BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645768|ref|NP_207945.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207945.1| (NC_000915) hypothetical protein [Helicoba... 270 3e-72
ref|NP_223798.1| (NC_000921) putative [Helicobacter pylori ... 265 6e-71
ref|NP_208168.1| (NC_000915) hypothetical protein [Helicoba... 98 1e-20
ref|NP_224009.1| (NC_000921) putative [Helicobacter pylori ... 96 7e-20
ref|NP_282223.1| (NC_002163) hypothetical protein Cj1075 [C... 93 4e-19
ref|NP_391418.1| (NC_000964) similar to hypothetical protei... 48 2e-05
ref|NP_622173.1| (NC_003869) conserved hypothetical protein... 45 1e-04
>ref|NP_207945.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64664 hypothetical protein HP1154 - Helicobacter pylori (strain 26695)
gb|AAD08203.1| (AE000621) H. pylori predicted coding region HP1154 [Helicobacter
pylori 26695]
Length = 135
Score = 270 bits (689), Expect = 3e-72
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY
Sbjct: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
Query: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF
Sbjct: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
Query: 121 RDPLKSFVIQERERA 135
RDPLKSFVIQERERA
Sbjct: 121 RDPLKSFVIQERERA 135
>ref|NP_223798.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71852 hypothetical protein jhp1081 - Helicobacter pylori (strain J99)
gb|AAD06651.1| (AE001535) putative [Helicobacter pylori J99]
Length = 135
Score = 265 bits (677), Expect = 6e-71
Identities = 131/135 (97%), Positives = 134/135 (99%)
Query: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
MNYFLKAPILGFEHINEVRLEKIDSLFSRL+ QTNSPMALDMVLVNPYCLREYSFVIPKY
Sbjct: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLMGQTNSPMALDMVLVNPYCLREYSFVIPKY 60
Query: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF
Sbjct: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
Query: 121 RDPLKSFVIQERERA 135
RDPLKSFV++ERERA
Sbjct: 121 RDPLKSFVVKERERA 135
>ref|NP_208168.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64692 hypothetical protein HP1377 - Helicobacter pylori (strain 26695)
gb|AAD08427.1| (AE000638) H. pylori predicted coding region HP1377 [Helicobacter
pylori 26695]
Length = 146
Score = 98.2 bits (243), Expect = 1e-20
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
M + +KAPILGFE I+++RL+KID +F RL S T + LVNP+ LR+Y F +P
Sbjct: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRLNS-TEENSVVSFTLVNPFALRKYEFEVPTP 76
Query: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
+++LLEL+ V V ++V+Q +E S VN+LAPL+FN QV L YP +
Sbjct: 77 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHL 136
Query: 121 RDPLKS 126
R+ + S
Sbjct: 137 RENILS 142
>ref|NP_224009.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71824 hypothetical protein jhp1291 - Helicobacter pylori (strain J99)
gb|AAD06873.1| (AE001552) putative [Helicobacter pylori J99]
Length = 129
Score = 95.9 bits (237), Expect = 7e-20
Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLREYSFVIPKY 60
M + +KAPILGFE I+++ L+KID +F RL S ++ + + LVNP+ LR+Y F +P
Sbjct: 1 MIFDVKAPILGFETIHKMHLQKIDEIFLRLNSAEDNSV-VSFTLVNPFALRKYEFEVPTP 59
Query: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
+++LLEL+ V V ++V+Q +E S VN+LAPL+FN QV L YP +
Sbjct: 60 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSKKYPHYHL 119
Query: 121 RDPLKS 126
R+ + S
Sbjct: 120 RENILS 125
>ref|NP_282223.1| (NC_002163) hypothetical protein Cj1075 [Campylobacter jejuni]
pir||F81310 hypothetical protein Cj1075 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73330.1| (AL139077) hypothetical protein Cj1075 [Campylobacter jejuni]
Length = 129
Score = 93.2 bits (230), Expect = 4e-19
Identities = 50/129 (38%), Positives = 74/129 (56%), Gaps = 3/129 (2%)
Query: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYCLR-EYSFVIPK 59
M +K PILGFE + ID +F RL S + VL+NPY +R +Y F IP
Sbjct: 1 MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSF--VLINPYLIRPDYEFDIPT 58
Query: 60 YIELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFG 119
Y + LL L S ++++ +V + K++E+S VNFLAP+V N N QV L ++YPDF
Sbjct: 59 YYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNNTMVQVILDTVNYPDFF 118
Query: 120 FRDPLKSFV 128
D + +++
Sbjct: 119 QADQIANYI 127
>ref|NP_391418.1| (NC_000964) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
pir||C70042 conserved hypothetical protein yviF - Bacillus subtilis
gb|AAC44949.1| (U56901) transmembrane protein [Bacillus subtilis]
emb|CAB15555.1| (Z99122) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
Length = 143
Score = 47.8 bits (112), Expect = 2e-05
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCL-REYSFVIPKYIELLLELDSHSKVEVYCVVVLQ 82
DS F L S T+ +A ++V+P+ + Y F + + LL++D+ VEV ++ +
Sbjct: 42 DSPFVALQSVTSENLAF--IVVSPFIFFKNYEFDLDESTAELLDIDNIQDVEVMTILTMA 99
Query: 83 KNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDY 115
+ E S N LAP++ N KN QV L Y
Sbjct: 100 EPFEKSTANLLAPIIVNRKNMMAKQVVLHDSSY 132
>ref|NP_622173.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM23777.1| (AE013020) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 150
Score = 45.4 bits (106), Expect = 1e-04
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 4 FLKAPILGFEHINEVRL---EKIDSLFSRLISQTNSPMALDMVLVNPYCLR-EYSFVIPK 59
+ + I GFE ++ + E+ D F L S N +A V+++P + +Y+F I +
Sbjct: 20 YFEEGIPGFEELHNFLIIGDEEEDMPFKWLQSIDNPDIAF--VVIDPRVFKPDYTFEIDE 77
Query: 60 YIELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDY 115
++ L ++ + + ++ +VV+ + +E+ N AP++ N++N G Q+ L Y
Sbjct: 78 ELKNFLAVEDVNHLLIFVIVVIPEKIEEMTANLKAPIIINAENNRGVQIILDNDKY 133
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.141 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,180,989
Number of Sequences: 1026957
Number of extensions: 2901835
Number of successful extensions: 6898
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6888
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 324,149,939
effective HSP length: 111
effective length of query: 24
effective length of database: 210,157,712
effective search space: 5043785088
effective search space used: 5043785088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 89 (38.9 bits)