673.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64629 hypothetical protein HP0879 - Helicobacter pylori (strain 26695)
 gb|AAD07927.1| (AE000597) H. pylori predicted coding region HP0879 [Helicobacter
           pylori 26695]
          Length = 202

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 30/87 (34%), Positives = 49/87 (55%), Gaps = 1/87 (1%)

Query: 3   DITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLK-KSCNV 61
           DI ++ + K    +++FSKDTDL+P L+ A ++G  V IA++    + +  DLK  S  V
Sbjct: 116 DIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKV 175

Query: 62  RERSVAEIVDNLPKNQHTPKKKNFSTN 88
           R+ S  E+ D L   +    K N++ N
Sbjct: 176 RKLSSNEVKDKLFSIRENLTKTNWALN 202



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,160,204
Number of Sequences: 1026957
Number of extensions: 2713814
Number of successful extensions: 6212
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6208
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 324,149,939
effective HSP length: 79
effective length of query: 24
effective length of database: 243,020,336
effective search space: 5832488064
effective search space used: 5832488064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)