BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645837|ref|NP_208015.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208015.1| (NC_000915) hypothetical protein [Helicoba... 228 8e-60
ref|NP_223862.1| (NC_000921) putative [Helicobacter pylori ... 218 1e-56
ref|NP_518475.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN... 54 3e-07
ref|NP_562501.1| (NC_003366) conserved hypothetical protein... 50 5e-06
ref|NP_615706.1| (NC_003552) conserved hypothetical protein... 49 8e-06
ref|NP_560720.1| (NC_003364) thiamine biosynthesis protein ... 49 8e-06
ref|NP_283773.1| (NC_003116) putative periplasmic protein [... 49 8e-06
ref|NP_633928.1| (NC_003901) hypothetical protein [Methanos... 49 8e-06
ref|NP_273826.1| (NC_003112) phage shock protein E precurso... 49 1e-05
ref|NP_385301.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 49 1e-05
ref|NP_390530.1| (NC_000964) similar to hypothetical protei... 49 1e-05
ref|NP_213334.1| (NC_000918) hypothetical protein [Aquifex ... 48 2e-05
ref|NP_563456.1| (NC_003366) conserved hypothetical protein... 46 7e-05
dbj|BAB83477.1| (AB063171) ORF1 [Staphylococcus hominis] 45 2e-04
ref|NP_217632.1| (NC_000962) moeB [Mycobacterium tuberculos... 45 2e-04
ref|NP_415573.1| (NC_000913) orf, hypothetical protein [Esc... 44 3e-04
ref|NP_287189.1| (NC_002655) orf, hypothetical protein [Esc... 44 3e-04
ref|NP_370571.1| (NC_002758) conserved hypothetical protein... 44 3e-04
pir||S16889 hypothetical protein 39.9 - Escherichia coli >g... 44 3e-04
dbj|BAA86644.1| (AB033763) hypothetical protein [Staphyloco... 44 3e-04
ref|NP_455650.1| (NC_003198) conserved hypothetical protein... 44 3e-04
ref|NP_460127.1| (NC_003197) putative enzyme related to sul... 44 3e-04
ref|NP_487945.1| (NC_003272) hypothetical protein [Nostoc s... 44 5e-04
ref|NP_561650.1| (NC_003366) NADH oxidase [Clostridium perf... 44 5e-04
ref|NP_654719.1| (NC_003995) UPF0033, Uncharacterized prote... 43 6e-04
ref|NP_246372.1| (NC_002663) unknown [Pasteurella multocida... 43 6e-04
ref|NP_376502.1| (NC_003106) 133aa long conserved hypotheti... 43 8e-04
ref|NP_617406.1| (NC_003552) hypothetical protein (multi-do... 42 0.001
ref|NP_660695.1| (NC_004061) hypothetical 40.0 kD protein i... 42 0.001
gb|EAA02717.1| (AAAB01006298) ebiP455 [Anopheles gambiae st... 42 0.001
ref|NP_281704.1| (NC_002163) hypothetical protein Cj0519 [C... 42 0.001
ref|NP_232501.1| (NC_002506) phage shock protein E [Vibrio ... 42 0.002
ref|NP_441758.1| (NC_000911) molybdopterin biosynthesis Moe... 42 0.002
ref|NP_486946.1| (NC_003272) molybdopterin biosynthesis pro... 41 0.002
ref|NP_617231.1| (NC_003552) metallo-beta-lactamase [Methan... 41 0.002
ref|NP_485549.1| (NC_003272) hypothetical protein [Nostoc s... 41 0.003
ref|NP_635597.1| (NC_003902) conserved hypothetical protein... 41 0.003
dbj|BAB97445.1| (AP005274) Zn-dependent hydrolases, includi... 40 0.004
ref|NP_343537.1| (NC_002754) Conserved hypothetical protein... 40 0.004
ref|NP_658760.1| (NC_003995) RHOD, Rhodanese Homology Domai... 40 0.004
ref|NP_603767.1| (NC_003454) Rhodanese-related sulfurtransf... 40 0.004
ref|NP_599304.1| (NC_003450) COG0491:Zn-dependent hydrolase... 40 0.004
ref|NP_406495.1| (NC_003143) putative pyridine nucleotide-d... 40 0.005
ref|NP_243786.1| (NC_002570) BH2920~unknown conserved prote... 40 0.005
ref|NP_629326.1| (NC_003888) putative sulfurylase [Streptom... 40 0.005
ref|NP_640576.1| (NC_003919) conserved hypothetical protein... 40 0.005
ref|NP_602703.1| (NC_003454) Coenzyme A disulfide reductase... 40 0.005
ref|NP_461724.1| (NC_003197) putative rhodanese-related sul... 40 0.005
ref|NP_457196.1| (NC_003198) conserved hypothetical protein... 40 0.005
ref|NP_285627.1| (NC_001264) conserved hypothetical protein... 40 0.007
ref|NP_443020.1| (NC_000911) hypothetical protein [Synechoc... 40 0.007
ref|NP_405985.1| (NC_003143) conserved hypothetical protein... 40 0.007
ref|NP_287880.1| (NC_002655) phage shock protein [Escherich... 39 0.009
ref|NP_393982.1| (NC_002578) Thiamine biosynthesis ATP pyro... 39 0.009
sp|Q9HKT9|THII_THEAC Probable thiamine biosynthesis protein... 39 0.009
>ref|NP_208015.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64672 hypothetical protein HP1223 - Helicobacter pylori (strain 26695)
gb|AAD08279.1| (AE000628) H. pylori predicted coding region HP1223 [Helicobacter
pylori 26695]
Length = 110
Score = 228 bits (582), Expect = 8e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVL 60
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVL
Sbjct: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVL 60
Query: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKKN 110
LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKKN
Sbjct: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKKN 110
>ref|NP_223862.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71843 hypothetical protein jhp1144 - Helicobacter pylori (strain J99)
gb|AAD06730.1| (AE001542) putative [Helicobacter pylori J99]
Length = 112
Score = 218 bits (555), Expect = 1e-56
Identities = 108/112 (96%), Positives = 109/112 (96%), Gaps = 2/112 (1%)
Query: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVL 60
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKD+KVL
Sbjct: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDQKVL 60
Query: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDT--CDKKN 110
LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDT DKKN
Sbjct: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTSLSDKKN 112
>ref|NP_518475.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD13882.1| (AL646058) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 151
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 12 VNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALD 71
+N + +VVDVRE EY HLP A ++ D A L+++K+ ++L C+ G+RA
Sbjct: 60 INRRNAVVVDVREAAEYVAGHLPQAKHAALGDLASKAAGLAKNKETPIILVCQTGQRAGR 119
Query: 72 AAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101
A + + GY+ Y LEG + +++ G +V
Sbjct: 120 AQAVLKQAGYSEVYSLEGGLAAWQQAGLPIV 150
>ref|NP_562501.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81291.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 150
Score = 50.1 bits (118), Expect = 5e-06
Identities = 23/64 (35%), Positives = 41/64 (63%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMH 77
+++DVR DE+ E HL NA I V + ++ + + KD+ VL++CR+G+R+ +A +
Sbjct: 68 LILDVRNEDEFAEGHLKNAIQIPVKELKENLSDIEKFKDELVLVYCRSGKRSAEAVDILK 127
Query: 78 ELGY 81
E G+
Sbjct: 128 ENGF 131
>ref|NP_615706.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04186.1| (AE010735) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 151
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 7 ISLEE----VNFNDFIVVDVRELDEYEELHLPNATLISVN---------DQEKLADFLSQ 53
+S+EE + ++ ++DVR E+ H+ ATLI V DQ A
Sbjct: 42 VSVEEARGMIEKDEVFILDVRTPAEFNSSHIEGATLIPVTNSGGSNLSPDQLLEARINEV 101
Query: 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101
+DKK+L++CR G R++ A+K + GY+ Y +EG + + G+ +V
Sbjct: 102 PRDKKILVYCRTGHRSITASKILVTAGYSDVYNMEGGITAWIGAGYPVV 150
>ref|NP_560720.1| (NC_003364) thiamine biosynthesis protein (thiI), probable
[Pyrobaculum aerophilum]
sp|Q8ZT61|THII_PYRAE Probable thiamine biosynthesis protein thiI
gb|AAL64902.1| (AE009929) thiamine biosynthesis protein (thiI), probable
[Pyrobaculum aerophilum]
Length = 484
Score = 49.3 bits (116), Expect = 8e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMH 77
++VD+R+ + Y++ HLP A V+D L D L +DK + +C +G +LD A+S+
Sbjct: 401 VIVDLRDEESYKKWHLPGAVRAGVDDVLALVDKLG--RDKTYVFYCYSGGLSLDVAESLR 458
Query: 78 ELGYTPYYL 86
+LG Y L
Sbjct: 459 KLGIKAYSL 467
>ref|NP_283773.1| (NC_003116) putative periplasmic protein [Neisseria meningitidis
Z2491]
pir||A81947 probable periplasmic protein NMA0994 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84264.1| (AL162754) putative periplasmic protein [Neisseria meningitidis
Z2491]
Length = 119
Score = 49.3 bits (116), Expect = 8e-06
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 7 ISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAG 66
+S + + + +DVR E+ E HL NA I V+ + + KD V L+CR+G
Sbjct: 27 VSAAQTAQHSAVWIDVRSEQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSG 86
Query: 67 RRALDAAKSMHELGYTPYYLEGNVYDFEKYGFR 99
RRA A + + + GYT G D K G +
Sbjct: 87 RRAEAALQELKKAGYTNVANHGGYEDLLKKGMK 119
>ref|NP_633928.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM31600.1| (AE013427) hypothetical protein [Methanosarcina mazei Goe1]
Length = 147
Score = 49.3 bits (116), Expect = 8e-06
Identities = 32/109 (29%), Positives = 59/109 (53%), Gaps = 14/109 (12%)
Query: 7 ISLEE----VNFNDFIVVDVRELDEYEELHLPNATLISVNDQ-------EKLADFLSQH- 54
+S+EE ++ D ++DVR E+ H+ ATLI V + +KL +
Sbjct: 36 VSVEEAKELLDEEDVFLLDVRTPPEFNSFHIEGATLIPVTNSSGSSLSSDKLLEARVDEV 95
Query: 55 -KDKKVLLHCRAGRRALDAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101
++KK+L++CR+G R++ A+K + GY+ Y +EG + + G+ +V
Sbjct: 96 PENKKILVYCRSGHRSISASKILVNAGYSQVYNMEGGINAWTGAGYPVV 144
>ref|NP_273826.1| (NC_003112) phage shock protein E precursor, putative [Neisseria
meningitidis MC58]
pir||E81158 phage shock protein E precursor, probable NMB0784 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF41197.1| (AE002432) phage shock protein E precursor, putative [Neisseria
meningitidis MC58]
Length = 119
Score = 48.9 bits (115), Expect = 1e-05
Identities = 29/80 (36%), Positives = 40/80 (49%)
Query: 20 VDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHEL 79
+DVR E+ E HL NA I V+ + + KD V L+CR+GRRA A + + +
Sbjct: 40 IDVRSEQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAEAALQELKKA 99
Query: 80 GYTPYYLEGNVYDFEKYGFR 99
GYT G D K G +
Sbjct: 100 GYTNVANHGGYEDLLKKGMK 119
>ref|NP_385301.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC45774.1| (AL591786) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 126
Score = 48.9 bits (115), Expect = 1e-05
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 6 AISLEEVNFNDFIVVDVRELDEYEEL-HLPNATLISVNDQEKLADFLSQH------KDKK 58
A + E++ D ++VDVR+ E ++ + A +S E AD SQ+ KDK
Sbjct: 22 AEAAEKMRSGDVLIVDVRDPTEVQQTGRIKGAVNVSRGMLEFRADPESQYHNPVFQKDKT 81
Query: 59 VLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYG 97
+LLHC +G R+ A K++ ++GY+ Y G D + G
Sbjct: 82 ILLHCASGGRSALAGKTLQDMGYSAVYNIGGFKDLAEGG 120
>ref|NP_390530.1| (NC_000964) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
sp|P54433|YRKF_BACSU Hypothetical protein yrkF
pir||D69976 conserved hypothetical protein yrkF - Bacillus subtilis
dbj|BAA12361.1| (D84432) YrkF [Bacillus subtilis]
emb|CAB14594.1| (Z99117) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
Length = 185
Score = 48.5 bits (114), Expect = 1e-05
Identities = 22/63 (34%), Positives = 43/63 (67%), Gaps = 2/63 (3%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVRE++EYE+ H+P I + + EK A+ L+++ + + + C +GRR+ AA++M +
Sbjct: 107 ILDVREIEEYEKAHIPGVVHIPLGEVEKRANELNENDE--IYIICHSGRRSEMAARTMKK 164
Query: 79 LGY 81
G+
Sbjct: 165 QGF 167
>ref|NP_213334.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||B70343 conserved hypothetical protein aq_477 - Aquifex aeolicus
gb|AAC06748.1| (AE000692) hypothetical protein [Aquifex aeolicus]
Length = 110
Score = 48.1 bits (113), Expect = 2e-05
Identities = 27/80 (33%), Positives = 49/80 (60%), Gaps = 4/80 (5%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMH 77
+++DVR E+ ++ +PN+ LI + D+ + A F + KDKK +++CR G R+ A +
Sbjct: 25 VLLDVRTPPEHFQVRIPNSMLIPL-DELRYA-FQNLPKDKKYIVYCRIGERSAFATYFLR 82
Query: 78 ELGYTPYYLEGN--VYDFEK 95
++GY Y L G ++ +EK
Sbjct: 83 QMGYEAYNLAGGILIWPYEK 102
>ref|NP_563456.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB82246.1| (AP003194) conserved hypothetical protein [Clostridium
perfringens]
Length = 109
Score = 46.2 bits (108), Expect = 7e-05
Identities = 26/84 (30%), Positives = 49/84 (57%), Gaps = 2/84 (2%)
Query: 4 DYAISLEEVNFN-DFIVVDVRELDEY-EELHLPNATLISVNDQEKLADFLSQHKDKKVLL 61
D S++ ++ N D +++DVR +EY E+ ++ NA LI + D L ++D +L+
Sbjct: 6 DITESIKLIDENKDLLILDVRTEEEYKEDGYIKNAKLIPLGRLLFSIDELDGYEDSPILV 65
Query: 62 HCRAGRRALDAAKSMHELGYTPYY 85
+CR G R++ A + + + G+T Y
Sbjct: 66 YCRRGSRSMQACEILEDNGFTELY 89
>dbj|BAB83477.1| (AB063171) ORF1 [Staphylococcus hominis]
Length = 357
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/77 (31%), Positives = 44/77 (56%), Gaps = 4/77 (5%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVR+ +E+E H+ NA L SV + E Q K+K ++C++G R+ A++ + +
Sbjct: 26 LIDVRQPEEFELGHIKNALLHSVENIETF----KQSKNKTYYIYCKSGNRSRKASQFLAQ 81
Query: 79 LGYTPYYLEGNVYDFEK 95
GY L+G +E+
Sbjct: 82 RGYDVVNLDGGYTAYEQ 98
>ref|NP_217632.1| (NC_000962) moeB [Mycobacterium tuberculosis H37Rv]
ref|NP_337724.1| (NC_002755) HesA/MoeB/ThiF family protein [Mycobacterium
tuberculosis CDC1551]
pir||C70921 probable molybdopterin biosynthesis protein moeB - Mycobacterium
tuberculosis (strain H37RV)
emb|CAB08373.1| (Z95150) moeB [Mycobacterium tuberculosis H37Rv]
gb|AAK47538.1| (AE007136) HesA/MoeB/ThiF family protein [Mycobacterium
tuberculosis CDC1551]
Length = 389
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKS 75
+F++VDVRE E++ H+P + LI + A DK+++L+C++G R+ A +
Sbjct: 300 NFLLVDVREPAEFDIAHIPGSILIPKGEIGSAAGLAQLPLDKEIVLYCKSGIRSAQALTT 359
Query: 76 MHELG-YTPYYLEGNVYDFEK 95
+ G + +L+G + ++ +
Sbjct: 360 LKAAGLHNVKHLDGGIAEWTR 380
>ref|NP_415573.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P24188|YCEA_ECOLI Hypothetical protein yceA (ORF39.9)
pir||D64848 yceA protein - Escherichia coli
gb|AAC74139.1| (AE000207) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35853.1| (D90742) Hypothetical protein 39.9 [Escherichia coli]
dbj|BAA35864.1| (D90743) Hypothetical protein 39.9 [Escherichia coli]
Length = 350
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVN----DQEKLADFLSQHKDKKVLLHCRAGRRALD 71
D + +D+R EYE H NA I + K + + HKDKK++++C G R
Sbjct: 149 DALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGYTP-YYLEGNVYDFEK 95
A+ M G+ +++EG + ++ +
Sbjct: 209 ASAWMKHNGFNKVWHIEGGIIEYAR 233
>ref|NP_287189.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_309460.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG55801.1|AE005316_6 (AE005316) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34856.1| (AP002555) hypothetical protein [Escherichia coli O157:H7]
Length = 350
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVN----DQEKLADFLSQHKDKKVLLHCRAGRRALD 71
D + +D+R EYE H NA I + K + + HKDKK++++C G R
Sbjct: 149 DALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGYTP-YYLEGNVYDFEK 95
A+ M G+ +++EG + ++ +
Sbjct: 209 ASAWMKHNGFNKVWHIEGGIIEYAR 233
>ref|NP_370571.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373284.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
pir||T44109 conserded hypothetical protein [imported] - Staphylococcus aureus
dbj|BAA82211.1| (D86934) ORF N052 [Staphylococcus aureus]
dbj|BAB41262.1| (AP003129) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB47615.1| (AB037671) hypothetical protein [Staphylococcus aureus]
dbj|BAB56209.1| (AP003358) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 354
Score = 44.3 bits (103), Expect = 3e-04
Identities = 25/80 (31%), Positives = 44/80 (54%), Gaps = 4/80 (5%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVR +EYE H+ +TL V E++ F +++ +K +HC++G R+ A + +
Sbjct: 26 LIDVRTKEEYELGHINGSTLHPV---EEIKSF-NKNSNKTYYIHCKSGNRSTKACDYLAK 81
Query: 79 LGYTPYYLEGNVYDFEKYGF 98
GY L+G D+E F
Sbjct: 82 QGYDVVNLKGGYKDYEAKNF 101
>pir||S16889 hypothetical protein 39.9 - Escherichia coli
emb|CAA43318.1| (X61000) Orf39.9 [Escherichia coli]
Length = 350
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVN----DQEKLADFLSQHKDKKVLLHCRAGRRALD 71
D + +D+R EYE H NA I + K + + HKDKK++++C G R
Sbjct: 149 DALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGYTP-YYLEGNVYDFEK 95
A+ M G+ +++EG + ++ +
Sbjct: 209 ASAWMKHNGFNKVWHIEGGIIEYAR 233
>dbj|BAA86644.1| (AB033763) hypothetical protein [Staphylococcus aureus]
Length = 355
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVR +E+E H+ NA L SV + E Q K+K ++C++G R+ A++ + +
Sbjct: 26 LIDVRHPEEFELGHIKNALLHSVENIETF----KQSKNKTYYIYCKSGNRSRKASQFLAQ 81
Query: 79 LGYTPYYLEGNVYDFEK 95
GY L+G +E+
Sbjct: 82 RGYDVVNLDGGYTAYEQ 98
>ref|NP_455650.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08280.1| (AL627269) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 350
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVN----DQEKLADFLSQHKDKKVLLHCRAGRRALD 71
D + +D+R EYE H NA I + K + L +H DKK++++C G R
Sbjct: 149 DAVFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMLREHADKKIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGYTP-YYLEGNVYDFEK 95
A+ M G+ +++EG + ++ +
Sbjct: 209 ASAWMKHNGFNKVWHIEGGIIEYAR 233
>ref|NP_460127.1| (NC_003197) putative enzyme related to sulfurtransferases
[Salmonella typhimurium LT2]
gb|AAL20086.1| (AE008750) putative enzyme related to sulfurtransferases
[Salmonella typhimurium LT2]
Length = 350
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVN----DQEKLADFLSQHKDKKVLLHCRAGRRALD 71
D + +D+R EYE H NA I + K + L +H DKK++++C G R
Sbjct: 149 DAVFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMLREHADKKIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGYTP-YYLEGNVYDFEK 95
A+ M G+ +++EG + ++ +
Sbjct: 209 ASAWMKHNGFNKVWHIEGGIIEYAR 233
>ref|NP_487945.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75604.1| (AP003594) ORF_ID:alr3905~hypothetical protein [Nostoc sp. PCC
7120]
Length = 177
Score = 43.5 bits (101), Expect = 5e-04
Identities = 28/94 (29%), Positives = 57/94 (59%), Gaps = 5/94 (5%)
Query: 6 AISLEE-VNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCR 64
AI+L++ + N I++DVRE EY H+P+A L+ +++ AD ++ + + ++L+CR
Sbjct: 12 AITLKQWIEDNTVILIDVREAAEYAAEHIPDAKLLPLSNFR--ADQVTP-QSENIVLYCR 68
Query: 65 AGRRALDAAKSMHELGYT-PYYLEGNVYDFEKYG 97
+G R+ A + + + G + Y L+G + ++ G
Sbjct: 69 SGNRSNQALQKLIDAGVSNVYQLQGGLPTWKAAG 102
>ref|NP_561650.1| (NC_003366) NADH oxidase [Clostridium perfringens]
dbj|BAB80440.1| (AP003188) NADH oxidase [Clostridium perfringens]
Length = 566
Score = 43.5 bits (101), Expect = 5e-04
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVRE+ EYE H+ A + +++ D + D+ V LHCR+ +R+ +A ++
Sbjct: 470 IIDVREVSEYEAGHIKGAKNLPLSEIRDRLDEIPT--DRPVYLHCRSAQRSYNACLALQH 527
Query: 79 LGYTPYY 85
LG+ Y
Sbjct: 528 LGFDNIY 534
>ref|NP_654719.1| (NC_003995) UPF0033, Uncharacterized protein family UPF0033
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 186
Score = 43.1 bits (100), Expect = 6e-04
Identities = 28/78 (35%), Positives = 43/78 (54%), Gaps = 6/78 (7%)
Query: 7 ISLEE--VNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCR 64
I LEE V+ + V+DVRE E+ H+P+AT + + + E L K K++ + CR
Sbjct: 95 IELEEILVSGEECTVLDVREAAEFAFGHIPSATSMPLGELESLV----LDKTKQIYVVCR 150
Query: 65 AGRRALDAAKSMHELGYT 82
G R+ A + + E GYT
Sbjct: 151 TGNRSDVACQMLKEKGYT 168
>ref|NP_246372.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03517.1| (AE006179) unknown [Pasteurella multocida]
Length = 146
Score = 43.1 bits (100), Expect = 6e-04
Identities = 25/81 (30%), Positives = 44/81 (53%), Gaps = 3/81 (3%)
Query: 6 AISLEEVNFNDFIVVDVRELDEYEELHLPNA-TLISVNDQEKLADFLSQHKDKKVLLHCR 64
A+SL +N D +VVD+R +DE+E H+ N+ ++ ++ + HKD V+L C
Sbjct: 49 AVSL--MNNEDAVVVDLRSIDEFERGHIINSLNILPAEIKKNNVGKIHHHKDTPVILACA 106
Query: 65 AGRRALDAAKSMHELGYTPYY 85
G A +A+ + + G+ Y
Sbjct: 107 TGMSAGASAELLSKQGFNRVY 127
>ref|NP_376502.1| (NC_003106) 133aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65611.1| (AP000983) 133aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 133
Score = 42.7 bits (99), Expect = 8e-04
Identities = 28/88 (31%), Positives = 47/88 (52%), Gaps = 5/88 (5%)
Query: 15 NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAK 74
N +++D+R EYE+ H+P A L+ ++ + L + QHK+ V+ C G RA A
Sbjct: 30 NQVLLLDIRTPMEYEDHHIPGALLVPLDYLDVLLHKI-QHKEVAVI--CEHGNRARYATY 86
Query: 75 SMHEL--GYTPYYLEGNVYDFEKYGFRM 100
M EL G YY+ G + + + G+ +
Sbjct: 87 GMPELWKGKKVYYMIGGMAGWMQMGYEV 114
>ref|NP_617406.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05886.1| (AE010943) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 182
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/102 (29%), Positives = 51/102 (49%), Gaps = 15/102 (14%)
Query: 19 VVDVRELDEYEELHLPNATLISVN-----DQEKLADF---------LSQHKDKKVLLHCR 64
++DVR EY+ H+ A LI + D L+D L ++KD KV ++C+
Sbjct: 71 ILDVRTPAEYKHGHIGGAKLIPLKNVPAYDPVNLSDSQLLPNRINELPKNKDIKVFVYCK 130
Query: 65 AGRRALDAAKSMHELGY-TPYYLEGNVYDFEKYGFRMVYDDT 105
AG R A++ + + GY Y ++G + + G +V+D T
Sbjct: 131 AGNRGAAASQLIADSGYKNVYNIQGGIDSWVNGGCPIVFDPT 172
>ref|NP_660695.1| (NC_004061) hypothetical 40.0 kD protein in htrB-dinI [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67906.1| (AE014111) hypothetical 40.0 kD protein in htrB-dinI [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 312
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQ------EKLADFLSQHKDKKVLLHCRAGRRALD 71
I +D+R EYE H PNA I + Q +K+ + K+KK++++C G R
Sbjct: 152 IFIDMRNSYEYEIGHFPNA--IEIKSQTFREQLKKVIQIMHYAKNKKIVMYCTGGIRCEK 209
Query: 72 AAKSMHELGYTPYY-----LEGNVYDFEKYGFRMVY 102
A+ MH G+ Y + G V+D K G +++
Sbjct: 210 ASAWMHFNGFKYVYHLKNGILGYVHDANKNGLPILF 245
>gb|EAA02717.1| (AAAB01006298) ebiP455 [Anopheles gambiae str. PEST]
Length = 344
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLI---SVNDQEKLA-DFLSQHKDKKVLLHCRAGRRALD 71
D + VD+R EYE H NA + + DQ +A + L +KDK ++++C G R
Sbjct: 149 DTLFVDMRNHYEYEVGHFENAIEVPSDTFRDQLPMAVEMLQDNKDKNIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGY-TPYYLEGNVYDFEK 95
A+ M G+ Y++EG + ++ +
Sbjct: 209 ASAYMLHNGFKNVYHVEGGIIEYAR 233
>ref|NP_281704.1| (NC_002163) hypothetical protein Cj0519 [Campylobacter jejuni]
pir||H81397 hypothetical protein Cj0519 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75156.1| (AL139075) hypothetical protein Cj0519 [Campylobacter jejuni]
Length = 105
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1 MLEDYAISL-EEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKL--ADFLSQ---- 53
M+E+ + SL + + N + + DVR E+EE LPNA +++ D + L A FL +
Sbjct: 1 MIENISASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYDNQGLLNAKFLDEFQSK 60
Query: 54 -HKDKKVLLHCRAGRRALDAAKSMHE-LGYTPYYLEGNV 90
+ KK+ CR+G R++ AA+ + E LG L+G +
Sbjct: 61 RDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGM 99
>ref|NP_232501.1| (NC_002506) phage shock protein E [Vibrio cholerae]
pir||B82502 phage shock protein E VCA0100 [imported] - Vibrio cholerae (group
O1 strain N16961)
gb|AAF96014.1| (AE004352) phage shock protein E [Vibrio cholerae]
Length = 123
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/65 (33%), Positives = 40/65 (60%), Gaps = 2/65 (3%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMH 77
+++DVR ++EY + HL A +++ E F + K++ ++L+CR+G R+ A K +
Sbjct: 44 LLIDVRTVEEYAQGHLDTALNWPLSEVETA--FNAIEKERPIVLYCRSGNRSGIAQKYLI 101
Query: 78 ELGYT 82
E GYT
Sbjct: 102 EQGYT 106
>ref|NP_441758.1| (NC_000911) molybdopterin biosynthesis MoeB protein [Synechocystis
sp. PCC 6803]
pir||S76179 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18438.1| (D90914) molybdopterin biosynthesis MoeB protein [Synechocystis sp.
PCC 6803]
Length = 392
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 8 SLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQE------KLADFLSQHKDKKVLL 61
+L E DFI++DVR +EY+ +P + L+ + D E K+ + L H + ++
Sbjct: 291 ALMESQEKDFILLDVRNPNEYDIARIPGSVLVPLPDIEEGHGIDKVKELLDGH-EGILIA 349
Query: 62 HCRAGRRALDAAKSMHELGYTPYYLEGNV 90
HC+ G R+ A + E G ++G +
Sbjct: 350 HCKLGGRSTKALSLLKEAGIEGINVKGGI 378
>ref|NP_486946.1| (NC_003272) molybdopterin biosynthesis protein [Nostoc sp. PCC
7120]
dbj|BAB74605.1| (AP003591) molybdopterin biosynthesis protein [Nostoc sp. PCC 7120]
Length = 390
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/81 (29%), Positives = 43/81 (52%), Gaps = 9/81 (11%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQE------KLADFLSQHKDKKVLLHCRAGRRA 69
DF+++DVR +EYE +P + LI + D E K+ + L+ H +++ HC+ G R+
Sbjct: 299 DFVLLDVRNPNEYEIAKIPGSVLIPLPDIENGNGVAKVKEALNGH---RLIAHCKLGGRS 355
Query: 70 LDAAKSMHELGYTPYYLEGNV 90
A + E G ++G +
Sbjct: 356 AKALAILKESGIVGTNVKGGI 376
>ref|NP_617231.1| (NC_003552) metallo-beta-lactamase [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
gb|AAM05711.1| (AE010920) metallo-beta-lactamase [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
Length = 457
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/87 (28%), Positives = 49/87 (55%), Gaps = 3/87 (3%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKS 75
+ +++DVR +E+EE H+ A I V E+ D + KD ++++C + RR+ AA
Sbjct: 372 EIVILDVRSNEEWEEGHIEGARHIYVGHVEENLDEIP--KDCPIVVYCGSARRSNIAASV 429
Query: 76 MHELGYTPYY-LEGNVYDFEKYGFRMV 101
+ + GY Y + G++ ++ G+ +V
Sbjct: 430 LKKHGYRKIYNVLGSMVAWKNAGYEVV 456
>ref|NP_485549.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB77874.1| (AP003586) ORF_ID:all1508~hypothetical protein [Nostoc sp. PCC
7120]
Length = 179
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/65 (36%), Positives = 38/65 (57%), Gaps = 4/65 (6%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQ-HKDKKVLLHCRAGRRALDAAKSM 76
++VDVRE EY H+PNA I + L+ L+Q + + V+L+C +G R+ ++
Sbjct: 88 MLVDVREASEYRAGHIPNAINIPL---RTLSQNLNQIPRTRPVVLYCSSGYRSAMGVMTL 144
Query: 77 HELGY 81
H LGY
Sbjct: 145 HLLGY 149
>ref|NP_635597.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39521.1| (AE012116) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 158
Score = 40.8 bits (94), Expect = 0.003
Identities = 19/80 (23%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Query: 12 VNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALD 71
+N + +V+D+ ++E+ H+ + +++ + L+ K V++ CR+G +
Sbjct: 64 INSENALVIDLSPTADFEKGHIAGSRNVALAKFDPAGKLLANAKSSPVVVVCRSGNASAG 123
Query: 72 AAKSMHELGYTP-YYLEGNV 90
AAK++ + G+ Y+LEG +
Sbjct: 124 AAKTLKKAGFEQVYWLEGGI 143
>dbj|BAB97445.1| (AP005274) Zn-dependent hydrolases, including glyoxylases
[Corynebacterium glutamicum ATCC 13032]
Length = 489
Score = 40.4 bits (93), Expect = 0.004
Identities = 24/84 (28%), Positives = 48/84 (56%), Gaps = 5/84 (5%)
Query: 9 LEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRR 68
L+E+ ++ +++DVR E EE ++P A + +N L + +D K++ +C++G R
Sbjct: 403 LDELEYD--LLLDVRNRSEVEEGYIPGA--LHINGASVLWNLEKLPRDGKIVSYCKSGTR 458
Query: 69 ALDAAKSMHELGYTPYYLEGNVYD 92
+ AA ++ G+ L+G+ YD
Sbjct: 459 SSIAASTLRNAGFDVVELQGS-YD 481
>ref|NP_343537.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
pir||S73094 hypothetical protein c0127 - Sulfolobus solfataricus
emb|CAA69429.1| (Y08256) orf c01027 [Sulfolobus solfataricus]
gb|AAK42327.1| (AE006822) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 113
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSM- 76
+++D+R EYEE H+P A L ++ E L + +DK+V + C G RA A M
Sbjct: 34 MILDIRTPQEYEEHHIPGAILAPLDYLEHLTELF---EDKEVAVVCEHGNRARYATYGMP 90
Query: 77 HELGYTPYYLEGNV 90
H YY+ G +
Sbjct: 91 HLYKKRAYYMIGGM 104
>ref|NP_658760.1| (NC_003995) RHOD, Rhodanese Homology Domain [Bacillus anthracis
A2012] [Bacillus anthracis str. A2012]
Length = 101
Score = 40.4 bits (93), Expect = 0.004
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 1 MLEDYAISLEEV-----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHK 55
M E I+ EEV N +VDVRE +E +P A I + D DF K
Sbjct: 1 MTEVKTITTEEVQERLENGETLFLVDVREDEEVATGKIPEAVHIKMGDIPNKVDFFD--K 58
Query: 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFE 94
+ + + CR+G R+ + ++E G+ + G + +E
Sbjct: 59 ENEYIFICRSGMRSENVCHYLNEQGFKTVNMVGGMLQYE 97
>ref|NP_603767.1| (NC_003454) Rhodanese-related sulfurtransferases [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95066.1| (AE010595) Rhodanese-related sulfurtransferases [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 240
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/94 (28%), Positives = 47/94 (49%), Gaps = 5/94 (5%)
Query: 6 AISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRA 65
A +E + N ++DVRE EY+ H+ A + + + D L KD+ + ++CR+
Sbjct: 131 AKDIENLLKNKEFLLDVREDYEYQNGHIKGAVNLPLREILSQKDTLP--KDRDIYVYCRS 188
Query: 66 GRRALDAAKSMHELGYTPYY-LEGNVYD--FEKY 96
R+ DA + LG+ + +EG D F +Y
Sbjct: 189 AHRSADAVNFLKSLGFDKVHNIEGGFIDISFNEY 222
>ref|NP_599304.1| (NC_003450) COG0491:Zn-dependent hydrolases, including glyoxylases
[Corynebacterium glutamicum]
Length = 456
Score = 40.4 bits (93), Expect = 0.004
Identities = 24/84 (28%), Positives = 48/84 (56%), Gaps = 5/84 (5%)
Query: 9 LEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRR 68
L+E+ ++ +++DVR E EE ++P A + +N L + +D K++ +C++G R
Sbjct: 370 LDELEYD--LLLDVRNRSEVEEGYIPGA--LHINGASVLWNLEKLPRDGKIVSYCKSGTR 425
Query: 69 ALDAAKSMHELGYTPYYLEGNVYD 92
+ AA ++ G+ L+G+ YD
Sbjct: 426 SSIAASTLRNAGFDVVELQGS-YD 448
>ref|NP_406495.1| (NC_003143) putative pyridine nucleotide-disulphide oxidoreductase
[Yersinia pestis]
emb|CAC92245.1| (AJ414154) putative pyridine nucleotide-disulphide oxidoreductase
[Yersinia pestis]
Length = 548
Score = 40.0 bits (92), Expect = 0.005
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMH 77
I++DVR+ E+ + A I +++ + + Q DKK+L+ C+ G R AA+ +
Sbjct: 470 IIIDVRDEAEFISGSIKTAVNIPLSELRQKLALIPQ--DKKILVTCQVGLRGYIAARILS 527
Query: 78 ELGYTPYYLEGNVYDF 93
+ GYT L+G F
Sbjct: 528 QYGYTVANLDGGYLTF 543
>ref|NP_243786.1| (NC_002570) BH2920~unknown conserved protein [Bacillus
halodurans]
dbj|BAB06639.1| (AP001517) BH2920~unknown conserved protein [Bacillus halodurans]
Length = 123
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/67 (32%), Positives = 37/67 (54%), Gaps = 2/67 (2%)
Query: 15 NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAK 74
++ IVVDVRE +EYE H+P L+ ++ A K+K + CR+G R+ + A
Sbjct: 25 DETIVVDVREPEEYEAGHIPGLPLLPMSSIP--AVVAEMDKEKSYIFVCRSGSRSQNVAL 82
Query: 75 SMHELGY 81
+ + G+
Sbjct: 83 YLKDQGF 89
>ref|NP_629326.1| (NC_003888) putative sulfurylase [Streptomyces coelicolor A3(2)]
emb|CAC01308.1| (AL390968) putative sulfurylase [Streptomyces coelicolor A3(2)]
Length = 392
Score = 40.0 bits (92), Expect = 0.005
Identities = 19/64 (29%), Positives = 38/64 (58%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVRE +E+E + +P A LI N+ + + +DKK++L+C+ G R+ + +
Sbjct: 306 LIDVREPNEFEIVSIPGARLIPKNEFLMGSALENLPQDKKIVLNCKTGVRSAEVLAVLKS 365
Query: 79 LGYT 82
G++
Sbjct: 366 AGFS 369
>ref|NP_640576.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35112.1| (AE011647) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 144
Score = 40.0 bits (92), Expect = 0.005
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 12 VNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALD 71
+N + +V+D+ ++E+ H+ + +++ + L+ K V++ CR+G +
Sbjct: 51 INSENALVIDLSPTADFEKGHIAGSRNVALAKFDPAGKLLANAKASPVVVVCRSGTTSAG 110
Query: 72 AAKSMHELGYTP-YYLEGNV 90
AAK++ + G+ Y+LEG V
Sbjct: 111 AAKTLKKAGFEQVYWLEGGV 130
>ref|NP_602703.1| (NC_003454) Coenzyme A disulfide reductase/ disulfide bond
regulator domain [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94002.1| (AE010492) Coenzyme A disulfide reductase/ disulfide bond regulator
domain [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 810
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/102 (28%), Positives = 49/102 (47%), Gaps = 2/102 (1%)
Query: 9 LEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRR 68
LE N + I++DVRE E L N+ I +++ K + KDK++ +C G R
Sbjct: 460 LENYNEKETIILDVREKLELISGKLNNSINIPLSELRKR--YTELPKDKEIWTYCAVGLR 517
Query: 69 ALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKKN 110
A++ + + GY L G + EK +M + +K+N
Sbjct: 518 GYIASRFLTQKGYKVKNLAGGIKIEEKELIKMQEETFSNKEN 559
>ref|NP_461724.1| (NC_003197) putative rhodanese-related sulfurtransferase
[Salmonella typhimurium LT2]
gb|AAL21683.1| (AE008827) putative rhodanese-related sulfurtransferase [Salmonella
typhimurium LT2]
Length = 175
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVR+ DEY H+P+A L ++ E+ D + + ++++ HC++G+R A +
Sbjct: 21 LIDVRDADEYLREHIPHAQLAPLSRLEQ-GDLPANLRAEQIIFHCQSGKRTSSNAAKLQA 79
Query: 79 LGYTPY--YLEGNVYDFEKYGFRMVYD 103
+ LEG + ++ G + D
Sbjct: 80 IAAPAQVSLLEGGIDGWKAAGLPVTED 106
>ref|NP_457196.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05907.1| (AL627276) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 175
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
++DVR+ DEY H+P+A L ++ E+ D + + ++++ HC++G+R A +
Sbjct: 21 LIDVRDADEYLREHIPHAQLAPLSRLEQ-GDLPANLRAEQIIFHCQSGKRTSSNAAKLQA 79
Query: 79 LGYTPY--YLEGNVYDFEKYGFRMVYD 103
+ LEG + ++ G + D
Sbjct: 80 IAAPAQVSLLEGGIDGWKAAGLPVTED 106
>ref|NP_285627.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75584 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12471.1|AE001863_96 (AE001863) conserved hypothetical protein [Deinococcus radiodurans]
Length = 483
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 2/80 (2%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKS 75
D +V+DVR+ EY+ H+P A + L Q ++++++HC++G R+ AA
Sbjct: 403 DALVLDVRKKTEYDAGHIPGARQLHAGRLPWKLGELPQ--EQEIVVHCQSGARSAAAASF 460
Query: 76 MHELGYTPYYLEGNVYDFEK 95
+ G+ L G +EK
Sbjct: 461 LRARGFNVSELAGGYEAWEK 480
>ref|NP_443020.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S76920 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18832.1| (D90917) ORF_ID:slr1184~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 164
Score = 39.7 bits (91), Expect = 0.007
Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 4/64 (6%)
Query: 19 VVDVRELDEYEELHLPNATLISVNDQEKLADFLSQ-HKDKKVLLHCRAGRRALDAAKSMH 77
+VDVRE+ EY+ H+P A I + L+ L+Q D+KV+ +C G R+ A +++
Sbjct: 81 LVDVREVKEYQAGHIPGAINIPL---RTLSHNLAQIPPDRKVIFYCSTGYRSAMAMMALN 137
Query: 78 ELGY 81
LGY
Sbjct: 138 LLGY 141
>ref|NP_405985.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC91256.1| (AJ414152) conserved hypothetical protein [Yersinia pestis]
Length = 355
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 16 DFIVVDVRELDEYEELHLPNATLI---SVNDQEKLA-DFLSQHKDKKVLLHCRAGRRALD 71
D + VD+R EYE H NA + + +Q +A D L K+K ++++C G R
Sbjct: 149 DTLFVDMRNHYEYEVGHFENAIEVPSDTFREQLPMAVDMLQHDKEKNIVMYCTGGIRCEK 208
Query: 72 AAKSMHELGY-TPYYLEGNVYDFEK 95
A+ M G+ Y++EG + ++ +
Sbjct: 209 ASAYMLHNGFKNVYHVEGGIIEYAR 233
>ref|NP_287880.1| (NC_002655) phage shock protein [Escherichia coli O157:H7 EDL933]
ref|NP_309912.1| (NC_002695) phage shock protein [Escherichia coli O157:H7]
gb|AAG56496.1|AE005376_1 (AE005376) phage shock protein [Escherichia coli O157:H7 EDL933]
dbj|BAB35308.1| (AP002556) phage shock protein [Escherichia coli O157:H7]
Length = 104
Score = 39.3 bits (90), Expect = 0.009
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 20 VDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHEL 79
+DVR ++Y++ H+ A I + + ++ + K+ V ++C AGR++ A + + E+
Sbjct: 24 IDVRVPEQYQQEHVQGAINIPLKEVKERIATVVPDKNDTVKVYCNAGRQSGQAKEILSEM 83
Query: 80 GYTPYYLEGNVYD 92
GYT G + D
Sbjct: 84 GYTHVENAGGLKD 96
>ref|NP_393982.1| (NC_002578) Thiamine biosynthesis ATP pyrophosphatase
(ThiI-related; contains sulfurtransferase domain)
[Thermoplasma acidophilum]
Length = 481
Score = 39.3 bits (90), Expect = 0.009
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 5/70 (7%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKS 75
D +++D+R +YE+ H+PN+ + + D + D K + +++C G ++ A
Sbjct: 391 DAVIIDLRSRSQYEKDHIPNSINLPLGDAINVED-----KGRTYVVYCGMGLQSAYVASM 445
Query: 76 MHELGYTPYY 85
+ G T YY
Sbjct: 446 LRNRGITAYY 455
>sp|Q9HKT9|THII_THEAC Probable thiamine biosynthesis protein thiI
emb|CAC11646.1| (AL445064) thiazole biosynthesis protein Thi I related protein
[Thermoplasma acidophilum]
Length = 469
Score = 39.3 bits (90), Expect = 0.009
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 5/70 (7%)
Query: 16 DFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKS 75
D +++D+R +YE+ H+PN+ + + D + D K + +++C G ++ A
Sbjct: 379 DAVIIDLRSRSQYEKDHIPNSINLPLGDAINVED-----KGRTYVVYCGMGLQSAYVASM 433
Query: 76 MHELGYTPYY 85
+ G T YY
Sbjct: 434 LRNRGITAYY 443
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,111,761
Number of Sequences: 1026957
Number of extensions: 2622871
Number of successful extensions: 6876
Number of sequences better than 1.0e-02: 55
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 6828
Number of HSP's gapped (non-prelim): 58
length of query: 110
length of database: 324,149,939
effective HSP length: 86
effective length of query: 24
effective length of database: 235,831,637
effective search space: 5659959288
effective search space used: 5659959288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)