BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645802|ref|NP_207979.1| hypothetical protein
[Helicobacter pylori 26695]
(269 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207979.1| (NC_000915) hypothetical protein [Helicoba... 537 e-152
ref|NP_206920.1| (NC_000915) hypothetical protein [Helicoba... 435 e-121
ref|NP_207978.1| (NC_000915) hypothetical protein [Helicoba... 398 e-110
ref|NP_222831.1| (NC_000921) putative [Helicobacter pylori ... 395 e-109
ref|NP_206918.1| (NC_000915) hypothetical protein [Helicoba... 389 e-107
ref|NP_206919.1| (NC_000915) hypothetical protein [Helicoba... 278 4e-74
ref|NP_223830.1| (NC_000921) putative [Helicobacter pylori ... 273 1e-72
ref|NP_013412.1| (NC_001144) Product of gene unknown; Imh1p... 49 4e-05
gb|AAF73785.1|AF154017_1 (AF154017) surface protein PspC [S... 49 7e-05
gb|AAF13458.1| (AF068648) unknown [Streptococcus pneumoniae] 48 1e-04
gb|AAF73776.1|AF154009_1 (AF154009) surface protein PspC [S... 48 1e-04
gb|AAF73777.1|AF154010_1 (AF154010) surface protein PspC [S... 46 4e-04
gb|AAL92290.1| (AC115593) hypothetical protein [Dictyosteli... 46 5e-04
gb|AAF73798.1|AF154029_1 (AF154029) surface protein PspC [S... 45 8e-04
gb|AAF73807.1|AF154035_1 (AF154035) surface protein PspC [S... 45 0.001
gb|AAF73792.1|AF154023_1 (AF154023) surface protein PspC [S... 44 0.001
ref|XP_109181.1| (XM_109181) RAD50 homolog (S. cerevisiae) ... 44 0.002
ref|NP_071582.1| (NM_022246) RAD50 homolog (S. cerevisiae) ... 44 0.002
gb|AAF73786.1|AF154018_1 (AF154018) surface protein PspC [S... 44 0.002
ref|NP_033038.1| (NM_009012) RAD50 homolog (S. cerevisiae) ... 44 0.002
gb|AAF73811.1|AF154039_1 (AF154039) surface protein PspC [S... 44 0.002
gb|AAF13459.1| (AF068649) unknown [Streptococcus pneumoniae] 43 0.003
gb|AAF73812.1|AF154040_1 (AF154040) surface protein PspC [S... 43 0.003
gb|AAF73778.1|AF154011_1 (AF154011) surface protein PspC [S... 43 0.004
gb|AAF73810.1|AF154038_1 (AF154038) surface protein PspC [S... 43 0.004
ref|NP_346601.1| (NC_003028) choline binding protein A [Str... 43 0.004
gb|AAF73796.1|AF154027_1 (AF154027) surface protein PspC [S... 42 0.005
gb|AAF73813.1|AF154041_1 (AF154041) surface protein PspC [S... 42 0.005
ref|NP_326339.1| (NC_002771) LIPOPROTEIN [Mycoplasma pulmon... 42 0.005
ref|NP_509610.1| (NM_077209) F49E2.5e.p [Caenorhabditis ele... 42 0.007
ref|NP_509605.1| (NM_077204) F49E2.5a.p [Caenorhabditis ele... 42 0.007
gb|AAF73799.1|AF154030_1 (AF154030) surface protein PspC [S... 42 0.007
ref|NP_509606.1| (NM_077205) F49E2.5d.p [Caenorhabditis ele... 42 0.007
ref|NP_509609.1| (NM_077208) F49E2.5f.p [Caenorhabditis ele... 42 0.007
gb|AAF51535.2| (AE003590) spen gene product [alt 1] [Drosop... 42 0.009
gb|AAA67447.1| (U22017) P120 [Mycoplasma hominis] 42 0.009
gb|AAF34661.1|AF221715_1 (AF221715) split ends long isoform... 42 0.009
ref|NP_034389.1| (NM_010259) guanylate nucleotide binding p... 42 0.009
gb|AAF73780.1|AF154013_1 (AF154013) surface protein PspC [S... 42 0.009
gb|AAF73784.1|AF154016_1 (AF154016) surface protein PspC [S... 42 0.009
gb|AAF26299.1|AF184612_1 (AF184612) split ends [Drosophila ... 42 0.009
ref|NP_524718.1| (NM_079979) split ends; polycephalon; yipp... 42 0.009
ref|XP_124199.1| (XM_124199) similar to Interferon-induced ... 42 0.009
gb|AAF73797.1|AF154028_1 (AF154028) surface protein PspC [S... 42 0.009
gb|AAF51534.2| (AE003590) spen gene product [alt 2] [Drosop... 42 0.009
>ref|NP_207979.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64668 hypothetical protein HP1188 - Helicobacter pylori (strain 26695)
gb|AAD08234.1| (AE000624) H. pylori predicted coding region HP1188 [Helicobacter
pylori 26695]
Length = 269
Score = 537 bits (1384), Expect = e-152
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MKRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTI 60
MKRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTI
Sbjct: 1 MKRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTI 60
Query: 61 ATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAE 120
ATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAE
Sbjct: 61 ATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAE 120
Query: 121 QNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 180
QNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK
Sbjct: 121 QNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 180
Query: 181 AQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSK 240
AQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSK
Sbjct: 181 AQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSK 240
Query: 241 AQAKMLGNEKPTSPPFNLSKPFVRSKNIC 269
AQAKMLGNEKPTSPPFNLSKPFVRSKNIC
Sbjct: 241 AQAKMLGNEKPTSPPFNLSKPFVRSKNIC 269
>ref|NP_206920.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64534 hypothetical protein HP0120 - Helicobacter pylori (strain 26695)
gb|AAD07196.1| (AE000534) H. pylori predicted coding region HP0120 [Helicobacter
pylori 26695]
Length = 398
Score = 435 bits (1118), Expect = e-121
Identities = 227/294 (77%), Positives = 234/294 (79%), Gaps = 49/294 (16%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
KRVR LVKKHP+KSS ALVVLTH ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA
Sbjct: 51 KRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 110
Query: 62 TSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKT------------- 108
SLLLAACS GD DKQIELEQEKKEAENARDRANKSGIELEQE+QKT
Sbjct: 111 ASLLLAACSAGDTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIK 170
Query: 109 ------------------------------------IKEQKDLVKKAEQNCQENHGQFFM 132
IKEQKD +K+ EQNCQENH QFF+
Sbjct: 171 AEQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFI 230
Query: 133 KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKEL 192
KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQE IAYLQKEL
Sbjct: 231 KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKEL 290
Query: 193 ESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 246
E LPYSQKAIAKQVNFY+PSS+AYLELDPRDFKVTEEWQKENLKIRSKAQAKML
Sbjct: 291 EFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 344
>ref|NP_207978.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64668 hypothetical protein HP1187 - Helicobacter pylori (strain 26695)
gb|AAD08233.1| (AE000624) H. pylori predicted coding region HP1187 [Helicobacter
pylori 26695]
Length = 385
Score = 398 bits (1022), Expect = e-110
Identities = 208/281 (74%), Positives = 222/281 (78%), Gaps = 36/281 (12%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
K+VR LVKKHP+KSS ALVVLTH ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA
Sbjct: 51 KKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 110
Query: 62 TSLLLAACSVGDIDKQIELEQEKKEAEN---------ARDRANKSGIE------------ 100
TSLLLAACS GD+ +QIELEQEK++ N +++ S IE
Sbjct: 111 TSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQ 170
Query: 101 ---------------LEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEV 145
EQEKQKTIK QKD +K EQNCQENH QFF++K GIK GI IEV
Sbjct: 171 KTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEV 230
Query: 146 EAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQ 205
EAECKTPKPAKTNQTPIQPKHLPNSKQP SQRGSKAQELIAYLQKELESLPYSQKAIAKQ
Sbjct: 231 EAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQ 290
Query: 206 VNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 246
V+FYRPSS+AYLELDPRDF VTEEWQKENLKIRSKAQAKML
Sbjct: 291 VDFYRPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKML 331
>ref|NP_222831.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71972 hypothetical protein jhp0110 - Helicobacter pylori (strain J99)
gb|AAD05689.1| (AE001450) putative [Helicobacter pylori J99]
Length = 412
Score = 395 bits (1015), Expect = e-109
Identities = 214/317 (67%), Positives = 229/317 (71%), Gaps = 67/317 (21%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
K+VRELVKKHP+KSSVALVVLTH ACK+AKELDDKVQDKSKQAEKENQINWWKYSGLTIA
Sbjct: 51 KKVRELVKKHPKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 110
Query: 62 TSLLLAACSVGDIDKQIE--------------LEQEKKEAENARDRANKSGIELEQEKQK 107
SLLLAACS GDIDKQIE LEQE+++ E R + NKS IELEQE+QK
Sbjct: 111 ASLLLAACSTGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQK 170
Query: 108 T-------------------------------------------------IKEQKDLVKK 118
T IKEQKD +K+
Sbjct: 171 TNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKE 230
Query: 119 AEQNCQENHGQFFMKKL----GIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH 174
EQNCQE HGQ F+KK GI GIAIE+EAECKTPKPAKTNQTPIQPKHLPNSKQP
Sbjct: 231 TEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPR 290
Query: 175 SQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKEN 234
SQRGSKAQELIAYLQKELESLPYSQKAIAKQV+FY+PSS+AYLELDPRDFKVTEEWQKEN
Sbjct: 291 SQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKEN 350
Query: 235 LKIRSKAQAKMLGNEKP 251
LKIRSKAQAKML P
Sbjct: 351 LKIRSKAQAKMLEMRNP 367
>ref|NP_206918.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64534 hypothetical protein HP0118 - Helicobacter pylori (strain 26695)
gb|AAD07189.1| (AE000533) H. pylori predicted coding region HP0118 [Helicobacter
pylori 26695]
Length = 395
Score = 389 bits (999), Expect = e-107
Identities = 210/300 (70%), Positives = 227/300 (75%), Gaps = 50/300 (16%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
K+VR LVKKHP+KSS ALVVLTH ACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA
Sbjct: 51 KKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 110
Query: 62 TSLLLAACSVGDIDKQIELEQEKKEAENA---------RDRANKSGIE------LEQEKQ 106
TSLLLAACS GD+ +QIELEQEK++ N +++ S IE +EQE+Q
Sbjct: 111 TSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQ 170
Query: 107 KT---------------------IKEQKDLVKK--------------AEQNCQENHGQFF 131
KT +KEQKDLVK+ EQNCQENH QFF
Sbjct: 171 KTSNTQKDLVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKTQKDFIKYVEQNCQENHNQFF 230
Query: 132 MKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKE 191
++K GIK GI IEVEAECKTPKPAKTNQTPIQPKHLPNSKQP SQRGSKAQELIAYLQKE
Sbjct: 231 IEKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKE 290
Query: 192 LESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLGNEKP 251
LE LPYSQKAIAKQV+FYRPSS+AYLELDPRDFKVTEEWQKENLKIRSKAQAKML P
Sbjct: 291 LEFLPYSQKAIAKQVDFYRPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRNP 350
>ref|NP_206919.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64534 hypothetical protein HP0119 - Helicobacter pylori (strain 26695)
gb|AAD07190.1| (AE000533) H. pylori predicted coding region HP0119 [Helicobacter
pylori 26695]
Length = 461
Score = 278 bits (711), Expect = 4e-74
Identities = 150/237 (63%), Positives = 172/237 (72%), Gaps = 22/237 (9%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
+K ++ K + + ++ E+E Q K S + + + ++ + EQEK++
Sbjct: 175 QKTEQEKQKTEQEKQKTEQEKQ----KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
Query: 88 ENARDRANK-----SGIEL-------------EQEKQKTIKEQKDLVKKAEQNCQENHGQ 129
E + + + S IE EQEKQKT QKDLVK AEQNCQENH Q
Sbjct: 231 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ 290
Query: 130 FFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQ 189
FF+KKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQE IAYLQ
Sbjct: 291 FFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQ 350
Query: 190 KELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 246
KELE LPYSQKAIAKQVNFY+PSS+AYLELDPRDFKVTEEWQKENLKIRSKAQAKML
Sbjct: 351 KELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 407
Score = 69.7 bits (169), Expect = 3e-11
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 4 VRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYS-GLTIAT 62
+++ +KK +KS+ C K DD + K + +W+ + G+T T
Sbjct: 43 IKDSIKKQIKKSNWI--------CGNVKTADDYL--------KTHPNSWFNSAIGVTTIT 86
Query: 63 SLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQN 122
++L+ C D K+ E+ + +KEAENARDRANKSGIELEQE+QKT +E+ +K EQ
Sbjct: 87 AMLMNVCFADDQSKK-EVAETQKEAENARDRANKSGIELEQEQQKTEQEK----QKTEQE 141
Query: 123 CQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQ 182
Q+ Q K I+ I+VE + + + K +T + + KQ Q K
Sbjct: 142 KQKTE-QEKQKTSNIETNNQIKVEQKQQKTEQEK-QKTEQEKQKTEQEKQKTEQEKQKTS 199
Query: 183 ELIAYLQKELE 193
+ Q ++E
Sbjct: 200 NIETNNQIKVE 210
>ref|NP_223830.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71847 hypothetical protein jhp1113 - Helicobacter pylori (strain J99)
gb|AAD06694.1| (AE001539) putative [Helicobacter pylori J99]
Length = 383
Score = 273 bits (699), Expect = 1e-72
Identities = 137/170 (80%), Positives = 146/170 (85%), Gaps = 4/170 (2%)
Query: 81 EQEKKEAENARD----RANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLG 136
EQEK++ N + + + EQEKQKT QKDLV KAEQNCQENH QFF+KKLG
Sbjct: 160 EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLG 219
Query: 137 IKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP 196
IK GIAIE+EAECKTPKP KTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP
Sbjct: 220 IKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLP 279
Query: 197 YSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 246
YSQKAIAKQV+FYRPSS+AYLELDPRDF TEEWQKENLKIRSKAQAKML
Sbjct: 280 YSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKML 329
>ref|NP_013412.1| (NC_001144) Product of gene unknown; Imh1p [Saccharomyces
cerevisiae]
pir||S51441 hypothetical protein YLR309c - yeast (Saccharomyces cerevisiae)
gb|AAB67359.1| (U17247) Imh1p [Saccharomyces cerevisiae]
Length = 911
Score = 49.3 bits (116), Expect = 4e-05
Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 43/240 (17%)
Query: 25 AACKKAKELDDKVQDKS-KQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQE 83
A K AKEL++ +KS K+ E T+ T L ID + L+++
Sbjct: 351 AELKDAKELENSQLEKSAKELE-------------TLNTEL---------IDTKKSLKEK 388
Query: 84 KKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAI 143
E E RD G EL K + IKE ++QN + + + L K I
Sbjct: 389 NSELEEVRDMLRTVGNELVDAKDE-IKESS-----SKQNEEVKTVKLELDDLRHKNATMI 442
Query: 144 EVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIA 203
E T +K + +HL N + + +Q +A L +E+ L Y + I
Sbjct: 443 EAYEAKNTELRSKIELLSKKVEHLKNLCTEKEKEQTTSQNKVAKLNEEISQLTYEKSNIT 502
Query: 204 KQVNFYRPS------SVAYLELDPRDF--------KVTEEWQKENLKIRSKAQAKMLGNE 249
K++ R S +V+YLE + F K TE+ +K++ KI ++ NE
Sbjct: 503 KELTSLRTSYKQKEKTVSYLEEQVKQFSEQKDVAEKSTEQLRKDHAKISNRLDLLKKENE 562
>gb|AAF73785.1|AF154017_1 (AF154017) surface protein PspC [Streptococcus pneumoniae]
Length = 699
Score = 48.5 bits (114), Expect = 7e-05
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 19/232 (8%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E KV++ K+A+ + + ++ Y +T T L A S + K+ ELE KKEA
Sbjct: 141 KKVAEAKKKVEEAEKKAKAQKEEDYRNYPTITYKTLELEIAESDVKV-KEAELELVKKEA 199
Query: 88 ENARDRAN----KSGIELEQEKQKTIKEQKDLVKKAEQNCQ-----ENHGQFFMKKLGIK 138
+ +R+ K+ +E EQ + +K+ K +KAE+ + + + +K +K
Sbjct: 200 DESRNEGTINQAKAKVESEQAEATRLKKIKTDREKAEEEAKRRADAKEQDESKRRKSRVK 259
Query: 139 GGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYS 198
G E K AK++ + + + LP+ P + G K +A +K++E
Sbjct: 260 RGDLGEPATPDKKDNDAKSSDSSVGEETLPS---PSLKPGKK----VADAEKKVEEAEKK 312
Query: 199 QKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLGNEK 250
K K+ + ++ Y L+ + E +K L++ K +AK NE+
Sbjct: 313 AKD-QKEEDHRNYPTITYKTLELEIAESDVEVKKAELEL-VKEEAKGSRNEE 362
Score = 43.1 bits (100), Expect = 0.003
Identities = 40/167 (23%), Positives = 75/167 (43%), Gaps = 7/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK + + KV++ K+A+ + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 297 KKVADAEKKVEEAEKKAKDQKEEDHRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 355
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ +R+ + E E +K + + +K + +E K+ + E A
Sbjct: 356 KGSRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 410
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 411 EQPQPAPAPQPEKPAPAPKPENPAEQPKAEKRADQQAEEDYARRSEE 457
>gb|AAF13458.1| (AF068648) unknown [Streptococcus pneumoniae]
Length = 487
Score = 48.1 bits (113), Expect = 1e-04
Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 26/241 (10%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 140 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 198
Query: 88 ENARDRAN----KSGIELEQ------EKQKTIKEQKDL-----VKKAEQNCQENHGQFFM 132
+ +R+ K+ +E +Q +K KT +EQ + +K + +E +
Sbjct: 199 KGSRNEQKVNQAKAKVESKQAEATRLKKIKTDREQAETTRLENIKTDREKAEEAKRKADA 258
Query: 133 K-----KLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAY 187
K K +KGG+ E K AK++ + + + LP+ ++ ++A++ +A
Sbjct: 259 KEQDESKRRVKGGVPGEQATLDKKENDAKSSDSSVGEETLPSPSLKSGKKVAEAEKKVAE 318
Query: 188 LQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPR----DFKVTEEWQKENLKIRSKAQA 243
+K+ + + N Y+ + E D + + ++ +E KE+ QA
Sbjct: 319 AEKKAKDQKEEDRR-NYPTNTYKTLELEIAESDVKVKEAELELVKEEAKESRNEEKVKQA 377
Query: 244 K 244
K
Sbjct: 378 K 378
>gb|AAF73776.1|AF154009_1 (AF154009) surface protein PspC [Streptococcus pneumoniae]
Length = 695
Score = 47.8 bits (112), Expect = 1e-04
Identities = 54/232 (23%), Positives = 106/232 (45%), Gaps = 19/232 (8%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 137 KKVAEAEKKVEEAKKKAEDQKEKDLRNYPTNTYKTLELDIAESDVEV-KKAELELVKEEA 195
Query: 88 ENARDRAN----KSGIELEQEKQKTIKEQKDLVKKAEQNCQ-----ENHGQFFMKKLGIK 138
+ +RD K+ +E EQ + +K+ K +KAE+ + + + +K +K
Sbjct: 196 KESRDEKKINQAKAKVESEQAEATRLKKIKTDREKAEEEAKRRADAKEQDESKRRKSRVK 255
Query: 139 GGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYS 198
G E K AK++ + + + LP+ ++ ++A++ + +K+ +
Sbjct: 256 RGDLGEPATPDKKENDAKSSDSGVGEETLPSPSLKPGKKVAEAEKKVEEAEKKAKD---- 311
Query: 199 QKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLGNEK 250
K+ + ++ Y L+ + E +K L++ K +AK NE+
Sbjct: 312 ----QKEEDHRNYPTITYKTLELEIAESDVEVKKAELEL-VKEEAKGSRNEE 358
Score = 44.7 bits (104), Expect = 0.001
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 293 KKVAEAEKKVEEAEKKAKDQKEEDHRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 351
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ +R+ + E E +K + + +K + +E K+ + E A
Sbjct: 352 KGSRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 406
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 407 EQPQPAPAPQPEKPAPAPKPEKPAEQPKAEKPADQQAEEDYARRSEE 453
>gb|AAF73777.1|AF154010_1 (AF154010) surface protein PspC [Streptococcus pneumoniae]
Length = 655
Score = 46.2 bits (108), Expect = 4e-04
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 16/229 (6%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E KV++ K+AE + + ++ Y T T L A S + K+ ELE K+EA
Sbjct: 141 KKVAEAQKKVEEAKKKAEDQKEEDFRNYPTNTYKTIELEIAESDVKV-KEAELELLKEEA 199
Query: 88 ENARDRANKSGIELEQEKQKT----IKEQKDLVKKAEQNCQE--NHGQFFMKKLGIKGGI 141
+ RD +E + + +K ++E K KKAE+ + + + K K G+
Sbjct: 200 KEHRDEGTIKQVEEKVKSEKAEATRLEEIKTERKKAEEEAKRRADAKEQGKPKGRAKRGV 259
Query: 142 AIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKA 201
E K AK++ + + + LPN ++ ++AQ+ + +K+ +
Sbjct: 260 PGEQATPDKKENDAKSSDSSVGEETLPNPSLKPEKKVAEAQKKVEEAKKKAKD------- 312
Query: 202 IAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLGNEK 250
K+ + ++ Y L+ + E +K L++ K +AK NE+
Sbjct: 313 -QKEEDHRNYPTITYKTLELEIAESDVEVKKAELEL-VKEEAKGSRNEE 359
Score = 43.1 bits (100), Expect = 0.003
Identities = 41/167 (24%), Positives = 74/167 (43%), Gaps = 8/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E KV++ K+A+ + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 294 KKVAEAQKKVEEAKKKAKDQKEEDHRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 352
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ +R+ + E E +K + + +K + +E K+ + E A
Sbjct: 353 KGSRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEE------AKRKAAEEDKVKEKPA 406
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 407 EQPQPAPAPQPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEE 453
>gb|AAL92290.1| (AC115593) hypothetical protein [Dictyostelium discoideum]
Length = 393
Score = 45.8 bits (107), Expect = 5e-04
Identities = 50/196 (25%), Positives = 95/196 (47%), Gaps = 21/196 (10%)
Query: 2 KRVRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIA 61
KR ++ V++ E+ + KK K + +K +++ ++ E+E ++ + S T
Sbjct: 196 KRKQQEVEEEEEEEEEKVEEKPKKVIKKQK-VSNKTEEQKEKVEEEEKVEEEEQSETTTT 254
Query: 62 TSL---LLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIK-EQKDLVK 117
T ++ S DI KQI EQEKK AN+ ++ QEK+KT + + K++ K
Sbjct: 255 TQKKKKFISNDSTIDIMKQISEEQEKK--------ANQ---KITQEKKKTQQLQSKEVEK 303
Query: 118 KAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQT---PIQPKHLPNSKQPH 174
+ ++ + +KKL KG E E E + P AKT T + K +QP
Sbjct: 304 QTKKKNVVEKKKTILKKL--KGEEEQEQEKEEEKPVVAKTTTTTKKSVSKKPKTQVEQPS 361
Query: 175 SQRGSKAQELIAYLQK 190
++ + +++ +++ +K
Sbjct: 362 EEQTTPSKKSVSFGEK 377
>gb|AAF73798.1|AF154029_1 (AF154029) surface protein PspC [Streptococcus pneumoniae]
Length = 752
Score = 45.1 bits (105), Expect = 8e-04
Identities = 38/153 (24%), Positives = 68/153 (43%), Gaps = 2/153 (1%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 312 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 370
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E + ++ +K A E
Sbjct: 371 KEPRNEEKVKQAQAEVESKKAEATRLEKIKTDRKKTEEEAKRKAAEEDKVKEKPA-EQPQ 429
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 180
P+P K P P P +++P Q+ +
Sbjct: 430 PAPAPQPEKPAPKPENPAEQPKAEKPADQQAEE 462
>gb|AAF73807.1|AF154035_1 (AF154035) surface protein PspC [Streptococcus pneumoniae]
Length = 693
Score = 44.7 bits (104), Expect = 0.001
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 331 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 389
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E K+ + E A
Sbjct: 390 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 444
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 445 EQPQPAPAPKAEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEE 491
>gb|AAF73792.1|AF154023_1 (AF154023) surface protein PspC [Streptococcus pneumoniae]
Length = 695
Score = 44.3 bits (103), Expect = 0.001
Identities = 38/153 (24%), Positives = 67/153 (42%), Gaps = 2/153 (1%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV + K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 335 KKVAEAEKKVAEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KEAELELVKEEA 393
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E + ++ +K A E
Sbjct: 394 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPA-EQPQ 452
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 180
P+P K P P P +++P Q+ +
Sbjct: 453 PAPAPQPEKPAPKPENPAEQPKAEKPADQQAEE 485
>ref|XP_109181.1| (XM_109181) RAD50 homolog (S. cerevisiae) [Mus musculus]
ref|XP_122252.1| (XM_122252) similar to RAD50 homolog (S. cerevisiae) [Mus musculus]
Length = 1312
Score = 43.9 bits (102), Expect = 0.002
Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 26/271 (9%)
Query: 1 MKRVRELVKKHPEK----SSVALVVLTHAACKKAKELDDKVQDKS---KQAEKENQINWW 53
+K ELVK+ E+ +S L LT K ++LD+ KS + E + +I
Sbjct: 393 IKNFHELVKERQEREAKTASQLLSDLTDKEALKQRQLDELRDRKSGLGRTIELKTEILTK 452
Query: 54 KYSGLTIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANK-SGIE-LEQEKQKTIKE 111
K S L S L G D+ +EL+QE +AE +A K S IE L+ E E
Sbjct: 453 KQSELRHVRSELQQL--EGSSDRILELDQELTKAERELSKAEKNSSIETLKAEVMSLQNE 510
Query: 112 QKDL---VKKAEQNCQE-NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHL 167
+ DL ++K +Q ++ NH ++ + + + + + K +++ +
Sbjct: 511 KADLDRSLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSDELTSLLGYF 570
Query: 168 PNSKQPHSQRGSKAQEL------IAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLE--- 218
PN KQ SK++E+ +A L KEL S ++ I ++ +Y +
Sbjct: 571 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASAEQNKNHINNELKKKEEQLSSYEDKLF 630
Query: 219 --LDPRDFKVTEEWQKENLKIRSKAQAKMLG 247
+D + KE ++ SK +A + G
Sbjct: 631 DVCGSQDLESDLGRLKEEIEKSSKQRAMLAG 661
>ref|NP_071582.1| (NM_022246) RAD50 homolog (S. cerevisiae) [Rattus norvegicus]
gb|AAF91229.1|AF218576_1 (AF218576) Rad50 [Rattus norvegicus]
Length = 1312
Score = 43.9 bits (102), Expect = 0.002
Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 22/264 (8%)
Query: 4 VRELVKKHPEKSSVALVVLTHAACKKAKELDDKVQDKS---KQAEKENQINWWKYSGLTI 60
VRE ++ + +S L LT K +++D+ KS + E + +I K + L
Sbjct: 400 VRERQEREAKTASQLLSDLTDKEALKQRQMDEMRDKKSGLGRMIELKTEILTKKQTELRN 459
Query: 61 ATSLLLAACSVGDIDKQIELEQEKKEAENARDRANK-SGIE-LEQEKQKTIKEQKDL--- 115
+ L G D+ +EL+QE +AE +A K S IE L+ E E+ DL
Sbjct: 460 VRNELQQL--EGSSDRILELDQELTKAERELSKAEKNSSIETLKAEILNLQSEKADLDRN 517
Query: 116 VKKAEQNCQE-NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH 174
++K +Q ++ NH ++ + + + + + K +++ + PN KQ
Sbjct: 518 LRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSDELTSLLGYFPNKKQLE 577
Query: 175 SQRGSKAQEL------IAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLE-----LDPRD 223
SK++E+ +A L KEL S ++ I ++ +Y + +D
Sbjct: 578 DWLHSKSKEINQTRDRLAKLNKELASAEQNKNHINNELKKKEEQLSSYEDKLFDVCGSQD 637
Query: 224 FKVTEEWQKENLKIRSKAQAKMLG 247
F+ + KE+++ SK +A + G
Sbjct: 638 FESDLDRLKEDIEKSSKQRAMLAG 661
>gb|AAF73786.1|AF154018_1 (AF154018) surface protein PspC [Streptococcus pneumoniae]
Length = 660
Score = 43.9 bits (102), Expect = 0.002
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 2/209 (0%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E KV++ K+AE + + + Y +T T L A S ++ K+ ELE K +A
Sbjct: 144 KKVAEAKKKVEEAKKKAEDQKEKDRRNYPTITYKTLELEIAESDVEV-KKAELELVKVKA 202
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
RD E + E ++ + + +K + +E K K G+ E
Sbjct: 203 NEPRDEEKIKQAEAKVESKQAEATRLENIKTDREQAEEEAKVKDEPKKRTKRGVLGEPAT 262
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVN 207
K AK++ + + + LP+ ++ ++A++ + +K+ E + +
Sbjct: 263 PDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAEDQKEKDRRNYPTIT 322
Query: 208 FYRPSSVAYLELDPRDFKVTEEWQKENLK 236
Y+ + E D K E KE K
Sbjct: 323 -YKTLELEIAESDVEVKKAELELVKEEAK 350
Score = 43.1 bits (100), Expect = 0.003
Identities = 41/153 (26%), Positives = 70/153 (44%), Gaps = 10/153 (6%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y +T T L A S ++ K+ ELE K+EA
Sbjct: 291 KKVAEAEKKVEEAKKKAEDQKEKDRRNYPTITYKTLELEIAESDVEV-KKAELELVKEEA 349
Query: 88 ENARD----RANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAI 143
+ R+ + K+ +E +Q + +++ K KKAE+ + + K+ K
Sbjct: 350 KEPRNEEKVKQAKAEVESKQAEATRLEKIKTDRKKAEEEAKRKAAE--EDKVKEK---PA 404
Query: 144 EVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
E P+P K P +P P + P Q
Sbjct: 405 EQPQPVPAPQPEKPAPKPEKPAPAPKPENPAEQ 437
>ref|NP_033038.1| (NM_009012) RAD50 homolog (S. cerevisiae) [Mus musculus]
pir||T30845 probable DNA repair protein RAD50 - mouse
gb|AAC52894.1| (U66887) RAD50 [Mus musculus]
Length = 1312
Score = 43.9 bits (102), Expect = 0.002
Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 26/271 (9%)
Query: 1 MKRVRELVKKHPEK----SSVALVVLTHAACKKAKELDDKVQDKS---KQAEKENQINWW 53
+K ELVK+ E+ +S L LT K ++LD+ KS + E + +I
Sbjct: 393 IKNFHELVKERQEREAKTASQLLSDLTDKEALKQRQLDELRDRKSGLGRTIELKTEILTK 452
Query: 54 KYSGLTIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANK-SGIE-LEQEKQKTIKE 111
K S L S L G D+ +EL+QE +AE +A K S IE L+ E E
Sbjct: 453 KQSELRHVRSELQQL--EGSSDRILELDQELTKAERELSKAEKNSSIETLKAEVMSLQNE 510
Query: 112 QKDL---VKKAEQNCQE-NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHL 167
+ DL ++K +Q ++ NH ++ + + + + + K +++ +
Sbjct: 511 KADLDRSLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSDELTSLLGYF 570
Query: 168 PNSKQPHSQRGSKAQEL------IAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLE--- 218
PN KQ SK++E+ +A L KEL S ++ I ++ +Y +
Sbjct: 571 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASAEQNKNHINNELKKKEEQLSSYEDKLF 630
Query: 219 --LDPRDFKVTEEWQKENLKIRSKAQAKMLG 247
+D + KE ++ SK +A + G
Sbjct: 631 DVCGSQDLESDLGRLKEEIEKSSKQRAMLAG 661
>gb|AAF73811.1|AF154039_1 (AF154039) surface protein PspC [Streptococcus pneumoniae]
Length = 684
Score = 43.5 bits (101), Expect = 0.002
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 12 PEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSV 71
PE S A KK E KV++ K+A+ + + ++ Y +T T L +
Sbjct: 160 PEASDTAKPNKPTELEKKVAEARKKVEEAEKKAKDQKEEDYRNYPTITYKTLEL----EI 215
Query: 72 GDID---KQIELEQEKKEAENARDRAN----KSGIELEQEKQKTIKEQKDLVKKAEQNCQ 124
+ D K+ ELE K +A+ +RD ++ +E +Q + +K+ K KKAE+ +
Sbjct: 216 AEFDVKVKEAELELLKVKAKESRDEKKIKHAEAEVESKQAEATRLKKIKTDRKKAEEEAK 275
Query: 125 ENH--------GQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
+ K +K G E K AK++ + + + LP+ +
Sbjct: 276 LKEAVEKNAATSEQGKPKRRVKRGALGEQATPDKKENDAKSSDSSVGEETLPSPSLKPEK 335
Query: 177 RGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLK 236
+ ++AQ+ +A +K+ + + N Y+ + E D + + E KE K
Sbjct: 336 KVAEAQKKVAEAEKKAKDQKEEDRR-NYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 394
>gb|AAF13459.1| (AF068649) unknown [Streptococcus pneumoniae]
Length = 516
Score = 43.1 bits (100), Expect = 0.003
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 330 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 388
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E K+ + E A
Sbjct: 389 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 443
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 444 EQPQPAPAPKAEKPAPAPKPENPAEQPKAEKPADQQAEEEYARRSEE 490
Score = 41.6 bits (96), Expect = 0.009
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 8/231 (3%)
Query: 12 PEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSV 71
PE S A +K E KV++ K+A+ + + + Y +T T L A S
Sbjct: 161 PEASDTAKPNKPTEPGEKVAEAKKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESD 220
Query: 72 GDIDKQIELEQEKKEAENARDRANKSGIELEQE-KQKTIKEQKDLVKKAEQNCQENHGQF 130
++ K+ ELE K +A RD E E E KQ K + E+ +E +
Sbjct: 221 VEV-KKAELELVKVKANEPRDEQKIKQAEAEVESKQAEATRLKKIKTDREEAEEEAKRRA 279
Query: 131 FMKKLG-----IKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
K+ G K G+ E+ K AK++ + + + LP+ ++ ++A++ +
Sbjct: 280 DAKEQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKV 339
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLK 236
+K+ E + N Y+ + E D K E KE K
Sbjct: 340 EEAKKKAEDQKEEDRR-NYPTNTYKTLELEIAESDVEVKKAELELVKEEAK 389
>gb|AAF73812.1|AF154040_1 (AF154040) surface protein PspC [Streptococcus pneumoniae]
Length = 681
Score = 43.1 bits (100), Expect = 0.003
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 305 KKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKV-KEAELELVKEEA 363
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ +R+ ++ + E +K + + +K + +E + ++ +K A E
Sbjct: 364 KESRNEEKIKQVKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPA-EQPQ 422
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
P+P K + P +P P + P Q
Sbjct: 423 PAPAPQPEKPTEEPEEPAPAPKPENPAEQ 451
>gb|AAF73778.1|AF154011_1 (AF154011) surface protein PspC [Streptococcus pneumoniae]
Length = 678
Score = 42.7 bits (99), Expect = 0.004
Identities = 35/147 (23%), Positives = 67/147 (44%), Gaps = 2/147 (1%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 307 KKVAEAEKKVEEADKKAKAQKEEDHRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 365
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E + ++ +K A + +
Sbjct: 366 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQP 425
Query: 148 E-CKTPKPAKTNQTPIQPKHLPNSKQP 173
+ P+P K + P P P ++P
Sbjct: 426 QPAPAPQPEKPTEEPENPAPAPKPEKP 452
>gb|AAF73810.1|AF154038_1 (AF154038) surface protein PspC [Streptococcus pneumoniae]
Length = 660
Score = 42.7 bits (99), Expect = 0.004
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 301 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 359
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E + ++ +K E
Sbjct: 360 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVK-------EK 412
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
+ P+PA + PK ++QP +++ + Q Y ++ E
Sbjct: 413 PAEQPQPAPAPKAAPAPKPENPAEQPKAEKPADQQAEEDYARRSEE 458
Score = 41.6 bits (96), Expect = 0.009
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 140 KKVAEAEKKVEEAKKKAEDQKEKDLRNYPTNTYKTLELDIAESDVEV-KKAELELVKEEA 198
Query: 88 ENARD--RANKSGIELEQEKQ--------KTIKEQKDLVK-KAEQNCQENH---GQFFMK 133
+ +RD + N++ ++E +K KT +E+ + K +A+ QE + +
Sbjct: 199 KESRDEKKINQAKAKVENKKAEATRLKNIKTDREKAEEAKRRADAKLQEANVATSEQDKS 258
Query: 134 KLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
K + E+ K AK++ + + + LP+ ++ ++A++ + +K+ E
Sbjct: 259 KRRANREVLGELATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAE 318
Query: 194 SLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLK 236
+ N Y+ + E D K E KE K
Sbjct: 319 DQKEEDRR-NYPTNTYKTLELEIAESDVEVKKAELELVKEEAK 360
>ref|NP_346601.1| (NC_003028) choline binding protein A [Streptococcus pneumoniae
TIGR4]
gb|AAK76241.1| (AE007507) choline binding protein A [Streptococcus pneumoniae
TIGR4]
Length = 693
Score = 42.7 bits (99), Expect = 0.004
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 331 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 389
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E K+ + E A
Sbjct: 390 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 444
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQELIAYLQKELE 193
E P PA + P PK ++QP +++ + Q Y ++ E
Sbjct: 445 EQPQPAPAPKAEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEE 491
Score = 41.6 bits (96), Expect = 0.009
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 8/231 (3%)
Query: 12 PEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSV 71
PE S A +K E KV++ K+A+ + + + Y +T T L A S
Sbjct: 162 PEASDTAKPNKPTEPGEKVAEAKKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESD 221
Query: 72 GDIDKQIELEQEKKEAENARDRANKSGIELEQE-KQKTIKEQKDLVKKAEQNCQENHGQF 130
++ K+ ELE K +A RD E E E KQ K + E+ +E +
Sbjct: 222 VEV-KKAELELVKVKANEPRDEQKIKQAEAEVESKQAEATRLKKIKTDREEAEEEAKRRA 280
Query: 131 FMKKLG-----IKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
K+ G K G+ E+ K AK++ + + + LP+ ++ ++A++ +
Sbjct: 281 DAKEQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKV 340
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLK 236
+K+ E + N Y+ + E D K E KE K
Sbjct: 341 EEAKKKAEDQKEEDRR-NYPTNTYKTLELEIAESDVEVKKAELELVKEEAK 390
>gb|AAF73796.1|AF154027_1 (AF154027) surface protein PspC [Streptococcus pneumoniae]
Length = 696
Score = 42.4 bits (98), Expect = 0.005
Identities = 54/235 (22%), Positives = 92/235 (38%), Gaps = 12/235 (5%)
Query: 12 PEKSSVALVVLTHAACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSV 71
PE S A +K E KV++ K+A+ + + + Y +T T L A S
Sbjct: 162 PEASDTAKPNKPTEPGEKVAEAKKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESD 221
Query: 72 GDIDKQIELEQEKKEAENARDRANKSGIELEQE----------KQKTIKEQKDLVKKAEQ 121
++ K+ ELE K +A RD E E E K KT +E+ + K
Sbjct: 222 VEV-KKAELELVKVKANEPRDEEKIKQAEAEVESKQAEATRLKKIKTDREEAEEEAKRRA 280
Query: 122 NCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKA 181
+ +E +K K G+ E K AK++ + + + LP+ ++ ++A
Sbjct: 281 DAKEQGKPPKRRKGRAKRGVPGEQATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEA 340
Query: 182 QELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLK 236
++ + +K+ E + N Y+ + E D K E KE K
Sbjct: 341 EKKVEEAKKKAEDQKEEDRR-NYPTNTYKTLELEIAESDVEVKKAELELVKEEAK 394
Score = 42.0 bits (97), Expect = 0.007
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+AE + + + Y T T L A S ++ K+ ELE K+EA
Sbjct: 335 KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEV-KKAELELVKEEA 393
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ R+ + E E +K + + +K + +E K+ + E A
Sbjct: 394 KEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEE-----AKRKAAEEDKVKEKPA 448
Query: 148 ECKTPKPAKTNQTPI-QPKHLPNSKQPHSQRGSKAQE 183
E P PA + P PK ++QP +++ + E
Sbjct: 449 EQPQPAPAPKAEKPAPAPKPENPAEQPKAEKPDQQAE 485
>gb|AAF73813.1|AF154041_1 (AF154041) surface protein PspC [Streptococcus pneumoniae]
Length = 565
Score = 42.4 bits (98), Expect = 0.005
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 193 KKVAEAEKKVEEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKV-KEAELELVKEEA 251
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ +R+ +EK K +K + + KKAE EN + KK E EA
Sbjct: 252 KESRN----------EEKIKQVKAKVE-SKKAEATRLENTSRQIRKK------AEEEEEA 294
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQV- 206
+ K + K +TP + + QP + A ++ P ++K +Q
Sbjct: 295 KRKAAEEDKVKETPAEQPQPAPAPQPENPTEEPENPAPAPKPEKPAEQPKAEKPADQQAE 354
Query: 207 -NFYRPSSVAYLELDPRDFKVTEE----------WQKEN 234
++ R S Y L + TE+ W++EN
Sbjct: 355 EDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQEN 393
>ref|NP_326339.1| (NC_002771) LIPOPROTEIN [Mycoplasma pulmonis]
emb|CAC13681.1| (AL445564) LIPOPROTEIN [Mycoplasma pulmonis]
Length = 680
Score = 42.4 bits (98), Expect = 0.005
Identities = 51/201 (25%), Positives = 83/201 (40%), Gaps = 28/201 (13%)
Query: 55 YSGLTIATSLLLAACSVGDIDKQIELEQEKKEA----------ENARDRANKSGIELEQE 104
+S ++I + L +C+ + K E EQE K N+ ++ N S +QE
Sbjct: 14 FSSMSILAPITLVSCASSQLQKNQEKEQENKNTTNMANSKETLNNSNNKTNDSSSSEKQE 73
Query: 105 KQKT-IKEQKDL----VKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTP----KPA 155
K ++ + Q +L K E+ Q+N Q M+K +G I + E E KT +P
Sbjct: 74 KNESPMGNQMNLNTLKPKVDEKTNQKNTNQ--MEKTPQQGPIKPQDEVEDKTQTKPNQPQ 131
Query: 156 KTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVA 215
K P + + P SK P + +KA Q L K K +N +
Sbjct: 132 KDTNEPSKMEPKPESK-PKNNENAKANSKDKNNQDSLAKKEEKPKTQEKNLN------NS 184
Query: 216 YLELDPRDFKVTEEWQKENLK 236
EL+ +D K ++ + N K
Sbjct: 185 QKELENKDSKNDDQIKDGNFK 205
>ref|NP_509610.1| (NM_077209) F49E2.5e.p [Caenorhabditis elegans]
pir||T22455 hypothetical protein F49E2.5e - Caenorhabditis elegans
emb|CAA86425.1| (Z46267) cDNA EST yk171f11.5 comes from this gene~cDNA EST
yk239f11.5 comes from this gene~cDNA EST yk367h1.5 comes
from this gene~cDNA EST yk552c3.3 comes from this
gene~cDNA EST yk574g10.3 comes from this gene~cDNA EST
yk580e7.3 comes from this gene~>
Length = 581
Score = 42.0 bits (97), Expect = 0.007
Identities = 55/263 (20%), Positives = 106/263 (39%), Gaps = 49/263 (18%)
Query: 6 ELVKKHPEKSSVALVVLTHAA-----CKKAKELDDK--VQDKSKQAEKENQINWWKYSGL 58
E VKK +K + + H A KKA E + + + K+A +E + WK
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAE-- 125
Query: 59 TIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKK 118
++I+ EQEKKEA+ + ++ E++K+K +K +K +K
Sbjct: 126 ----------------QERIQKEQEKKEADLKK-------LQAEKKKEKAVKAEK--AEK 160
Query: 119 AEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG 178
AE+ + + +++ +K + P+P TP +P ++Q G
Sbjct: 161 AEKTKKASTPAPVEEEIVVKK--VANDRSAAPAPEPKTPTNTPAEP-----AEQVQEITG 213
Query: 179 SKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIR 238
K ++ + E + P S + + +Q P V +P +E + + K +
Sbjct: 214 KKNKKNKKKSESEATAAPASVEQVVEQ-----PKVVTE---EPHQQAAPQEKKNKKNKRK 265
Query: 239 SKAQAKMLGNEKPTSPPFNLSKP 261
S+++ +E P P + P
Sbjct: 266 SESENVPAASETPVEPVVETTPP 288
>ref|NP_509605.1| (NM_077204) F49E2.5a.p [Caenorhabditis elegans]
pir||T22458 hypothetical protein F49E2.5a - Caenorhabditis elegans
emb|CAA86428.1| (Z46267) alternatively spliced, the alternatively spliced region
shows weak similarity to human ankyrin (PIR accession
number S37431)~cDNA EST EMBL:Z14429 comes from this
gene~cDNA EST yk11b7.3 comes from this gene~cDNA EST
yk4c7.3 comes from this gene>
Length = 1230
Score = 42.0 bits (97), Expect = 0.007
Identities = 55/263 (20%), Positives = 106/263 (39%), Gaps = 49/263 (18%)
Query: 6 ELVKKHPEKSSVALVVLTHAA-----CKKAKELDDK--VQDKSKQAEKENQINWWKYSGL 58
E VKK +K + + H A KKA E + + + K+A +E + WK
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAE-- 125
Query: 59 TIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKK 118
++I+ EQEKKEA+ + ++ E++K+K +K +K +K
Sbjct: 126 ----------------QERIQKEQEKKEADLKK-------LQAEKKKEKAVKAEK--AEK 160
Query: 119 AEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG 178
AE+ + + +++ +K + P+P TP +P ++Q G
Sbjct: 161 AEKTKKASTPAPVEEEIVVKK--VANDRSAAPAPEPKTPTNTPAEP-----AEQVQEITG 213
Query: 179 SKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIR 238
K ++ + E + P S + + +Q P V +P +E + + K +
Sbjct: 214 KKNKKNKKKSESEATAAPASVEQVVEQ-----PKVVTE---EPHQQAAPQEKKNKKNKRK 265
Query: 239 SKAQAKMLGNEKPTSPPFNLSKP 261
S+++ +E P P + P
Sbjct: 266 SESENVPAASETPVEPVVETTPP 288
>gb|AAF73799.1|AF154030_1 (AF154030) surface protein PspC [Streptococcus pneumoniae]
Length = 657
Score = 42.0 bits (97), Expect = 0.007
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 297 KKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKV-KEAELELVKEEA 355
Query: 88 ENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEA 147
+ RD + E E ++ + + +K + E + ++ +K A E
Sbjct: 356 KEPRDEEKIKQAKAEVESKQAEATRLEKIKTDRKKAAEEAKRKAAEEDKVKEKPA-EQPQ 414
Query: 148 ECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 180
P+P K P +P P +++P Q+ +
Sbjct: 415 PAPAPQPEKPAPKPEKPAEQPKAEKPADQQAEE 447
>ref|NP_509606.1| (NM_077205) F49E2.5d.p [Caenorhabditis elegans]
pir||T22457 hypothetical protein F49E2.5d - Caenorhabditis elegans
emb|CAA86427.1| (Z46267) cDNA EST yk227g6.5 comes from this gene~cDNA EST
yk301g11.5 comes from this gene~cDNA EST yk303d6.5 comes
from this gene [Caenorhabditis elegans]
Length = 904
Score = 42.0 bits (97), Expect = 0.007
Identities = 55/263 (20%), Positives = 106/263 (39%), Gaps = 49/263 (18%)
Query: 6 ELVKKHPEKSSVALVVLTHAA-----CKKAKELDDK--VQDKSKQAEKENQINWWKYSGL 58
E VKK +K + + H A KKA E + + + K+A +E + WK
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAE-- 125
Query: 59 TIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKK 118
++I+ EQEKKEA+ + ++ E++K+K +K +K +K
Sbjct: 126 ----------------QERIQKEQEKKEADLKK-------LQAEKKKEKAVKAEK--AEK 160
Query: 119 AEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG 178
AE+ + + +++ +K + P+P TP +P ++Q G
Sbjct: 161 AEKTKKASTPAPVEEEIVVKK--VANDRSAAPAPEPKTPTNTPAEP-----AEQVQEITG 213
Query: 179 SKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIR 238
K ++ + E + P S + + +Q P V +P +E + + K +
Sbjct: 214 KKNKKNKKKSESEATAAPASVEQVVEQ-----PKVVTE---EPHQQAAPQEKKNKKNKRK 265
Query: 239 SKAQAKMLGNEKPTSPPFNLSKP 261
S+++ +E P P + P
Sbjct: 266 SESENVPAASETPVEPVVETTPP 288
>ref|NP_509609.1| (NM_077208) F49E2.5f.p [Caenorhabditis elegans]
pir||T22456 hypothetical protein F49E2.5f - Caenorhabditis elegans
emb|CAA86426.1| (Z46267) cDNA EST yk171f11.3 comes from this gene~cDNA EST
yk367h1.3 comes from this gene~cDNA EST yk381a1.3 comes
from this gene [Caenorhabditis elegans]
Length = 611
Score = 42.0 bits (97), Expect = 0.007
Identities = 55/263 (20%), Positives = 106/263 (39%), Gaps = 49/263 (18%)
Query: 6 ELVKKHPEKSSVALVVLTHAA-----CKKAKELDDK--VQDKSKQAEKENQINWWKYSGL 58
E VKK +K + + H A KKA E + + + K+A +E + WK
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAE-- 125
Query: 59 TIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKK 118
++I+ EQEKKEA+ + ++ E++K+K +K +K +K
Sbjct: 126 ----------------QERIQKEQEKKEADLKK-------LQAEKKKEKAVKAEK--AEK 160
Query: 119 AEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG 178
AE+ + + +++ +K + P+P TP +P ++Q G
Sbjct: 161 AEKTKKASTPAPVEEEIVVKK--VANDRSAAPAPEPKTPTNTPAEP-----AEQVQEITG 213
Query: 179 SKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSVAYLELDPRDFKVTEEWQKENLKIR 238
K ++ + E + P S + + +Q P V +P +E + + K +
Sbjct: 214 KKNKKNKKKSESEATAAPASVEQVVEQ-----PKVVTE---EPHQQAAPQEKKNKKNKRK 265
Query: 239 SKAQAKMLGNEKPTSPPFNLSKP 261
S+++ +E P P + P
Sbjct: 266 SESENVPAASETPVEPVVETTPP 288
>gb|AAF51535.2| (AE003590) spen gene product [alt 1] [Drosophila melanogaster]
Length = 5560
Score = 41.6 bits (96), Expect = 0.009
Identities = 56/249 (22%), Positives = 110/249 (43%), Gaps = 22/249 (8%)
Query: 9 KKHPEKSSVALVVLTHAACKKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIATSLLLA 67
++H +KS + + ++ KK DK+ K + ++E + +I K S ++S
Sbjct: 1832 EEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKI---KKSDKNASSSDKRK 1888
Query: 68 ACSVGDIDKQI--ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
S K +E + EA++ D+A K+ +++K++ K +KDL K+ E+ ++
Sbjct: 1889 NSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKD 1948
Query: 126 NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
Q ++ + A E E E + K A+ ++ K+ +R + +E
Sbjct: 1949 RKAQ--QEEREKEDRKAKEEEKEREREKKAQEDR----------EKKEREERELREKEQR 1996
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYL-ELDPRDFKVTEEWQKENLKIRSKAQAK 244
QKE E +K + ++ R + L + D R+ ++ E+ Q+E R K Q +
Sbjct: 1997 DKEQKEKE---IREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQRE 2053
Query: 245 MLGNEKPTS 253
EK S
Sbjct: 2054 REHREKEQS 2062
>gb|AAA67447.1| (U22017) P120 [Mycoplasma hominis]
Length = 232
Score = 41.6 bits (96), Expect = 0.009
Identities = 48/210 (22%), Positives = 95/210 (44%), Gaps = 17/210 (8%)
Query: 2 KRVRELVKKHPEK----SSVALVVLTHAACKKAKELDDKVQDKSKQA-EKENQINWWKYS 56
K+ EL +K+ + SS+ + ++T A K K K++ K + EKEN+I K
Sbjct: 7 KKYEELEQKNEDLKDQLSSLKMKLMT--AESKFKSSGRKIEGYLKTSTEKENKIKESKTK 64
Query: 57 GLTIATSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLV 116
+ + +L ++ +++KQ + E + ++ E++QE++K Q +L
Sbjct: 65 LVDLRKALEELNKNLEELEKQNSDGTKNNEISSKKEEIKSKNSEIKQEEEKFEGLQTELK 124
Query: 117 KKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
+ ++ +E + K + IEV A+ K + + K L + ++
Sbjct: 125 TQKDKIIEETNK---------KSKLEIEV-ADLTVKKENISKEIEANQKELDALDKEYND 174
Query: 177 RGSKAQELIAYLQKELESLPYSQKAIAKQV 206
K+ EL L KE ++ P SQ+A A+ +
Sbjct: 175 SIKKSDELSNLLSKENDNSPASQEAAARHI 204
>gb|AAF34661.1|AF221715_1 (AF221715) split ends long isoform [Drosophila melanogaster]
Length = 5554
Score = 41.6 bits (96), Expect = 0.009
Identities = 56/249 (22%), Positives = 110/249 (43%), Gaps = 22/249 (8%)
Query: 9 KKHPEKSSVALVVLTHAACKKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIATSLLLA 67
++H +KS + + ++ KK DK+ K + ++E + +I K S ++S
Sbjct: 1826 EEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKI---KKSDKNASSSDKRK 1882
Query: 68 ACSVGDIDKQI--ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
S K +E + EA++ D+A K+ +++K++ K +KDL K+ E+ ++
Sbjct: 1883 NSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKD 1942
Query: 126 NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
Q ++ + A E E E + K A+ ++ K+ +R + +E
Sbjct: 1943 RKAQ--QEEREKEDRKAKEEEKEREREKKAQEDR----------EKKEREERELREKEQR 1990
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYL-ELDPRDFKVTEEWQKENLKIRSKAQAK 244
QKE E +K + ++ R + L + D R+ ++ E+ Q+E R K Q +
Sbjct: 1991 DKEQKEKE---IREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQRE 2047
Query: 245 MLGNEKPTS 253
EK S
Sbjct: 2048 REHREKEQS 2056
>ref|NP_034389.1| (NM_010259) guanylate nucleotide binding protein 1 [Mus musculus]
sp|Q01514|GBP1_MOUSE Interferon-induced guanylate-binding protein 1 (Guanine
nucleotide-binding protein 1) (Interferon-gamma
inducible protein MAG-1)
pir||A46459 macrophage-activation gene-1 protein mag-1 - mouse
gb|AAA37666.1| (M55544) guanylate binding protein isoform I [Mus musculus]
gb|AAA39486.1| (M63961) interferon-gamma inducible protein [Mus musculus]
Length = 589
Score = 41.6 bits (96), Expect = 0.009
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 28 KKAKELDDK-VQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKE 86
++ +EL+ K +Q K + E + + S +A +LL S+ + +KQIE+E+ K E
Sbjct: 436 QRKQELEKKYIQTPGKGLQAEVMLRKYFESKEDLADTLLKMDQSLTEKEKQIEMERIKAE 495
Query: 87 AENARDRA-----NKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
A A +RA K + +EQ++Q + K L +K EQ +E
Sbjct: 496 AAEAANRALAEMQKKHEMLMEQKEQSYQEHMKQLTEKMEQERKE 539
>gb|AAF73780.1|AF154013_1 (AF154013) surface protein PspC [Streptococcus pneumoniae]
Length = 730
Score = 41.6 bits (96), Expect = 0.009
Identities = 38/151 (25%), Positives = 71/151 (46%), Gaps = 6/151 (3%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV + K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKV-KEAELELVKEEA 361
Query: 88 ENAR--DRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEV 145
+ +R ++ N++ ++E +K + + +K +K + +E + ++ +K A E
Sbjct: 362 KESRNEEKVNQAKAKVESKKAEATRLEK--IKTDRKKAEEEAKRKAAEEDKVKEKPA-EQ 418
Query: 146 EAECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
P+P K + P P P ++P Q
Sbjct: 419 PQPAPAPQPEKPTEEPENPAPAPKPEKPAEQ 449
>gb|AAF73784.1|AF154016_1 (AF154016) surface protein PspC [Streptococcus pneumoniae]
Length = 680
Score = 41.6 bits (96), Expect = 0.009
Identities = 41/160 (25%), Positives = 74/160 (45%), Gaps = 8/160 (5%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV++ K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 312 KKVAEAEKKVEEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKV-KKAELELVKEEA 370
Query: 88 ENARD----RANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQ--FFMKKLGIKGGI 141
+ RD + K+ +E +Q + +++ K KKAE+ + + +K +
Sbjct: 371 KEPRDEEKIKQAKAEVESKQAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQP 430
Query: 142 AIEVEAECKTPKP-AKTNQTPIQPKHLPNSKQPHSQRGSK 180
A + E PKP ++ P P P +++P Q+ +
Sbjct: 431 APAPQPEKPAPKPKTSSDSKPENPAEQPKAEKPADQQAEE 470
>gb|AAF26299.1|AF184612_1 (AF184612) split ends [Drosophila melanogaster]
Length = 5476
Score = 41.6 bits (96), Expect = 0.009
Identities = 56/249 (22%), Positives = 110/249 (43%), Gaps = 22/249 (8%)
Query: 9 KKHPEKSSVALVVLTHAACKKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIATSLLLA 67
++H +KS + + ++ KK DK+ K + ++E + +I K S ++S
Sbjct: 1775 EEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKI---KKSDKNASSSDKRK 1831
Query: 68 ACSVGDIDKQI--ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
S K +E + EA++ D+A K+ +++K++ K +KDL K+ E+ ++
Sbjct: 1832 NSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKD 1891
Query: 126 NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
Q ++ + A E E E + K A+ ++ K+ +R + +E
Sbjct: 1892 RKAQ--QEEREKEDRKAKEEEKEREREKKAQEDR----------EKKEREERELREKEQR 1939
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYL-ELDPRDFKVTEEWQKENLKIRSKAQAK 244
QKE E +K + ++ R + L + D R+ ++ E+ Q+E R K Q +
Sbjct: 1940 DKEQKEKE---IREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQRE 1996
Query: 245 MLGNEKPTS 253
EK S
Sbjct: 1997 REHREKEQS 2005
>ref|NP_524718.1| (NM_079979) split ends; polycephalon; yippee interacting protein 1
[Drosophila melanogaster]
gb|AAF13218.1|AF188205_1 (AF188205) Spen RNP motif protein long isoform [Drosophila
melanogaster]
Length = 5533
Score = 41.6 bits (96), Expect = 0.009
Identities = 56/249 (22%), Positives = 110/249 (43%), Gaps = 22/249 (8%)
Query: 9 KKHPEKSSVALVVLTHAACKKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIATSLLLA 67
++H +KS + + ++ KK DK+ K + ++E + +I K S ++S
Sbjct: 1832 EEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKI---KKSDKNASSSDKRK 1888
Query: 68 ACSVGDIDKQI--ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
S K +E + EA++ D+A K+ +++K++ K +KDL K+ E+ ++
Sbjct: 1889 NSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKD 1948
Query: 126 NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
Q ++ + A E E E + K A+ ++ K+ +R + +E
Sbjct: 1949 RKAQ--QEEREKEDRKAKEEEKEREREKKAQEDR----------EKKEREERELREKEQR 1996
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYL-ELDPRDFKVTEEWQKENLKIRSKAQAK 244
QKE E +K + ++ R + L + D R+ ++ E+ Q+E R K Q +
Sbjct: 1997 DKEQKEKE---IREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQRE 2053
Query: 245 MLGNEKPTS 253
EK S
Sbjct: 2054 REHREKEQS 2062
>ref|XP_124199.1| (XM_124199) similar to Interferon-induced guanylate-binding protein
1 (Guanine nucleotide-binding protein 1)
(Interferon-gamma inducible protein MAG-1) [Mus
musculus]
Length = 510
Score = 41.6 bits (96), Expect = 0.009
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 28 KKAKELDDK-VQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKE 86
++ +EL+ K +Q K + E + + S +A +LL S+ + +KQIE+E+ K E
Sbjct: 357 QRKQELEKKYIQTPGKGLQAEVMLRKYFESKEDLADTLLKMDQSLTEKEKQIEMERIKAE 416
Query: 87 AENARDRA-----NKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
A A +RA K + +EQ++Q + K L +K EQ +E
Sbjct: 417 AAEAANRALAEMQKKHEMLMEQKEQSYQEHMKQLTEKMEQERKE 460
>gb|AAF73797.1|AF154028_1 (AF154028) surface protein PspC [Streptococcus pneumoniae]
Length = 730
Score = 41.6 bits (96), Expect = 0.009
Identities = 38/151 (25%), Positives = 71/151 (46%), Gaps = 6/151 (3%)
Query: 28 KKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDIDKQIELEQEKKEA 87
KK E + KV + K+A+ + + + Y T T L A S + K+ ELE K+EA
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKV-KEAELELVKEEA 361
Query: 88 ENAR--DRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEV 145
+ +R ++ N++ ++E +K + + +K +K + +E + ++ +K A E
Sbjct: 362 KESRNEEKVNQAKAKVESKKAEATRLEK--IKTDRKKAEEEAKRKAAEEDKVKEKPA-EQ 418
Query: 146 EAECKTPKPAKTNQTPIQPKHLPNSKQPHSQ 176
P+P K + P P P ++P Q
Sbjct: 419 PQPAPAPQPEKPTEEPENPAPAPKPEKPAEQ 449
>gb|AAF51534.2| (AE003590) spen gene product [alt 2] [Drosophila melanogaster]
Length = 5533
Score = 41.6 bits (96), Expect = 0.009
Identities = 56/249 (22%), Positives = 110/249 (43%), Gaps = 22/249 (8%)
Query: 9 KKHPEKSSVALVVLTHAACKKAKELDDKVQDK-SKQAEKENQINWWKYSGLTIATSLLLA 67
++H +KS + + ++ KK DK+ K + ++E + +I K S ++S
Sbjct: 1832 EEHTKKSGTSTSQSSSSSSKKISSTHDKLHSKHNNRSESDKKI---KKSDKNASSSDKRK 1888
Query: 68 ACSVGDIDKQI--ELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQE 125
S K +E + EA++ D+A K+ +++K++ K +KDL K+ E+ ++
Sbjct: 1889 NSSTSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKREKDLRKQVEREEKD 1948
Query: 126 NHGQFFMKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 185
Q ++ + A E E E + K A+ ++ K+ +R + +E
Sbjct: 1949 RKAQ--QEEREKEDRKAKEEEKEREREKKAQEDR----------EKKEREERELREKEQR 1996
Query: 186 AYLQKELESLPYSQKAIAKQVNFYRPSSVAYL-ELDPRDFKVTEEWQKENLKIRSKAQAK 244
QKE E +K + ++ R + L + D R+ ++ E+ Q+E R K Q +
Sbjct: 1997 DKEQKEKE---IREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQRE 2053
Query: 245 MLGNEKPTS 253
EK S
Sbjct: 2054 REHREKEQS 2062
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,189,689
Number of Sequences: 1026957
Number of extensions: 6974772
Number of successful extensions: 39683
Number of sequences better than 1.0e-02: 45
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 39521
Number of HSP's gapped (non-prelim): 115
length of query: 269
length of database: 324,149,939
effective HSP length: 119
effective length of query: 150
effective length of database: 201,942,056
effective search space: 30291308400
effective search space used: 30291308400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 96 (41.6 bits)