BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645825|ref|NP_208003.1| hypothetical protein
[Helicobacter pylori 26695]
         (81 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208003.1|  (NC_000915) hypothetical protein [Helicoba...   166  7e-41
ref|NP_223852.1|  (NC_000921) putative [Helicobacter pylori ...    68  3e-11

>ref|NP_208003.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64671 hypothetical protein HP1211 - Helicobacter pylori (strain 26695)
 gb|AAD08267.1| (AE000627) H. pylori predicted coding region HP1211 [Helicobacter
          pylori 26695]
          Length = 81

 Score =  166 bits (419), Expect = 7e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRL 60
          MVPKVGLEPTRDCSHQILSLACLPIPPLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRL
Sbjct: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRL 60

Query: 61 LPPPPQDGVSTNSTTSAKNLK 81
          LPPPPQDGVSTNSTTSAKNLK
Sbjct: 61 LPPPPQDGVSTNSTTSAKNLK 81



>ref|NP_223852.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71845 hypothetical protein jhp1134 - Helicobacter pylori (strain J99)
 gb|AAD06716.1| (AE001541) putative [Helicobacter pylori J99]
          Length = 31

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 30/31 (96%), Positives = 31/31 (99%)

Query: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRI 31
          MVPKVGLEPTRDCSHQILSLACLPIPPLRR+
Sbjct: 1  MVPKVGLEPTRDCSHQILSLACLPIPPLRRV 31



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,218,279
Number of Sequences: 1026957
Number of extensions: 1878034
Number of successful extensions: 4985
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4983
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 324,149,939
effective HSP length: 57
effective length of query: 24
effective length of database: 265,613,390
effective search space: 6374721360
effective search space used: 6374721360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)