BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645781|ref|NP_207958.1| hypothetical protein
[Helicobacter pylori 26695]
(471 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 972 0.0
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 941 0.0
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 335 5e-91
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 333 2e-90
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 259 5e-68
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 254 2e-66
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 244 2e-63
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 241 2e-62
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 223 4e-57
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 222 8e-57
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 167 2e-40
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 164 2e-39
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 139 6e-32
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 137 3e-31
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 116 5e-25
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 112 9e-24
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 972 bits (2514), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MKKASQVLFFGAFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY 60
MKKASQVLFFGAFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY
Sbjct: 1 MKKASQVLFFGAFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY 60
Query: 61 LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNIL 120
LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNIL
Sbjct: 61 LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNIL 120
Query: 121 QSDDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ 180
QSDDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ
Sbjct: 121 QSDDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ 180
Query: 181 YKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQL 240
YKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQL
Sbjct: 181 YKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQL 240
Query: 241 TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK 300
TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK
Sbjct: 241 TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK 300
Query: 301 SNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG 360
SNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG
Sbjct: 301 SNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG 360
Query: 361 SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF 420
SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF
Sbjct: 361 SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF 420
Query: 421 TEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTALVASF 471
TEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTALVASF
Sbjct: 421 TEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTALVASF 471
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 941 bits (2432), Expect = 0.0
Identities = 454/471 (96%), Positives = 463/471 (97%)
Query: 1 MKKASQVLFFGAFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY 60
M KASQVLFFGAFLS+SLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY
Sbjct: 1 MPKASQVLFFGAFLSTSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGY 60
Query: 61 LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNIL 120
LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFED SVAYNLFGYYDGFMG YTNIL
Sbjct: 61 LGLGFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDGSVAYNLFGYYDGFMGVYTNIL 120
Query: 121 QSDDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ 180
Q+D L TQNMK+NKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQ+SGQ
Sbjct: 121 QTDSLETQNMKHNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQVSGQ 180
Query: 181 YKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQL 240
YK ARLTWFSS+GRAFAYGSFLMDWFAARTTYSGGFTKN+ GGYDSHGRKVLYGTHAVQL
Sbjct: 181 YKHARLTWFSSWGRAFAYGSFLMDWFAARTTYSGGFTKNNNGGYDSHGRKVLYGTHAVQL 240
Query: 241 TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK 300
TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK
Sbjct: 241 TYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVK 300
Query: 301 SNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG 360
SNGSPVY+YDTPATQNGQNLII QRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG
Sbjct: 301 SNGSPVYRYDTPATQNGQNLIIRQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMG 360
Query: 361 SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF 420
SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF
Sbjct: 361 SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKF 420
Query: 421 TEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTALVASF 471
TEYLSGSVDLAYYGV+TNKGFKPGENGPVPK+FPALYSDRSALYTALVASF
Sbjct: 421 TEYLSGSVDLAYYGVHTNKGFKPGENGPVPKNFPALYSDRSALYTALVASF 471
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 335 bits (860), Expect = 5e-91
Identities = 198/484 (40%), Positives = 269/484 (54%), Gaps = 50/484 (10%)
Query: 14 LSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVS 73
LS+SLQ F+ K+ + S +GFN+ KI+ RGIYP + F T G + LPK +
Sbjct: 20 LSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPKGLK 79
Query: 74 D--HVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQS--------- 122
D HVL+GKIGG +G + YD TK + SV YN GY+DG++GG +L
Sbjct: 80 DQGHVLEGKIGGTLGGVAYDSTKFNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALG 139
Query: 123 ------DDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQ 176
D +A N + NK RNY+ ++A+LEY YK+ F K GRY S PY SG TQGF+
Sbjct: 140 SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAPYMSGYTQGFE 199
Query: 177 ISGQYKKA-----RLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKV 231
IS + K +L WFSS+GRAFAYG ++ D+++ RT G T N
Sbjct: 200 ISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLN------------ 247
Query: 232 LYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFP 291
YG H V TY+ + F+ SP + +PGV +G+DSNPNF+G GFRS+T P
Sbjct: 248 -YGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLP 306
Query: 292 IYYPWMIVKSNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNM 351
++ P Y+Y A GQ+L+I QRFD N +N AFYKV++NAN +IG
Sbjct: 307 VHDPLR------RDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
Query: 352 GNPSGVIMGSNSVYAGFTGTALKR----DAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
GNP G+ +NSVY G AL DA + ++ GG H KK+ W ++++ ++
Sbjct: 361 GNPLGIDFWTNSVYD--IGQALSHVVTADAVSGWVFGGGVH--KKWLWGTLWRWTSGTLA 416
Query: 408 WEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTAL 467
EA A +++GYK ++ L+ SV L Y GV T+ GF G P P ALYSDRS L T L
Sbjct: 417 NEASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGS-KALYSDRSHLMTTL 475
Query: 468 VASF 471
A F
Sbjct: 476 SAKF 479
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 333 bits (855), Expect = 2e-90
Identities = 195/484 (40%), Positives = 267/484 (54%), Gaps = 50/484 (10%)
Query: 14 LSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVS 73
LS+S+Q F+ K+ + S +GFN+ KI+ RGIYP + F T G + L K +
Sbjct: 20 LSASVQAFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLSKSLK 79
Query: 74 D--HVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQS--------- 122
D HVL+GK+GG +G I YD TK + SV YN GY+DG++GG +L
Sbjct: 80 DQGHVLEGKVGGTIGGIAYDSTKFNQGGSVIYNYIGYWDGYLGGKRALLDGTSIHECALG 139
Query: 123 ------DDLATQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQ 176
D +A N + NK RNY+ ++A+LEY YK+ F K GRY S PY S TQGF+
Sbjct: 140 SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFAAKGGRYQSNAPYMSSYTQGFE 199
Query: 177 ISGQYKKA-----RLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKV 231
IS + K +L WFSS+GRAFAYG ++ D+++ RT G T N
Sbjct: 200 ISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVIKNGRTLN------------ 247
Query: 232 LYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFP 291
YG H V TY+ + F+ SP + +PGV +G+DSNPNF+G GFRS+T P
Sbjct: 248 -YGIHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSETKAYILLP 306
Query: 292 IYYPWMIVKSNGSPVYKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNM 351
++ P Y+Y A GQ+L+I QRFD N +N AFYKV++NAN +IG
Sbjct: 307 VHAPLK------RDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTT 360
Query: 352 GNPSGVIMGSNSVYAGFTGTALKR----DAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
GNP G+ +NSVY G AL DA + ++ GG H KK+ W ++++ ++
Sbjct: 361 GNPLGIDFWTNSVYD--IGQALSHVVTADAVSGWVFGGGVH--KKWLWGTLWRWTSGALA 416
Query: 408 WEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGENGPVPKDFPALYSDRSALYTAL 467
EA A +++GYK ++ L+ SV L Y GV T+ GF G P P ALYSDRS L T L
Sbjct: 417 NEASAAVNVGYKISKSLTASVKLEYLGVMTHSGFTVGSYRPTPGS-KALYSDRSHLMTTL 475
Query: 468 VASF 471
A F
Sbjct: 476 SAKF 479
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 259 bits (662), Expect = 5e-68
Identities = 165/462 (35%), Positives = 237/462 (50%), Gaps = 39/462 (8%)
Query: 16 SSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDH 75
S L F+ K +G + S +GFN K+N + GI+P F T L + +LLPK + H
Sbjct: 19 SPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKH 78
Query: 76 VLKGKIGGMVGSIFYDGTKKFED-------SSVAYNLFGYYDGFMGGYTNILQSDDLATQ 128
LK +GG++G++ YD TK D S + L G + GF+G N D L
Sbjct: 79 SLKIGVGGILGALAYDSTKTLIDQATHQIYGSELFYLIGRWWGFLG---NAPWKDSL--- 132
Query: 129 NMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQY-KKARLT 187
++ + + RNYV ++YL Y+Y + F +K GRYLS M + S TQGF++ + K L
Sbjct: 133 -IESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSSYTQGFELDYKINSKIALK 191
Query: 188 WFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLY-GTHAVQLTYKPHR 246
WFSSFGRA A+G ++ DW+A T GRK +Y G HA QL +
Sbjct: 192 WFSSFGRALAFGQWIRDWYAPIVT--------------EDGRKEVYDGIHAAQLYFSSKH 237
Query: 247 FLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPV 306
+ F Y SP+I+ APGVKI DSNP F G G R+ T I FP+Y + V
Sbjct: 238 VQVMPFAYFSPKIYGAPGVKIHIDSNPKFKGLGLRAQTTINVIFPVY------AKDLYDV 291
Query: 307 YKYDTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYA 366
Y ++ + G +L+I QRFD N +N +Y+ F NAN IG GNP +NSVY
Sbjct: 292 YWRNSKIGEWGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWYGNPIPFNYRNNSVYG 351
Query: 367 GFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSG 426
G A+ DA + ++ GG + + F W +Y+ + + E ++LGYK+ +
Sbjct: 352 GVFSNAITADAVSGYVFGGGVY--RGFLWGILGRYTYATRASERSINLNLGYKWGSFARV 409
Query: 427 SVDLAYYGVYTNKGFKPGE-NGPVPKDFPALYSDRSALYTAL 467
V+L YY V + G++ GP K F A DRS L ++
Sbjct: 410 DVNLEYYVVSMHNGYRLDYLTGPFNKAFKADAQDRSNLMVSM 451
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 254 bits (649), Expect = 2e-66
Identities = 157/454 (34%), Positives = 231/454 (50%), Gaps = 23/454 (5%)
Query: 16 SSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDH 75
S L F+ K +G + S +GFN K+N + GI+P F T L + +LLPK + H
Sbjct: 19 SPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKH 78
Query: 76 VLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQSDDLATQNMKYNKN 135
LK +GG++G++ YD TK D + F+G + L ++ + +
Sbjct: 79 SLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGDAPWKDSRIESDAH 138
Query: 136 VRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQY-KKARLTWFSSFGR 194
RNYV ++YL Y+Y + F +K GRYLS M + SG TQGF++ + K L WFSSFGR
Sbjct: 139 TRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGR 198
Query: 195 AFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYY 254
A A G ++ DW+A T G + V YG HAVQL + F+Y
Sbjct: 199 ALAAGQWIRDWYAPIVTEDG-------------RKDVDYGIHAVQLYFSNKHVQATPFFY 245
Query: 255 LSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPAT 314
SP+ + APG+KI DSNP F G G RS T I FP+Y K V++ ++
Sbjct: 246 FSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVY-----AKDLYDVVWR-NSKIG 299
Query: 315 QNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGTALK 374
+ G +L+I QRFD N +N +Y+ F NAN IG GNP + SNS+Y A+
Sbjct: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
Query: 375 RDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYG 434
D+ + ++ GG + + F W +Y+ + + E + LGY++ + S V+L YY
Sbjct: 360 ADSVSGYVFGGGVY--RGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYE 417
Query: 435 VYTNKGFKPGE-NGPVPKDFPALYSDRSALYTAL 467
V + G+K + P K F A DRS L ++
Sbjct: 418 VSMHTGYKVNDLTSPFNKAFKANTQDRSNLMVSV 451
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 244 bits (622), Expect = 2e-63
Identities = 167/512 (32%), Positives = 239/512 (46%), Gaps = 69/512 (13%)
Query: 2 KKASQVLFFGAFLSSSLQGFE----AKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATI 57
K + +LF LSS Q F+ AK+ + S +GFN IN +G+YP + F TI
Sbjct: 9 KNIATLLFL---LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTI 65
Query: 58 AGYLGLGFS-LLPKKVS--DHVLKGKIGGMVGSIFYDGTKKFEDS-------SVAYNLFG 107
Y+ + F+ LLPK + H L G +GG G++ YD TK F + ++A+N G
Sbjct: 66 MAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVG 125
Query: 108 YYDGFMGG-----------------YTNILQSDDLATQNMK----------YNKNVRNYV 140
Y+ G +G Y + Q++ N + Y + RNYV
Sbjct: 126 YWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYV 185
Query: 141 FSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFGRAFAYGS 200
+AYL Y YK+ FEI+ GRY S Y SG QG ++ + WFSSFGR FAY
Sbjct: 186 IYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNE 245
Query: 201 FLMDWFAART-TYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQI 259
+L ++++ +T T G T N G HA + + I+ F Y SP
Sbjct: 246 WLYNFYSPKTYTLKNGQTINP-------------GVHAFYAIWNYKGWSIQPFVYFSPFN 292
Query: 260 FNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPATQNGQN 319
P I +DSNP F+G GFRS T + P Y Y++ PA +N +
Sbjct: 293 EYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFY------AKRFWDTYQFGMPAGKNAHS 346
Query: 320 LIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGT---ALKRD 376
L+I Q+F+ N YN YK F NAN IG GN G +N+VYA + + +
Sbjct: 347 LMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDAN 406
Query: 377 AATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVY 436
A T+F GG H +K W + + + E ++ GYKFT+ S + YY V
Sbjct: 407 AFTVFAFGGGVH--RKLLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVL 464
Query: 437 TNKGFKPGENGPVPKDFPALYSDRSALYTALV 468
++G+K G NGP PA DRS ++T +V
Sbjct: 465 MHQGYKMGWNGPKLDSQPATDQDRSHIFTEIV 496
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 241 bits (614), Expect = 2e-62
Identities = 165/502 (32%), Positives = 234/502 (45%), Gaps = 63/502 (12%)
Query: 8 LFFGAFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFS- 66
LFF + L G AK+ + S +GFN IN +GIYP + F TI Y+ + F+
Sbjct: 17 LFFSQSEAFDL-GKIAKIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDFTE 75
Query: 67 LLPKKVS--DHVLKGKIGGMVGSIFYDGTKKFEDS-------SVAYNLFGYYDGFMGG-- 115
LLPK + H L G +GG G++ YD TK F + ++ +N GY+ G +G
Sbjct: 76 LLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQKP 135
Query: 116 ---------------YTNILQSDDLATQNMK----------YNKNVRNYVFSDAYLEYAY 150
Y + Q++ N + Y + RNYV +AYL Y Y
Sbjct: 136 WASCGLATGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADHTRNYVIYNAYLRYNY 195
Query: 151 KNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFGRAFAYGSFLMDWFAART 210
K+ FEI+ GRY S Y SG QG ++ + WFSSFGR FAY +L ++++ +T
Sbjct: 196 KDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKT 255
Query: 211 -TYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGW 269
T G T N G HA + + F I+ F Y SP P I +
Sbjct: 256 YTLKNGQTINP-------------GVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTITY 302
Query: 270 DSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPATQNGQNLIILQRFDIN 329
DSNP F+G GFRS T + P Y Y++ A +N +L+I Q+F+ N
Sbjct: 303 DSNPTFTGLGFRSQTDVTVLNPFY------AKRFWDTYQFGMLAGKNAHSLMIKQKFEWN 356
Query: 330 NYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGT---ALKRDAATIFLSCGG 386
YN YK F NAN IG GN G +N+VYA + + +A T+F GG
Sbjct: 357 EYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGG 416
Query: 387 THFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGEN 446
H +K W + + + E ++LGYKFT+ S + YY V ++G+K G N
Sbjct: 417 VH--RKLLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWN 474
Query: 447 GPVPKDFPALYSDRSALYTALV 468
GP PA DRS ++T +V
Sbjct: 475 GPKLDSQPATDQDRSHIFTEIV 496
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 223 bits (568), Expect = 4e-57
Identities = 159/509 (31%), Positives = 240/509 (46%), Gaps = 59/509 (11%)
Query: 12 AFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKK 71
+FL + F+ + +G V+ S IGFN +IN ++GIYP + F I + +LLPK
Sbjct: 16 SFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKG 75
Query: 72 VSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFG-YYDGFMGGYTNILQSDDL----A 126
+H L +GG + +I YD TK ++ + +FG + F+GGY + L A
Sbjct: 76 TENHRLSVSLGGAIAAIPYDKTK-YDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYA 134
Query: 127 TQNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ-YK--- 182
+ + + R YV A+L Y YK+ F KAGRY + + + SG QG+++ Q YK
Sbjct: 135 GTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTET 194
Query: 183 -KARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLT 241
+ R W+SSFGR A+ S++ ++FA G N+ + + YG H + T
Sbjct: 195 QRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDF------INYGWHGITTT 248
Query: 242 YKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKS 301
Y + FYY +P+ +NAPG K+ +D+N NF GFRS + I+ FP+YY
Sbjct: 249 YSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPE 308
Query: 302 NGSPVYKYDTP----ATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSG- 356
+ + TP +NG L I Q F +N+N SI FY F N++ ++G+ P G
Sbjct: 309 TNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGN 368
Query: 357 --VIMGS------------------NSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWK 396
+GS N+ Y G + T + S GG H K+F W
Sbjct: 369 NTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIH--KRFAWH 426
Query: 397 FATQYSN---SVVSWEARA-----MISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGENGP 448
+ S+ + + RA + Y FTE + + + YYG NKG++ G G
Sbjct: 427 VFGRVSHANKNALGQVGRANEYSLQFNASYAFTESILLNFRITYYGARINKGYQAGYFG- 485
Query: 449 VPK------DFPALYSDRSALYTALVASF 471
PK DF A Y DRS + T L F
Sbjct: 486 APKFNNPDGDFSANYQDRSYMMTNLTLKF 514
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 222 bits (565), Expect = 8e-57
Identities = 158/509 (31%), Positives = 238/509 (46%), Gaps = 59/509 (11%)
Query: 12 AFLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKK 71
+FL ++ F+ + +G V+ S IGFN +IN ++GIYP + F I + +LLPK
Sbjct: 16 SFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKG 75
Query: 72 VSDHVLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQSDDL----AT 127
+H L +GG + +I YD TK + + + + F+GGY + L A
Sbjct: 76 TENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAG 135
Query: 128 QNMKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQ-YK---- 182
+ + + R YV A+L Y YK+ F KAGRY + + + SG QG+++ Q YK
Sbjct: 136 TSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQ 195
Query: 183 KARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVL-YGTHAVQLT 241
+ R W+SSFGR A+ S++ ++FA KGG S+ + YG H + T
Sbjct: 196 RLRFWWWSSFGRGLAFNSWIYEFFATVPYLK-------KGGNPSNSNDFINYGWHGITTT 248
Query: 242 YKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKS 301
Y + FYY +P+ +NAPG K+ +D+N NF GFRS + I+ FP+YY
Sbjct: 249 YSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPE 308
Query: 302 NGSPVYKYDTP----ATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGN----MGN 353
+ + TP +NG L I Q F +N+N SI FY F N++ ++G+ GN
Sbjct: 309 TNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGN 368
Query: 354 PSGVIMG-----------------SNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWK 396
+ I N+ Y G + T + S GG H K+F W
Sbjct: 369 NTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIH--KRFAWH 426
Query: 397 FATQYSN---SVVSWEARA-----MISLGYKFTEYLSGSVDLAYYGVYTNKGFKPGENGP 448
+ S+ + + RA + Y FTE + + + YYG NKG++ G G
Sbjct: 427 VFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFG- 485
Query: 449 VPK------DFPALYSDRSALYTALVASF 471
PK DF A Y DRS + T L F
Sbjct: 486 APKFNNPDGDFSANYQDRSYMMTNLTLKF 514
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 167 bits (424), Expect = 2e-40
Identities = 111/341 (32%), Positives = 166/341 (48%), Gaps = 30/341 (8%)
Query: 18 LQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDHVL 77
L FE +++ V S I FNQ IN ++GIYP + T G L + SLLPK + +H L
Sbjct: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
Query: 78 KGKIGGMVGSIFYDGTKKFEDSSVAYNLFG----YYDGFMGGYTNILQSDDLATQNMKYN 133
+GG +GS+ YD TK D + F YY G GY ++Q T+ K
Sbjct: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGY--LMQHSQNWTREQKA- 134
Query: 134 KNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFG 193
+N R YV + YL+Y YK+ F IK GRY S + SG QGF++ ++KK R+ WFS+FG
Sbjct: 135 QNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRWKKFRIEWFSTFG 194
Query: 194 RAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFY 253
RA A + D++A ++ +K+ YG H + L Y+ + F
Sbjct: 195 RALANEQSIRDFYAP----------------VNYKQKINYGMHNLNLIYENKYIRVAPFI 238
Query: 254 YLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPA 313
+ P+ FNAPG +I D+ + +R T +FP+Y ++ S Y +
Sbjct: 239 WFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL------SKDYYRASLI 291
Query: 314 TQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNP 354
+ +L + QR +Y + YK F N N +G G+P
Sbjct: 292 GKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSP 332
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 164 bits (415), Expect = 2e-39
Identities = 111/341 (32%), Positives = 166/341 (48%), Gaps = 30/341 (8%)
Query: 18 LQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDHVL 77
L FE +++ V S I FNQ IN ++GIYP + T G L + SLLPK + +H L
Sbjct: 6 LSAFEYQVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGIENHKL 65
Query: 78 KGKIGGMVGSIFYDGTKKFEDSSVAYNLFG----YYDGFMGGYTNILQSDDLATQNMKYN 133
+GG +G++ YD TK D + F YY G GY ++Q T+ K
Sbjct: 66 GFGVGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGY--LMQHSQNWTREQKA- 122
Query: 134 KNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFG 193
+N R YV + YL+Y YK+ F IK GRY S + SG QGF+I ++KK ++ WFS+FG
Sbjct: 123 QNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEIFYRWKKFKIVWFSTFG 182
Query: 194 RAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFY 253
RA A ++ D++A ++ +K+ YG H L Y+ I F
Sbjct: 183 RALANEQYIRDFYAP----------------VNYKQKINYGMHNFNLVYENKYIRIAPFI 226
Query: 254 YLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPA 313
+ P+ FNAPG +I D+ + +R T +FP+Y ++ S Y
Sbjct: 227 WFYPKNFNAPGFEITHDTKSYWKSL-WRIQTTFYAWFPLYSDYL------SKDYYRAALV 279
Query: 314 TQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNP 354
+ L + QR + +Y + YK F NA+ +G G+P
Sbjct: 280 GKKSAALFVFQRVNFRSYRFGWSVYKNFGNASVQLGWNGSP 320
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 139 bits (351), Expect = 6e-32
Identities = 133/496 (26%), Positives = 212/496 (41%), Gaps = 78/496 (15%)
Query: 7 VLFFGAFLSSSLQGFEAKLN--GFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLG 64
+LF G FLS LQ ++ ++ G V + GFN + + IYP + ++ G L L
Sbjct: 14 LLFSGLFLSK-LQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLS 72
Query: 65 FSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSV------------AYNLFGYYDGF 112
L L+ ++G M+ ++ YD T ++ +++ +F Y G+
Sbjct: 73 MGLYKG------LRAEVGAMMAALPYDSTA-YQGNNIPNGQPGSRTDPFGAGIFWQYIGW 125
Query: 113 MGGYTNI-LQSDDLATQNMKYNKNVRNYVFSDAYLEYAYKN---YFEIKAGRY-LSTMPY 167
G++ + +Q LA + +A+L Y YK F +K GRY +
Sbjct: 126 YAGHSGLNVQKPRLA-------------MVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 172
Query: 168 KSGQTQGFQISGQYKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSH 227
+ TQG + +YK RL S RA A DWF G Y +
Sbjct: 173 FTSYTQGVEGFVKYKDTRLRVMYSDARASASS----DWFWYF------------GRYYTS 216
Query: 228 GRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAII 287
G+ ++ L Y+ I ++Y Q APG+ I +D+NPNF+ GFR +
Sbjct: 217 GKALMIA----DLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFV 272
Query: 288 GFFPIYYPWMIVKSNGSPVYKY-DTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANG 346
GFFPI+ +N + + + P ++GQ RF N + + YK NANG
Sbjct: 273 GFFPIF----ATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANG 328
Query: 347 WIGNMGNPSGVIMGSNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVV 406
IG G+P G + +NS+Y + D FL G + + F+WK ++++S
Sbjct: 329 DIGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQY--RGFSWKILGRWTDSPR 386
Query: 407 SWEARAMISLGYKFTEY-LSGSVDLAYYGVYTNKGFKPGENG---PVPKDFPA------- 455
+ E + L Y +Y + + L YYG T KG+ G G PV + P
Sbjct: 387 ADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHN 446
Query: 456 LYSDRSALYTALVASF 471
+YSDRS + + F
Sbjct: 447 VYSDRSHIMFNITYGF 462
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 137 bits (345), Expect = 3e-31
Identities = 129/495 (26%), Positives = 208/495 (41%), Gaps = 77/495 (15%)
Query: 8 LFFGAFLSSSLQGFEAKLN--GFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGF 65
L F + S LQ ++ ++ G V + GFN + + IYP + ++ G L L
Sbjct: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
Query: 66 SLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDSSV------------AYNLFGYYDGFM 113
L L+ ++G M+ ++ YD T ++ +++ +F Y G+
Sbjct: 89 GLYKG------LRAEVGAMMAALPYDSTA-YQGNNIPNGQPGSRTDPFGAGIFWQYIGWY 141
Query: 114 GGYTNI-LQSDDLATQNMKYNKNVRNYVFSDAYLEYAYKN---YFEIKAGRY-LSTMPYK 168
G++ + +Q LA + +A+L Y YK F +K GRY +
Sbjct: 142 AGHSGLQVQKPRLA-------------MVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWF 188
Query: 169 SGQTQGFQISGQYKKARLTWFSSFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHG 228
+ TQG + +YK R S RA A DWF G Y + G
Sbjct: 189 TSYTQGVEGFVKYKDTRFRVMYSDARASASS----DWFWYF------------GRYYTSG 232
Query: 229 RKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIG 288
+ ++ L Y+ I ++Y Q APG+ I +D+NPNF+ GFR +G
Sbjct: 233 KALM----VADLKYEKDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVG 288
Query: 289 FFPIYYPWMIVKSNGSPVYKY-DTPATQNGQNLIILQRFDINNYNVSIAFYKVFQNANGW 347
FFPI+ +N + + + P ++GQ RF N + + YK NANG
Sbjct: 289 FFPIF----ATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGD 344
Query: 348 IGNMGNPSGVIMGSNSVYAGFTGTALKRDAATIFLSCGGTHFAKKFTWKFATQYSNSVVS 407
IG G+P G + +NS+Y + D FL G + + F+WK ++++S +
Sbjct: 345 IGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQY--RGFSWKILGRWTDSPRA 402
Query: 408 WEARAMISLGYKFTEY-LSGSVDLAYYGVYTNKGFKPGENG---PVPKDFPA-------L 456
E + L Y +Y + + L YYG T KG+ G G PV + P +
Sbjct: 403 DERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNV 462
Query: 457 YSDRSALYTALVASF 471
YSDRS + + F
Sbjct: 463 YSDRSHIMFNIAYGF 477
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 116 bits (291), Expect = 5e-25
Identities = 120/478 (25%), Positives = 202/478 (42%), Gaps = 69/478 (14%)
Query: 13 FLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKV 72
F + SL +++G + +GFN IN +GIYP + F + G L +
Sbjct: 22 FTTGSLGAVTYEVHGDFINFAKVGFNHSPINPVKGIYPTETFVNLTGKL---------EG 72
Query: 73 SDHVLKG---KIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGF----------------- 112
S H+ +G +GG++G YDGTK ++ + + Y+D
Sbjct: 73 SVHLGRGWTVNLGGVLGGQAYDGTK-YDRWAKDFTPPSYWDKTSCGTDSMSLCMNATKMW 131
Query: 113 -MGGYTNILQSDDLATQNM-KYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSG 170
G ++ + + M ++N NY ++AYL + Y KA + Y S
Sbjct: 132 QQSGPGGVINPRGIGWEYMGEWNGLFPNYYPANAYLPGGSRRYQVYKAN-----LTYDSD 186
Query: 171 QTQGFQISGQY---KKARLTWFSSFGRAFAYGSFLMDWFAARTTYSG-GFTKNDKGGYDS 226
+ + G++ ++ ++ W + F YG+F + +SG G D
Sbjct: 187 RVH--MVMGRFDITEQEQMDWIYQLFQGF-YGTFKLTKNMKFLLFSGWGRGIADGQWLFP 243
Query: 227 HGRKVLYGTHAVQLTYKPHR-FLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTA 285
R+ +G H + Y+P + +I + YL P + PG KI +D+NP FSG G R+ T
Sbjct: 244 IYREKPWGVHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTT 303
Query: 286 IIGFFPIY-YPWMIVKSNGSPVYKYDT--PATQNGQ----------NLIILQRFDINNYN 332
F+ +Y Y W + +Y+T P NG+ L++ DINNY
Sbjct: 304 ---FYALYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYF 360
Query: 333 VSIAFYKVFQNANGWIGNMGNP---SGVIMGSNSVYA-GFTG--TALKRDAATIFLSCGG 386
V Y N N +G GNP G+ S+Y+ GF G DA T ++ GG
Sbjct: 361 VVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGSIYSLGFAGIDNITDADAFTEYVKGGG 420
Query: 387 THFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPG 444
H KF+W +++ + + E + L Y+F++++ + L + G+ PG
Sbjct: 421 KH--GKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPG 476
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 112 bits (280), Expect = 9e-24
Identities = 123/477 (25%), Positives = 199/477 (40%), Gaps = 67/477 (14%)
Query: 13 FLSSSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKV 72
F + SL +++G S +GFN+ IN +GIYP + F + G L +
Sbjct: 22 FTTGSLGAVTYEVHGDFINFSKVGFNRSPINPVKGIYPTETFVNLTGKL---------EG 72
Query: 73 SDHVLKG---KIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQSDDLATQN 129
S H+ +G +GG++G YD T+ ++ + + Y+D G T+ L AT+
Sbjct: 73 SVHLGRGWTVNVGGVLGGQVYDNTR-YDRWAKDFTPPSYWDKTSCG-TDSLSLCMNATK- 129
Query: 130 MKYNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWF 189
+ + + + Y Y + Y Y G ++ +++ KA LT+
Sbjct: 130 -MWQQQGPGGIIDPRGIGYMYMGEWNGLFPNYYPANAYLPGHSRRYEVY----KANLTYD 184
Query: 190 SS-----FGRAFAYGSFLMDW-FAARTTYSGGF--TKNDKGG-YDSHGRKVL-------- 232
S GR MDW + + G F TKN K + S GR +
Sbjct: 185 SDRVHMVMGRFDVTEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQWLFPI 244
Query: 233 -----YGTHAVQLTYKPHR-FLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAI 286
+G H + Y+P + +I + YL P + PG KI +D+NP FSG G R+ T
Sbjct: 245 YREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNKTT- 303
Query: 287 IGFFPIY-YPWMIVKSNGSPVYKYDT--PATQNGQ----------NLIILQRFDINNYNV 333
F+ +Y Y W + +Y+T P NG+ L + DINNY V
Sbjct: 304 --FYVLYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLYLHHHIDINNYFV 361
Query: 334 SIAFYKVFQNANGWIGNMGNP---SGVIMGSNSVYA-GFTG--TALKRDAATIFLSCGGT 387
Y N N +G GNP G+ +Y+ GF G DA T ++ GG
Sbjct: 362 VGGAYLNIGNPNMNLGTWGNPVALDGIEQWVGGIYSLGFAGIDNITDADAFTEYVKGGGK 421
Query: 388 HFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVYTNKGFKPG 444
H KF+W +++ + + E + L Y+F++++ + L + G+ PG
Sbjct: 422 H--GKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPG 476
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,996,726
Number of Sequences: 1026957
Number of extensions: 15496330
Number of successful extensions: 27254
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27169
Number of HSP's gapped (non-prelim): 16
length of query: 471
length of database: 324,149,939
effective HSP length: 125
effective length of query: 346
effective length of database: 195,780,314
effective search space: 67739988644
effective search space used: 67739988644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)