BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645760|ref|NP_207937.1| hypothetical protein
[Helicobacter pylori 26695]
         (169 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207937.1|  (NC_000915) hypothetical protein [Helicoba...   344  2e-94
ref|NP_223790.1|  (NC_000921) putative [Helicobacter pylori ...   251  3e-66
ref|NP_223530.1|  (NC_000921) putative [Helicobacter pylori ...    64  9e-10

>ref|NP_207937.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64663 hypothetical protein HP1146 - Helicobacter pylori (strain 26695)
 gb|AAD08201.1| (AE000621) H. pylori predicted coding region HP1146 [Helicobacter
           pylori 26695]
          Length = 169

 Score =  344 bits (883), Expect = 2e-94
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MRTEPLFYFKKQGMFKSPCYTYGKIHILGESMEKTETTIFVDWENLLADLKAIQETDERL 60
           MRTEPLFYFKKQGMFKSPCYTYGKIHILGESMEKTETTIFVDWENLLADLKAIQETDERL
Sbjct: 1   MRTEPLFYFKKQGMFKSPCYTYGKIHILGESMEKTETTIFVDWENLLADLKAIQETDERL 60

Query: 61  KEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKN 120
           KEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKN
Sbjct: 61  KEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKN 120

Query: 121 PKDYEERVNKSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEVLI 169
           PKDYEERVNKSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEVLI
Sbjct: 121 PKDYEERVNKSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEVLI 169



>ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71851 hypothetical protein jhp1073 - Helicobacter pylori (strain J99)
 gb|AAD06653.1| (AE001535) putative [Helicobacter pylori J99]
          Length = 285

 Score =  251 bits (640), Expect = 3e-66
 Identities = 127/158 (80%), Positives = 135/158 (85%), Gaps = 4/158 (2%)

Query: 14  MFKSPCYTY----GKIHILGESMEKTETTIFVDWENLLADLKAIQETDERLKEPNFNFNN 69
           MF+SPCYT      K     ++M KTETTIFVDWENLLADLKAIQETDERLKE NFNFNN
Sbjct: 1   MFRSPCYTQPLCVAKFLFFRKNMGKTETTIFVDWENLLADLKAIQETDERLKESNFNFNN 60

Query: 70  PEQLLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVN 129
           PEQLL LIRSFLEPEEELKRIYFYVSEPFTEVEPRIK NK EELEEYKEKNPK+YEE+VN
Sbjct: 61  PEQLLALIRSFLEPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVN 120

Query: 130 KSGIIQSFNHNIAQQNQVKLRVGRVMFKFTNESEDKEV 167
           KSGIIQSFNH IAQQNQVKLRVGRV F F +  +D+ V
Sbjct: 121 KSGIIQSFNHAIAQQNQVKLRVGRVRFMFKDMPKDQRV 158



>ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71886 hypothetical protein jhp0812 - Helicobacter pylori (strain J99)
 gb|AAD06386.1| (AE001510) putative [Helicobacter pylori J99]
          Length = 243

 Score = 63.5 bits (153), Expect = 9e-10
 Identities = 45/138 (32%), Positives = 68/138 (48%), Gaps = 30/138 (21%)

Query: 34  KTETTIFVDWENLLADLKAIQETDERLKEPNFNFNNPEQLLVLIRSFLEPEEELKRIYFY 93
           K  T I VDWEN   D+K  +           N+N    ++V IR+FL  +E + RIYFY
Sbjct: 2   KANTIILVDWENFRRDIKQTKCV---------NYNIALDVIVTIRAFLLDDEWISRIYFY 52

Query: 94  VSEPFTEVEPRIKGNKNEELEEYKEKNP---------KDYEERVNKS---------GIIQ 135
            + PF + E  +   +N+ L+   EKNP          D EE +  S           ++
Sbjct: 53  TTPPF-DFEHALWDKRNDTLQ--NEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVE 109

Query: 136 SFNHNIAQQNQVKLRVGR 153
           +F H++A  +QV+LR+GR
Sbjct: 110 NFQHDLASLDQVELRLGR 127



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,118,344
Number of Sequences: 1026957
Number of extensions: 4683259
Number of successful extensions: 12622
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12617
Number of HSP's gapped (non-prelim): 3
length of query: 169
length of database: 324,149,939
effective HSP length: 112
effective length of query: 57
effective length of database: 209,130,755
effective search space: 11920453035
effective search space used: 11920453035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 93 (40.4 bits)