BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645821|ref|NP_207999.1| hypothetical protein
[Helicobacter pylori 26695]
(222 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207999.1| (NC_000915) hypothetical protein [Helicoba... 450 e-126
gb|AAC45815.1| (AF020706) unknown protein [Helicobacter pyl... 427 e-119
ref|NP_223848.1| (NC_000921) putative [Helicobacter pylori ... 414 e-115
ref|NP_372844.1| (NC_002758) hypothetical protein [Staphylo... 44 0.001
ref|NP_217629.1| (NC_000962) hypothetical protein Rv3113 [M... 44 0.001
ref|NP_337721.1| (NC_002755) hydrolase, haloacid dehalogena... 44 0.001
ref|NP_059827.1| (NC_002377) virP [Agrobacterium tumefacien... 42 0.006
>ref|NP_207999.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64670 hypothetical protein HP1207 - Helicobacter pylori (strain 26695)
gb|AAD08256.1| (AE000626) H. pylori predicted coding region HP1207 [Helicobacter
pylori 26695]
Length = 222
Score = 450 bits (1157), Expect = e-126
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MALEVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ 60
MALEVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ
Sbjct: 1 MALEVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ 60
Query: 61 YFYNEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAA 120
YFYNEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAA
Sbjct: 61 YFYNEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAA 120
Query: 121 LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQ 180
LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQ
Sbjct: 121 LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQ 180
Query: 181 ANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE 222
ANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE
Sbjct: 181 ANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE 222
>gb|AAC45815.1| (AF020706) unknown protein [Helicobacter pylori]
Length = 222
Score = 427 bits (1099), Expect = e-119
Identities = 208/222 (93%), Positives = 218/222 (97%)
Query: 1 MALEVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ 60
MALEVVLWDFDGVIFDSMHLK EGF+ALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ
Sbjct: 1 MALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ 60
Query: 61 YFYNEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAA 120
YFYNEILKTPIAQEEVDALALEFG IIEQKLFDR HLNSEVMAFIDKHY+N++FHIASAA
Sbjct: 61 YFYNEILKTPIAQEEVDALALEFGAIIEQKLFDRGHLNSEVMAFIDKHYQNYIFHIASAA 120
Query: 121 LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQ 180
LHSELQVLCEFLGI KYF+SVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDS+NDYESA+
Sbjct: 121 LHSELQVLCEFLGITKYFRSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSINDYESAK 180
Query: 181 ANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE 222
AN+VAFLGYNSKVLKNLVGQNGYQGKYLESF+GFDLQNF+KE
Sbjct: 181 ANKVAFLGYNSKVLKNLVGQNGYQGKYLESFEGFDLQNFMKE 222
>ref|NP_223848.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71844 hypothetical protein jhp1130 - Helicobacter pylori (strain J99)
gb|AAD06713.1| (AE001541) putative [Helicobacter pylori J99]
Length = 222
Score = 414 bits (1064), Expect = e-115
Identities = 202/222 (90%), Positives = 214/222 (95%)
Query: 1 MALEVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQ 60
MALEVVLWDFDGVIFDSMHLK EGF+ALFQKHGN ++E LKQFEVYHYQSGGISRNEKIQ
Sbjct: 1 MALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNDSKEGLKQFEVYHYQSGGISRNEKIQ 60
Query: 61 YFYNEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAA 120
YFYNEILKTPIAQEE+DALALEFG IIEQKLFDR HLNSEVMAFIDKHY+N++FHIASAA
Sbjct: 61 YFYNEILKTPIAQEEIDALALEFGAIIEQKLFDRGHLNSEVMAFIDKHYQNYIFHIASAA 120
Query: 121 LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQ 180
LHSELQVLCEFLGI KYFKSVEGSPP+KPKIIANIIQKYAY+P RMLMIGDSVNDYESA+
Sbjct: 121 LHSELQVLCEFLGITKYFKSVEGSPPDKPKIIANIIQKYAYDPSRMLMIGDSVNDYESAK 180
Query: 181 ANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE 222
AN+VAFLGYNSKVLKNLVGQ+GYQGKYLESFKGFDLQNF KE
Sbjct: 181 ANKVAFLGYNSKVLKNLVGQDGYQGKYLESFKGFDLQNFAKE 222
>ref|NP_372844.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_375433.1| (NC_002745) hypothetical protein, simialr to phosphoglycolate
phosphatase [Staphylococcus aureus subsp. aureus N315]
ref|NP_647058.1| (NC_003923) ORFID:MW2241~hypothetical protein, similar to
phosphoglycolate phosphatase [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB43412.1| (AP003136) ORFID:SA2111~hypothetical protein, similar to
phosphoglycolate phosphatase [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58482.1| (AP003365) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
dbj|BAB96106.1| (AP004829) ORFID:MW2241~hypothetical protein, similar to
phosphoglycolate phosphatase [Staphylococcus aureus
subsp. aureus MW2]
Length = 211
Score = 43.9 bits (102), Expect = 0.001
Identities = 47/190 (24%), Positives = 76/190 (39%), Gaps = 37/190 (19%)
Query: 6 VLWDFDGVIFDS-MHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQYFYN 64
V++DFDG I D+ HL N + KH + + Y GG
Sbjct: 5 VIFDFDGTIIDTEQHLFN-----VINKHLEMHNADPISIDFYRSSIGGA----------- 48
Query: 65 EILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVF--------HI 116
A + D L G+ + KL++ HL S + ID F I
Sbjct: 49 -------ATDLHDHLIKAIGSENKDKLYEEHHLTSTTLPMIDTIKSLMAFLKQRHIPMAI 101
Query: 117 ASAALHSELQVLCEFLGIIKYFKSVEGSPPNK-----PKIIANIIQKYAYNPGRMLMIGD 171
A++++ +E+ + LG+ Y + V G + P++ + +Q+ Y P + L I D
Sbjct: 102 ATSSVKAEIMPTFKALGLDDYIEVVVGREDVEQVKPDPELYLSAVQQLNYMPTQCLAIED 161
Query: 172 SVNDYESAQA 181
SVN +A A
Sbjct: 162 SVNGATAAIA 171
>ref|NP_217629.1| (NC_000962) hypothetical protein Rv3113 [Mycobacterium tuberculosis
H37Rv]
pir||H70920 hypothetical protein Rv3113 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08370.1| (Z95150) hypothetical protein Rv3113 [Mycobacterium tuberculosis
H37Rv]
Length = 222
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/69 (34%), Positives = 37/69 (52%), Gaps = 3/69 (4%)
Query: 116 IASAALHSELQVLCEFLGIIKYFKSVEGSP---PNKPKIIANIIQKYAYNPGRMLMIGDS 172
+ S A H EL + GI K+F + G KP ++A +I + + NP R++ IGDS
Sbjct: 110 LLSLAPHDELMHFVQKYGIAKWFNGIRGRTRPDQEKPMMLAELIMQRSLNPTRVVHIGDS 169
Query: 173 VNDYESAQA 181
+ D +A A
Sbjct: 170 LEDAAAASA 178
>ref|NP_337721.1| (NC_002755) hydrolase, haloacid dehalogenase-like family
[Mycobacterium tuberculosis CDC1551]
gb|AAK47535.1| (AE007136) hydrolase, haloacid dehalogenase-like family
[Mycobacterium tuberculosis CDC1551]
Length = 222
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/69 (34%), Positives = 37/69 (52%), Gaps = 3/69 (4%)
Query: 116 IASAALHSELQVLCEFLGIIKYFKSVEGSP---PNKPKIIANIIQKYAYNPGRMLMIGDS 172
+ S A H EL + GI K+F + G KP ++A +I + + NP R++ IGDS
Sbjct: 110 LLSLAPHDELMHFVQKYGIAKWFNEIRGRTRPDQEKPMMLAELIMQRSLNPTRVVHIGDS 169
Query: 173 VNDYESAQA 181
+ D +A A
Sbjct: 170 LEDAAAASA 178
>ref|NP_059827.1| (NC_002377) virP [Agrobacterium tumefaciens]
gb|AAB91561.1| (AF242881) virP [Agrobacterium tumefaciens]
Length = 210
Score = 41.6 bits (96), Expect = 0.006
Identities = 42/187 (22%), Positives = 83/187 (43%), Gaps = 18/187 (9%)
Query: 4 EVVLWDFDGVIFDSMHLKNEGFRALFQKHGNKNQESLKQFEVYHYQSGGISRNEKIQYFY 63
+++++DFDG + DS R + ++H S Q E G+S + +++
Sbjct: 8 KLIIFDFDGTLADSGAWILSALREMSERH-RFVTPSDTQIEYLR----GLSICQVLRWLR 62
Query: 64 NEILKTPIAQEEVDALALEFGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAALHS 123
+ + P+ +++ LA E FD +V+ H ++ +A + +S
Sbjct: 63 VPVWRIPLIVKDLRKLARE-------ATFDIFPRTEKVLL----HLEDQGVELAILSSNS 111
Query: 124 ELQVLCEFLGIIKYFKSVEGSPP--NKPKIIANIIQKYAYNPGRMLMIGDSVNDYESAQA 181
+ + YF +EGS P K K I I+++ + +L++GD V D E+A++
Sbjct: 112 TENIRRVLGPLDSYFTYIEGSSPLFGKGKRINKILRRCKKSRNEVLLVGDEVRDIEAAKS 171
Query: 182 NEVAFLG 188
+A G
Sbjct: 172 QNIASAG 178
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,046,876
Number of Sequences: 1026957
Number of extensions: 5602732
Number of successful extensions: 13650
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13643
Number of HSP's gapped (non-prelim): 7
length of query: 222
length of database: 324,149,939
effective HSP length: 117
effective length of query: 105
effective length of database: 203,995,970
effective search space: 21419576850
effective search space used: 21419576850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)