BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645787|ref|NP_207964.1| hypothetical protein
[Helicobacter pylori 26695]
         (183 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207964.1|  (NC_000915) hypothetical protein [Helicoba...   370  e-102
gb|AAD09306.1|  (AF002192) unknown [Helicobacter pylori]          363  e-100
ref|NP_223817.1|  (NC_000921) putative [Helicobacter pylori ...   343  4e-94

>ref|NP_207964.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64666 hypothetical protein HP1173 - Helicobacter pylori (strain 26695)
 gb|AAD08225.1| (AE000623) H. pylori predicted coding region HP1173 [Helicobacter
           pylori 26695]
          Length = 183

 Score =  370 bits (949), Expect = e-102
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MSYFYKHCLKFSLVGLLGLLSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR 60
           MSYFYKHCLKFSLVGLLGLLSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR
Sbjct: 1   MSYFYKHCLKFSLVGLLGLLSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR 60

Query: 61  DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK 120
           DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK
Sbjct: 61  DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK 120

Query: 121 EFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK 180
           EFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK
Sbjct: 121 EFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK 180

Query: 181 PIY 183
           PIY
Sbjct: 181 PIY 183



>gb|AAD09306.1| (AF002192) unknown [Helicobacter pylori]
          Length = 183

 Score =  363 bits (931), Expect = e-100
 Identities = 178/183 (97%), Positives = 181/183 (98%)

Query: 1   MSYFYKHCLKFSLVGLLGLLSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR 60
           MSYFYK CLKFSLVGLLGLLSVQLDARSF+DGDLDIQKFSYEDSLLKKGDPNGVHKVQVR
Sbjct: 1   MSYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR 60

Query: 61  DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK 120
           DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK
Sbjct: 61  DYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSK 120

Query: 121 EFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK 180
           EFPKQSREKKGRV+TLIGK EVPYLILETDCQVGDIAKISL+GNFDGTGFLTEYKFKDAK
Sbjct: 121 EFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKISLIGNFDGTGFLTEYKFKDAK 180

Query: 181 PIY 183
           PIY
Sbjct: 181 PIY 183



>ref|NP_223817.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71849 hypothetical protein jhp1100 - Helicobacter pylori (strain J99)
 gb|AAD06673.1| (AE001537) putative [Helicobacter pylori J99]
          Length = 185

 Score =  343 bits (881), Expect = 4e-94
 Identities = 171/185 (92%), Positives = 179/185 (96%), Gaps = 2/185 (1%)

Query: 1   MSYFYKHCLKFSLVGLLGL--LSVQLDARSFVDGDLDIQKFSYEDSLLKKGDPNGVHKVQ 58
           M++FYK CL+FSLVGLLG+  LSVQLDARSF+DGDLDIQKFSYEDSLLKKGDPNGVHKVQ
Sbjct: 1   MNHFYKRCLRFSLVGLLGVGFLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQ 60

Query: 59  VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLD 118
           VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTG+NTT LD
Sbjct: 61  VRDYKGKMQEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGNNTTSLD 120

Query: 119 SKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKD 178
           SKEFPKQSREKKG+VITLIG+ EVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFK 
Sbjct: 121 SKEFPKQSREKKGQVITLIGQNEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKG 180

Query: 179 AKPIY 183
           AKPIY
Sbjct: 181 AKPIY 185



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,312,860
Number of Sequences: 1026957
Number of extensions: 4883316
Number of successful extensions: 9289
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9285
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 93 (40.4 bits)