BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645831|ref|NP_208009.1| hypothetical protein
[Helicobacter pylori 26695]
         (159 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208009.1|  (NC_000915) hypothetical protein [Helicoba...   327  2e-89
ref|NP_223857.1|  (NC_000921) putative [Helicobacter pylori ...   305  1e-82
ref|NP_282398.1|  (NC_002163) hypothetical protein Cj1251 [C...    52  2e-06

>ref|NP_208009.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64672 hypothetical protein HP1217 - Helicobacter pylori (strain 26695)
 gb|AAD08266.1| (AE000627) H. pylori predicted coding region HP1217 [Helicobacter
           pylori 26695]
          Length = 159

 Score =  327 bits (839), Expect = 2e-89
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLHSLY 60
           MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLHSLY
Sbjct: 1   MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLHSLY 60

Query: 61  WLANPIYHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120
           WLANPIYHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK
Sbjct: 61  WLANPIYHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120

Query: 121 RLGLKIVVFLCPFLWFVAFKNPYHRAWHEEKSKSLLVLF 159
           RLGLKIVVFLCPFLWFVAFKNPYHRAWHEEKSKSLLVLF
Sbjct: 121 RLGLKIVVFLCPFLWFVAFKNPYHRAWHEEKSKSLLVLF 159



>ref|NP_223857.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71845 hypothetical protein jhp1139 - Helicobacter pylori (strain J99)
 gb|AAD06708.1| (AE001541) putative [Helicobacter pylori J99]
          Length = 159

 Score =  305 bits (781), Expect = 1e-82
 Identities = 149/159 (93%), Positives = 151/159 (94%)

Query: 1   MHSPNLEKEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLSDLLDACDFLHSLY 60
           M SPNLEKEETEIIETLL+REKMRLCPLYWRILAFL D LLVAFLLSDLL AC FLHSLY
Sbjct: 1   MRSPNLEKEETEIIETLLVREKMRLCPLYWRILAFLIDSLLVAFLLSDLLRACAFLHSLY 60

Query: 61  WLANPIYHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120
           WL NPIY+SAFV MGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK
Sbjct: 61  WLTNPIYYSAFVVMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLK 120

Query: 121 RLGLKIVVFLCPFLWFVAFKNPYHRAWHEEKSKSLLVLF 159
           RLGLKIVVFLCPFLWFV FKNPYHRAWHEEKSKSLLVLF
Sbjct: 121 RLGLKIVVFLCPFLWFVVFKNPYHRAWHEEKSKSLLVLF 159



>ref|NP_282398.1| (NC_002163) hypothetical protein Cj1251 [Campylobacter jejuni]
 pir||E81332 hypothetical protein Cj1251 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73505.1| (AL139077) hypothetical protein Cj1251 [Campylobacter jejuni]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 40/154 (25%), Positives = 74/154 (47%), Gaps = 17/154 (11%)

Query: 12  EIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLL-----SDLLDACDFLHSLYWLANPI 66
           E ++  L RE +++     R+LAFL D ++++ ++       L+ A D   +   + N  
Sbjct: 3   ENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDRLIQAKDLFETTQIVGN-- 60

Query: 67  YHSAFVAMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIIDIYLADCPSRAILLKRLGLKI 126
                  +GFI+L+  Y+  F  L   SL K++ +I I+D  L D P+      R  ++ 
Sbjct: 61  -----FYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKPNLIQSCIRSAVRQ 115

Query: 127 V---VFLCPFLWFVAFKNPYHRAWHEEKSKSLLV 157
           V    F+  F W  A  N   +AW +  +++++V
Sbjct: 116 VSAMAFMLGFAW--ALSNDLRKAWEDYLARTIVV 147



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.335    0.148    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,904,627
Number of Sequences: 1026957
Number of extensions: 3586501
Number of successful extensions: 14156
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14153
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 324,149,939
effective HSP length: 111
effective length of query: 48
effective length of database: 210,157,712
effective search space: 10087570176
effective search space used: 10087570176
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 92 (40.0 bits)