BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645764|ref|NP_207941.1| hypothetical protein
[Helicobacter pylori 26695]
         (115 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207941.1|  (NC_000915) hypothetical protein [Helicoba...   237  2e-62
ref|NP_223794.1|  (NC_000921) putative [Helicobacter pylori ...   219  4e-57
ref|NP_281883.1|  (NC_002163) hypothetical protein Cj0711 [C...    64  2e-10
ref|NP_657812.1|  (NC_003995) hypothetical protein predicted...    40  0.004
>ref|NP_207941.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64663 hypothetical protein HP1150 - Helicobacter pylori (strain 26695)
 gb|AAD08202.1| (AE000621) H. pylori predicted coding region HP1150 [Helicobacter
           pylori 26695]
          Length = 115

 Score =  237 bits (604), Expect = 2e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
           MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH
Sbjct: 1   MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60

Query: 61  PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP 115
           PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP
Sbjct: 61  PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP 115
>ref|NP_223794.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71852 hypothetical protein jhp1077 - Helicobacter pylori (strain J99)
 gb|AAD06657.1| (AE001535) putative [Helicobacter pylori J99]
          Length = 117

 Score =  219 bits (558), Expect = 4e-57
 Identities = 108/117 (92%), Positives = 113/117 (96%), Gaps = 2/117 (1%)

Query: 1   MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
           M +SDPLNTPFSQA+CKDYS+CVATFLEKYLKKVVSFPQALSVE+TLLEDKVKQITIYTH
Sbjct: 1   MRKSDPLNTPFSQAECKDYSYCVATFLEKYLKKVVSFPQALSVEYTLLEDKVKQITIYTH 60

Query: 61  PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFAS--KNGDKNPHVLGDQTP 115
           PSDMGHVIGKEGKMVSAIKAF+SGVKAKDGFSYKIVVFAS  KNGDKNPH LGDQTP
Sbjct: 61  PSDMGHVIGKEGKMVSAIKAFVSGVKAKDGFSYKIVVFASNDKNGDKNPHALGDQTP 117
>ref|NP_281883.1| (NC_002163) hypothetical protein Cj0711 [Campylobacter jejuni]
 pir||B81342 hypothetical protein Cj0711 [imported] - Campylobacter jejuni
          (strain NCTC 11168)
 emb|CAB72985.1| (AL139076) hypothetical protein Cj0711 [Campylobacter jejuni]
          Length = 80

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 29/77 (37%), Positives = 45/77 (57%)

Query: 23 VATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFI 82
          V  FL +Y K +  +P+ +  +   L +   +I ++ H  D G +IGK GKM++AIK  I
Sbjct: 2  VENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTGKLIGKNGKMINAIKTVI 61

Query: 83 SGVKAKDGFSYKIVVFA 99
          S  K+KD  SY++ V A
Sbjct: 62 SAYKSKDASSYRVTVKA 78
>ref|NP_657812.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
          anthracis A2012] [Bacillus anthracis str. A2012]
          Length = 75

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 27 LEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFISGV 85
          +E  +K +V  P+ + V   L   ++K   +  HP D+G VIGK+GK+  AI+  +  V
Sbjct: 5  VETIVKPLVDHPEDVKVTQELYNGEIKY-RLTVHPEDVGKVIGKQGKVAKAIRMLLYSV 62
  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,602,138
Number of Sequences: 1026957
Number of extensions: 2528206
Number of successful extensions: 5458
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5454
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 324,149,939
effective HSP length: 91
effective length of query: 24
effective length of database: 230,696,852
effective search space: 5536724448
effective search space used: 5536724448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)