BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645777|ref|NP_207954.1| hypothetical protein
[Helicobacter pylori 26695]
(63 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223807.1| (NC_000921) putative component of cation t... 123 5e-28
ref|NP_435572.1| (NC_003037) FixS2 nitrogen fixation protei... 45 1e-04
ref|NP_420221.1| (NC_002696) cytochrome oxidase maturation ... 45 2e-04
emb|CAA04808.1| (AJ001522) FixS protein [Rhizobium legumino... 44 3e-04
ref|NP_282301.1| (NC_002163) small hydrophobic protein [Cam... 42 0.001
emb|CAA64890.1| (X95634) fixS [Bradyrhizobium japonicum] >g... 42 0.001
gb|AAC46115.1| (AF016223) CcoS [Rhodobacter capsulatus] 41 0.004
ref|NP_106935.1| (NC_002678) nitrogen fixation protein fixS... 40 0.006
>ref|NP_223807.1| (NC_000921) putative component of cation transport for cbb3-type
oxidase [Helicobacter pylori J99]
ref|NP_207954.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64665 probable component of cation transport for cbb3-type oxidase -
Helicobacter pylori
gb|AAD08214.1| (AE000622) H. pylori predicted coding region HP1163 [Helicobacter
pylori 26695]
gb|AAD06661.1| (AE001536) putative component of cation transport for cbb3-type
oxidase [Helicobacter pylori J99]
Length = 63
Score = 123 bits (308), Expect = 5e-28
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR 60
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR
Sbjct: 1 MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKR 60
Query: 61 QKN 63
QKN
Sbjct: 61 QKN 63
>ref|NP_435572.1| (NC_003037) FixS2 nitrogen fixation protein [Sinorhizobium
meliloti]
gb|AAK64984.1| (AE007224) FixS2 nitrogen fixation protein [Sinorhizobium
meliloti]
Length = 86
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 6 LTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASD 50
L +++ V++ MG VGL+AF W ++SGQ+DD E +L D D
Sbjct: 4 LALLVPVALAMGFVGLLAFFWSLRSGQYDDLDGAAERILLDDEED 48
>ref|NP_420221.1| (NC_002696) cytochrome oxidase maturation protein, cbb3-type
[Caulobacter crescentus CB15]
gb|AAK23389.1| (AE005815) cytochrome oxidase maturation protein, cbb3-type
[Caulobacter crescentus CB15]
Length = 55
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/46 (41%), Positives = 29/46 (62%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASD 50
I+ + S+ +G +GL+AF W +K+GQ+DD K E +LYD D
Sbjct: 3 IVLFLAPASIGLGALGLLAFFWTMKAGQYDDPKGDAERILYDHLDD 48
>emb|CAA04808.1| (AJ001522) FixS protein [Rhizobium leguminosarum]
Length = 52
Score = 44.3 bits (103), Expect = 3e-04
Identities = 19/49 (38%), Positives = 33/49 (66%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNE 53
+L ++ +++LMG +GL+AFLW +KSGQ+DD + +L + +D E
Sbjct: 3 MLIYLIPIALLMGGIGLLAFLWSLKSGQYDDLQGAAWRILAEDETDQRE 51
>ref|NP_282301.1| (NC_002163) small hydrophobic protein [Campylobacter jejuni]
pir||D81320 small hydrophobic protein Cj1154c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73408.1| (AL139077) small hydrophobic protein [Campylobacter jejuni]
Length = 68
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/58 (37%), Positives = 35/58 (59%), Gaps = 2/58 (3%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQK 62
I+ +M+ VS+L + L LWG+K+ QFDD+ + + L D L +AI E+R+K
Sbjct: 4 IIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKF--TTLNDDEDSLRDAIELERRKK 59
>emb|CAA64890.1| (X95634) fixS [Bradyrhizobium japonicum]
emb|CAA06286.1| (AJ005001) FixS protein [Bradyrhizobium japonicum]
Length = 55
Score = 42.4 bits (98), Expect = 0.001
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDD 35
EIL I++ +++++G GL+AFLW ++SGQ+DD
Sbjct: 2 EILVILVPLALMLGGAGLVAFLWSLRSGQYDD 33
>gb|AAC46115.1| (AF016223) CcoS [Rhodobacter capsulatus]
Length = 52
Score = 40.8 bits (94), Expect = 0.004
Identities = 17/46 (36%), Positives = 29/46 (62%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASD 50
+LT ++ +S+ +G GL+AFLW +++ Q+DD K E +L D
Sbjct: 3 VLTYLIPISLFLGGFGLVAFLWSLRARQYDDPKGDAERILSGKYDD 48
>ref|NP_106935.1| (NC_002678) nitrogen fixation protein fixS [Mesorhizobium loti]
dbj|BAB52721.1| (AP003009) nitrogen fixation protein; FixS [Mesorhizobium loti]
emb|CAD31415.1| (AL672112) PROBABLE NITROGEN FIXATION FIXS TRANSMEMBRANE PROTEIN
[Mesorhizobium loti]
Length = 49
Score = 40.0 bits (92), Expect = 0.006
Identities = 17/42 (40%), Positives = 27/42 (63%)
Query: 5 ILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYD 46
IL ++ V++ +G +GL FLW +KSGQ++D E +L D
Sbjct: 3 ILVYLMPVALFLGALGLTGFLWALKSGQYEDLDGAAERILRD 44
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,061,241
Number of Sequences: 1026957
Number of extensions: 861776
Number of successful extensions: 3758
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3751
Number of HSP's gapped (non-prelim): 8
length of query: 63
length of database: 324,149,939
effective HSP length: 39
effective length of query: 24
effective length of database: 284,098,616
effective search space: 6818366784
effective search space used: 6818366784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)