BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645764|ref|NP_207941.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207941.1| (NC_000915) hypothetical protein [Helicoba... 237 2e-62
ref|NP_223794.1| (NC_000921) putative [Helicobacter pylori ... 219 4e-57
ref|NP_281883.1| (NC_002163) hypothetical protein Cj0711 [C... 64 2e-10
ref|NP_657812.1| (NC_003995) hypothetical protein predicted... 40 0.004
>ref|NP_207941.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64663 hypothetical protein HP1150 - Helicobacter pylori (strain 26695)
gb|AAD08202.1| (AE000621) H. pylori predicted coding region HP1150 [Helicobacter
pylori 26695]
Length = 115
Score = 237 bits (604), Expect = 2e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH
Sbjct: 1 MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
Query: 61 PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP 115
PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP
Sbjct: 61 PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFASKNGDKNPHVLGDQTP 115
>ref|NP_223794.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71852 hypothetical protein jhp1077 - Helicobacter pylori (strain J99)
gb|AAD06657.1| (AE001535) putative [Helicobacter pylori J99]
Length = 117
Score = 219 bits (558), Expect = 4e-57
Identities = 108/117 (92%), Positives = 113/117 (96%), Gaps = 2/117 (1%)
Query: 1 MHESDPLNTPFSQADCKDYSHCVATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTH 60
M +SDPLNTPFSQA+CKDYS+CVATFLEKYLKKVVSFPQALSVE+TLLEDKVKQITIYTH
Sbjct: 1 MRKSDPLNTPFSQAECKDYSYCVATFLEKYLKKVVSFPQALSVEYTLLEDKVKQITIYTH 60
Query: 61 PSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFAS--KNGDKNPHVLGDQTP 115
PSDMGHVIGKEGKMVSAIKAF+SGVKAKDGFSYKIVVFAS KNGDKNPH LGDQTP
Sbjct: 61 PSDMGHVIGKEGKMVSAIKAFVSGVKAKDGFSYKIVVFASNDKNGDKNPHALGDQTP 117
>ref|NP_281883.1| (NC_002163) hypothetical protein Cj0711 [Campylobacter jejuni]
pir||B81342 hypothetical protein Cj0711 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72985.1| (AL139076) hypothetical protein Cj0711 [Campylobacter jejuni]
Length = 80
Score = 64.3 bits (155), Expect = 2e-10
Identities = 29/77 (37%), Positives = 45/77 (57%)
Query: 23 VATFLEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFI 82
V FL +Y K + +P+ + + L + +I ++ H D G +IGK GKM++AIK I
Sbjct: 2 VENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTGKLIGKNGKMINAIKTVI 61
Query: 83 SGVKAKDGFSYKIVVFA 99
S K+KD SY++ V A
Sbjct: 62 SAYKSKDASSYRVTVKA 78
>ref|NP_657812.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 75
Score = 40.4 bits (93), Expect = 0.004
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 27 LEKYLKKVVSFPQALSVEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFISGV 85
+E +K +V P+ + V L ++K + HP D+G VIGK+GK+ AI+ + V
Sbjct: 5 VETIVKPLVDHPEDVKVTQELYNGEIKY-RLTVHPEDVGKVIGKQGKVAKAIRMLLYSV 62
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,602,138
Number of Sequences: 1026957
Number of extensions: 2528206
Number of successful extensions: 5458
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5454
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 324,149,939
effective HSP length: 91
effective length of query: 24
effective length of database: 230,696,852
effective search space: 5536724448
effective search space used: 5536724448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)