BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645828|ref|NP_208006.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(240 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208006.1| (NC_000915) conserved hypothetical protein... 481 e-135
ref|NP_223855.1| (NC_000921) putative [Helicobacter pylori ... 458 e-128
ref|NP_486035.1| (NC_003272) hypothetical protein [Nostoc s... 64 1e-09
ref|NP_107072.1| (NC_002678) hypothetical protein [Mesorhiz... 64 1e-09
ref|NP_216546.1| (NC_000962) hypothetical protein Rv2030c [... 64 1e-09
gb|AAA73345.1| (M93129) [Mycobacterium tuberculosis DNA seq... 64 1e-09
ref|NP_633804.1| (NC_003901) hypothetical protein [Methanos... 58 8e-08
ref|NP_617580.1| (NC_003552) phosphoribosyltransferase [Met... 55 5e-07
ref|NP_216659.1| (NC_000962) hypothetical protein Rv2143 [M... 55 7e-07
ref|NP_386252.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 55 9e-07
gb|AAA63059.1| (U15184) u650s [Mycobacterium leprae] 50 3e-05
ref|NP_335006.1| (NC_002755) conserved hypothetical protein... 49 5e-05
ref|NP_215085.1| (NC_000962) hypothetical protein Rv0571c [... 49 5e-05
ref|NP_213031.1| (NC_000918) hypothetical protein [Aquifex ... 47 2e-04
>ref|NP_208006.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64671 conserved hypothetical protein HP1214 - Helicobacter pylori
(strain 26695)
gb|AAD08259.1| (AE000627) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 240
Score = 481 bits (1237), Expect = e-135
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MRKGMHLNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAH 60
MRKGMHLNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAH
Sbjct: 1 MRKGMHLNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAH 60
Query: 61 ALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKR 120
ALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKR
Sbjct: 61 ALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKR 120
Query: 121 AYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTP 180
AYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTP
Sbjct: 121 AYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTP 180
Query: 181 IVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNMPNLKKEH 240
IVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNMPNLKKEH
Sbjct: 181 IVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNMPNLKKEH 240
>ref|NP_223855.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71845 hypothetical protein jhp1137 - Helicobacter pylori (strain J99)
gb|AAD06706.1| (AE001541) putative [Helicobacter pylori J99]
Length = 234
Score = 458 bits (1178), Expect = e-128
Identities = 227/234 (97%), Positives = 232/234 (99%)
Query: 7 LNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKF 66
+NTDFSHITDIEGMRF+NEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLA+ALAQKF
Sbjct: 1 MNTDFSHITDIEGMRFVNEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKF 60
Query: 67 GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDI 126
GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDI LDYVYGEAKRAYEEDI
Sbjct: 61 GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDIALDYVYGEAKRAYEEDI 120
Query: 127 LSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNV 186
LSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPI+AQNV
Sbjct: 121 LSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPILAQNV 180
Query: 187 AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNMPNLKKEH 240
AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEE+EKYLGANN PNLKKEH
Sbjct: 181 AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEIEKYLGANNAPNLKKEH 234
>ref|NP_486035.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73694.1| (AP003587) ORF_ID:all1995~hypothetical protein [Nostoc sp. PCC
7120]
Length = 221
Score = 63.9 bits (154), Expect = 1e-09
Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 2/187 (1%)
Query: 47 IMLALSFNALYLAHALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINS 106
++LAL + + +A+ A D+L + + P N + + ++ ++N+S++N
Sbjct: 27 LVLALPRGGVPVGFEVARALNAPLDVLVVRKLGVPDNEELAMGAIASGGVRILNQSIVND 86
Query: 107 FDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQT 166
I+ D V E ++ YR +LK + + +VD G+ TG +
Sbjct: 87 IQIS-DEVIARVAVQEERELERRESMYRGDRPFPNLKGQTVILVDDGLATGATMWAAIIA 145
Query: 167 CLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEK 226
+++ ++I I P+ A + ++S + + P F SV Y++ + +++EV +
Sbjct: 146 VRQQQPKEIVIAVPVAAPETCEEMQSKVEKIFCANTPSPFYSVGMWYEKFPQTTDDEVRE 205
Query: 227 YLG-ANN 232
L ANN
Sbjct: 206 LLNKANN 212
>ref|NP_107072.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB52858.1| (AP003009) hypothetical protein [Mesorhizobium loti]
Length = 235
Score = 63.9 bits (154), Expect = 1e-09
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 41 IDLKDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAPLNSKCEIALVSES--MDIV 98
+DL ++LAL + +A +A+ GA D+L + + AP N++ +A V + D+V
Sbjct: 19 LDLCRPVVLALPRGGIPVAAEVAKALGAPLDVLVVRKVGAPGNAELAVAAVVDGNPPDVV 78
Query: 99 MNESLINSFDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGF 158
+N ++ ++ + D ++ Y+ S+ K + +VD G TG
Sbjct: 79 LNREIVEAYALD-DAELASLVALERPELERRRLAYKGSRRSLSVAGKTVILVDDGAATGT 137
Query: 159 RAGLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKR 218
+ ++ + ++I + P+ + L + D V+ + +P F ++ +HY +
Sbjct: 138 TMKVAIRALRHRAPREIIVAVPVSPPDTLADLATEADRVVCLSQPGRFRALGYHYLRFPQ 197
Query: 219 LSNEEVEKYLG-ANNMPNLKKEH 240
LS+ EV L A + +K H
Sbjct: 198 LSDSEVAAVLDEAGQLHKTRKSH 220
>ref|NP_216546.1| (NC_000962) hypothetical protein Rv2030c [Mycobacterium
tuberculosis H37Rv]
ref|NP_336554.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
pir||E70942 hypothetical protein Rv2030c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17244.1| (AL021899) hypothetical protein Rv2030c [Mycobacterium tuberculosis
H37Rv]
gb|AAK46368.1| (AE007059) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 681
Score = 63.9 bits (154), Expect = 1e-09
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 2/233 (0%)
Query: 7 LNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKF 66
L T + +T R + +++ E+ + D D I+L L+ L +A +A
Sbjct: 2 LMTAAADVTRRSPRRVFRDRREAGRVLAELLAAYRDQPDVIVLGLARGGLPVAWEVAAAL 61
Query: 67 GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDI 126
A D + + AP + + + ++ +V+N+ ++ IT + A+R E +
Sbjct: 62 HAPLDAFVVRKLGAPGHDEFAVGALASGGRVVVNDDVVRGLRITPQQLRDIAEREGRE-L 120
Query: 127 LSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNV 186
L YR + K + +VD G+ TG VQ + I I P ++
Sbjct: 121 LRRESAYRGERPPTDITGKTVIVVDDGLATGASMFAAVQALRDAQPAQIVIAVPAAPEST 180
Query: 187 AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNM-PNLKK 238
+ L D V+ P F++V + + +++++EEV + L P+L++
Sbjct: 181 CREFAGLVDDVVCATMPTPFLAVGESFWDFRQVTDEEVRRLLATPTAGPSLRR 233
>gb|AAA73345.1| (M93129) [Mycobacterium tuberculosis DNA sequence, complete cds.],
gene products
Length = 385
Score = 63.9 bits (154), Expect = 1e-09
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 2/233 (0%)
Query: 7 LNTDFSHITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKF 66
L T + +T R + +++ E+ + D D I+L L+ L +A +A
Sbjct: 2 LMTAAADVTRRSPRRVFRDRREAGRVLAELLAAYRDQPDVIVLGLARGGLPVAWEVAAAL 61
Query: 67 GATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDI 126
A D + + AP + + + ++ +V+N+ ++ IT + A+R E +
Sbjct: 62 HAPLDAFVVRKLGAPGHDEFAVGALASGGRVVVNDDVVRGLRITPQQLRDIAEREGRE-L 120
Query: 127 LSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNV 186
L YR + K + +VD G+ TG VQ + I I P ++
Sbjct: 121 LRRESAYRGERPPTDITGKTVIVVDDGLATGASMFAAVQALRDAQPAQIVIAVPAAPEST 180
Query: 187 AQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEVEKYLGANNM-PNLKK 238
+ L D V+ P F++V + + +++++EEV + L P+L++
Sbjct: 181 CREFAGLVDDVVCATMPTPFLAVGESFWDFRQVTDEEVRRLLATPTAGPSLRR 233
>ref|NP_633804.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM31476.1| (AE013414) hypothetical protein [Methanosarcina mazei Goe1]
Length = 221
Score = 58.2 bits (139), Expect = 8e-08
Identities = 41/203 (20%), Positives = 91/203 (44%), Gaps = 2/203 (0%)
Query: 22 FINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAP 81
F + DA +L E+ +++ + D ++LAL + +A +A++ D+ + + P
Sbjct: 8 FKDRADAGKRLAKEL-SKYSNSPDVLILALPRGGVPVAFEVAKELKVKMDVFIVRKLGVP 66
Query: 82 LNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIKS 141
N + + ++ V+NE++I S+ I D V ++ +YR
Sbjct: 67 GNEELAMGAIASEDVRVLNENIIKSYKIP-DRVIATVAANELRELERRERKYRGSRPKPD 125
Query: 142 LKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVY 201
++ + ++D G+ TG V+ K + + P + ++ + + + D +I
Sbjct: 126 MEGMTVILIDDGLATGATMHAAVEALKTKRPAKLVVAVPTASPDMCKFFKKIVDEMICAT 185
Query: 202 RPECFVSVEHHYKELKRLSNEEV 224
PE F +V Y++ + ++EEV
Sbjct: 186 TPEPFYAVGAWYEDFSQTTDEEV 208
>ref|NP_617580.1| (NC_003552) phosphoribosyltransferase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06060.1| (AE010965) phosphoribosyltransferase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 224
Score = 55.5 bits (132), Expect = 5e-07
Identities = 44/203 (21%), Positives = 94/203 (45%), Gaps = 5/203 (2%)
Query: 22 FINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAP 81
F N +DA KL ++ ++ D K+ I+LA+ + + +++K G + ++ + + P
Sbjct: 2 FKNRKDAGEKLA-QVLEKYRD-KNPIVLAIPRGGVEVGLQVSRKLGTEFSLIIVRKLPFP 59
Query: 82 LNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIKS 141
N + V+E + E+ S+ + + + K+ ++ I R+GN +
Sbjct: 60 DNPEAGFGAVAEDGSTFIFENA--SYWLARETIE-RIKQDQIAEVERRINALRRGNPLPE 116
Query: 142 LKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVY 201
L + + +VD GI G ++ C ++ I + P+ + A+ +E D ++ +
Sbjct: 117 LSGRTVILVDDGIAMGSTMRAAIELCRARKAGKIVVAVPVTGRMAAKVIEKEADELVVLD 176
Query: 202 RPECFVSVEHHYKELKRLSNEEV 224
P F +V Y+ +S+EEV
Sbjct: 177 IPINFRAVAQAYENWYDVSDEEV 199
>ref|NP_216659.1| (NC_000962) hypothetical protein Rv2143 [Mycobacterium tuberculosis
H37Rv]
ref|NP_336672.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
pir||C70578 hypothetical protein Rv2143 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08650.1| (Z95388) hypothetical protein Rv2143 [Mycobacterium tuberculosis
H37Rv]
gb|AAK46486.1| (AE007068) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 352
Score = 55.1 bits (131), Expect = 7e-07
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 2/208 (0%)
Query: 21 RFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDILFLEPILA 80
RF + DA L +E+ + + ++L L+ + + +A GA D+ + +
Sbjct: 138 RFRDRRDAGRVLADELAS-YRGRDRLLVLGLARGGVPVGWEVASALGAELDVFLVRKLGV 196
Query: 81 PLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIK 140
P + + ++ +VMN+ +++S IT D A + ++ YR G +
Sbjct: 197 PQWRELAMGALASGGGVVMNDDVVSSLRIT-DQQVRAAIDSETAELQRRELAYRGGRPVV 255
Query: 141 SLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISV 200
+ + + +VD GI TG V+T + I + P+ + L + D V+
Sbjct: 256 DPRARIVILVDDGIATGASMLAAVRTIRATGPESIVVAVPVGPATACRELAAEADDVVCA 315
Query: 201 YRPECFVSVEHHYKELKRLSNEEVEKYL 228
P F +V Y + +++++EV + L
Sbjct: 316 TMPAAFEAVGQVYNDFHQVTDDEVRELL 343
>ref|NP_386252.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46725.1| (AL591789) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 236
Score = 54.7 bits (130), Expect = 9e-07
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 22 FINEEDALNKLINEIH---TRHIDLKDSIMLALSFNALYLAHALAQKFGATYDILFLEPI 78
F + DA +L I T D D +++AL + +A +A+ GA+ ++L + I
Sbjct: 13 FADRADAGRRLARVIEAHLTEKADFADPLVMALPRGGVPVAFEVARTLGASLELLIVRKI 72
Query: 79 LAPLNSKCEI-ALV-SESMDIVMNESLINSFDITLDYVYGEAKRAYEEDILSHIYQYRKG 136
AP + + + ALV S+ +V+N + + + YV E +R E + Y
Sbjct: 73 GAPGHPEFGLGALVDSDEPQVVLNAEAMRIANPSEKYVQAETERQRLELARRRVL-YLGD 131
Query: 137 NAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDG 196
A S +N+ IVD GI TG A + + + + P+ ++ L D
Sbjct: 132 QARISPSGRNVIIVDDGIATGGTAKAAAKALRQAGAAALMLAVPVAPKSAIASLGDDVDR 191
Query: 197 VISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P F +V +Y + ++ ++ EV
Sbjct: 192 LVCLASPTPFHAVSIYYDDFEQTTDAEV 219
>gb|AAA63059.1| (U15184) u650s [Mycobacterium leprae]
Length = 258
Score = 49.7 bits (117), Expect = 3e-05
Identities = 36/181 (19%), Positives = 75/181 (40%), Gaps = 1/181 (0%)
Query: 44 KDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESL 103
KD ++L L + +A +A+ A D+L + + P + + E V N+S+
Sbjct: 48 KDMVVLGLPRGGVPVAFEVAKALRAPLDVLVVRKLGVPFQPELAFGAIGEGGVRVTNDSV 107
Query: 104 INSFDITLDYVYGEAKRAYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRAGLG 163
+ D++ D + + +++ ++ + + + + IVD GI TG A
Sbjct: 108 VAEADLSQDEM-AAIETEQRAELMRRSERFHRRHDRAPIGGRIAVIVDDGIATGATAKAS 166
Query: 164 VQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEE 223
Q + + + PI +++ D V+ ++ P F +V Y + S+ E
Sbjct: 167 CQVARAQGVSKVVLAVPIGGRDIFARFAGYADEVVCLHTPAFFCAVGQGYCNFTQTSDAE 226
Query: 224 V 224
V
Sbjct: 227 V 227
>ref|NP_335006.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
gb|AAK44820.1| (AE006957) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 451
Score = 48.9 bits (115), Expect = 5e-05
Identities = 41/188 (21%), Positives = 76/188 (39%), Gaps = 7/188 (3%)
Query: 44 KDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESL 103
K ++L L + +A +A+ A D+L + + P + + E V+N+ +
Sbjct: 32 KAVVVLGLPRGGVPVAFEVAKSLQAPLDVLVVRKLGVPFQPELAFGAIGEDGVRVLNDDV 91
Query: 104 INSFDI---TLDYVYGEAKRAYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRA 160
+ + +D V E K+ E + ++R+G L + IVD GI TG A
Sbjct: 92 VRGTHLDAAAMDAV--ERKQLIE--LQRRAERFRRGRDRIPLTGRIAVIVDDGIATGATA 147
Query: 161 GLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLS 220
Q + + PI ++ D V+ + P F +V Y+ + S
Sbjct: 148 KAACQVARAHGADKVVLAVPIGPDDIVARFAGYADEVVCLATPALFFAVGQGYRNFTQTS 207
Query: 221 NEEVEKYL 228
++EV +L
Sbjct: 208 DDEVVAFL 215
>ref|NP_215085.1| (NC_000962) hypothetical protein Rv0571c [Mycobacterium
tuberculosis H37Rv]
pir||B70933 hypothetical protein Rv0571c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17442.1| (AL021942) hypothetical protein Rv0571c [Mycobacterium tuberculosis
H37Rv]
Length = 443
Score = 48.9 bits (115), Expect = 5e-05
Identities = 41/188 (21%), Positives = 76/188 (39%), Gaps = 7/188 (3%)
Query: 44 KDSIMLALSFNALYLAHALAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESL 103
K ++L L + +A +A+ A D+L + + P + + E V+N+ +
Sbjct: 24 KAVVVLGLPRGGVPVAFEVAKSLQAPLDVLVVRKLGVPFQPELAFGAIGEDGVRVLNDDV 83
Query: 104 INSFDI---TLDYVYGEAKRAYEEDILSHIYQYRKGNAIKSLKDKNIFIVDRGIETGFRA 160
+ + +D V E K+ E + ++R+G L + IVD GI TG A
Sbjct: 84 VRGTHLDAAAMDAV--ERKQLIE--LQRRAERFRRGRDRIPLTGRIAVIVDDGIATGATA 139
Query: 161 GLGVQTCLKKECQDIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLS 220
Q + + PI ++ D V+ + P F +V Y+ + S
Sbjct: 140 KAACQVARAHGADKVVLAVPIGPDDIVARFAGYADEVVCLATPALFFAVGQGYRNFTQTS 199
Query: 221 NEEVEKYL 228
++EV +L
Sbjct: 200 DDEVVAFL 207
>ref|NP_213031.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||D70305 conserved hypothetical protein aq_059 - Aquifex aeolicus
gb|AAC06433.1| (AE000671) hypothetical protein [Aquifex aeolicus]
Length = 175
Score = 46.6 bits (109), Expect = 2e-04
Identities = 36/171 (21%), Positives = 73/171 (42%), Gaps = 11/171 (6%)
Query: 62 LAQKFGATYDILFLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYVYGE-AKR 120
+A++F ++ + + P N + + ++S+ L Y+ E K+
Sbjct: 1 MAERFNIPMSVVLVRKLGLPWNEEAGFGAIDPDGTPYYDKSV-------LSYLSEEDIKQ 53
Query: 121 AYEEDILSHIYQYRK--GNAIKSLKDKNIFIVDRGIETGFRAGLGVQTCLKKECQDIYIL 178
E+++ + RK L+ + + IVD G+ TG+ A KK ++ I
Sbjct: 54 VVEKELKELRERERKFVPRGYPDLRGRQVIIVDDGVATGYTAIAAANWAKKKGASEVIIA 113
Query: 179 TPIVAQNVAQGLESLCDGVISVYRPEC-FVSVEHHYKELKRLSNEEVEKYL 228
P+ + + LE D + Y + +V Y++ +LS+EE ++YL
Sbjct: 114 VPVCPSDAKERLERYADKFVCYYSSDAPSFAVGMFYRDFHQLSDEEAKEYL 164
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,647,241
Number of Sequences: 1026957
Number of extensions: 5724319
Number of successful extensions: 14164
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14153
Number of HSP's gapped (non-prelim): 14
length of query: 240
length of database: 324,149,939
effective HSP length: 118
effective length of query: 122
effective length of database: 202,969,013
effective search space: 24762219586
effective search space used: 24762219586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)