BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645829|ref|NP_208007.1| hypothetical protein
[Helicobacter pylori 26695]
         (80 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223856.1|  (NC_000921) putative role in outermembrane...   168  1e-41
ref|NP_208007.1|  (NC_000915) hypothetical protein [Helicoba...   168  1e-41

>ref|NP_223856.1| (NC_000921) putative role in outermembrane permeability
           [Helicobacter pylori J99]
 pir||G71845 probable role in outermembrane permeability - Helicobacter pylori
 gb|AAD06707.1| (AE001541) putative role in outermembrane permeability
           [Helicobacter pylori J99]
          Length = 766

 Score =  168 bits (425), Expect = 1e-41
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1   MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 60
           MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL
Sbjct: 687 MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 746

Query: 61  ELDFSPITKTNVTYRSLQRK 80
           ELDFSPITKTNVTYRSLQRK
Sbjct: 747 ELDFSPITKTNVTYRSLQRK 766



>ref|NP_208007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD08265.1| (AE000627) H. pylori predicted coding region HP1215 [Helicobacter
          pylori 26695]
          Length = 80

 Score =  168 bits (425), Expect = 1e-41
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 60
          MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL
Sbjct: 1  MSADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILTGDPNQPIRVFENNYVKL 60

Query: 61 ELDFSPITKTNVTYRSLQRK 80
          ELDFSPITKTNVTYRSLQRK
Sbjct: 61 ELDFSPITKTNVTYRSLQRK 80



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.143    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,952,743
Number of Sequences: 1026957
Number of extensions: 1924564
Number of successful extensions: 3193
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3191
Number of HSP's gapped (non-prelim): 2
length of query: 80
length of database: 324,149,939
effective HSP length: 56
effective length of query: 24
effective length of database: 266,640,347
effective search space: 6399368328
effective search space used: 6399368328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 90 (39.3 bits)