BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645844|ref|NP_208022.1| hypothetical protein
[Helicobacter pylori 26695]
         (180 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208022.1|  (NC_000915) hypothetical protein [Helicoba...   364  e-100
ref|NP_223869.1|  (NC_000921) putative [Helicobacter pylori ...   354  2e-97
ref|NP_281766.1|  (NC_002163) hypothetical protein Cj0583 [C...    90  1e-17

>ref|NP_208022.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64673 hypothetical protein HP1230 - Helicobacter pylori (strain 26695)
 gb|AAD08280.1| (AE000628) H. pylori predicted coding region HP1230 [Helicobacter
           pylori 26695]
          Length = 180

 Score =  364 bits (935), Expect = e-100
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW 60
           MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW
Sbjct: 1   MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW 60

Query: 61  FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIEN 120
           FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIEN
Sbjct: 61  FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIEN 120

Query: 121 EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL 180
           EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL
Sbjct: 121 EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL 180



>ref|NP_223869.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71844 hypothetical protein jhp1151 - Helicobacter pylori (strain J99)
 gb|AAD06724.1| (AE001542) putative [Helicobacter pylori J99]
          Length = 180

 Score =  354 bits (909), Expect = 2e-97
 Identities = 173/180 (96%), Positives = 177/180 (98%)

Query: 1   MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW 60
           MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSR W
Sbjct: 1   MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRW 60

Query: 61  FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIEN 120
           FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIE+TYQNPMFWHVG++EN
Sbjct: 61  FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVEN 120

Query: 121 EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL 180
           EGLKT+LLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFS LYNKV L
Sbjct: 121 EGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL 180



>ref|NP_281766.1| (NC_002163) hypothetical protein Cj0583 [Campylobacter jejuni]
 pir||F81405 hypothetical protein Cj0583 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB75219.1| (AL139075) hypothetical protein Cj0583 [Campylobacter jejuni]
          Length = 178

 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 55/184 (29%), Positives = 97/184 (51%), Gaps = 11/184 (5%)

Query: 1   MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW 60
           M +F  +  E +R+ G F+A    WLE  R  +A L+A  + ++L G + ++  D  R W
Sbjct: 1   MSDFLSFTLENIRNGGAFMA----WLESRRLEWAPLMAARLKYLLEGRTFVLMCDEQRSW 56

Query: 61  FLNYILSNLNPKDLKERPLLSVIDFNA---SSFYPKNDANLSLATIEMTYQNP-MFWHVG 116
           +  Y L N+N K    RP+L  +  N+          D  L    +++++ N  +++++G
Sbjct: 57  YEEYFLKNINSK--ATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDISFPNGYVYFYIG 114

Query: 117 KIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYN 176
              ++    I  S+  S LWLF+E  +D   L   D  LD KL+ L++LF+ +L ++L++
Sbjct: 115 SA-SDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLYQLFDVSLDAILFS 173

Query: 177 KVTL 180
           KV L
Sbjct: 174 KVQL 177



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,982,606
Number of Sequences: 1026957
Number of extensions: 4353410
Number of successful extensions: 10654
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10650
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 324,149,939
effective HSP length: 113
effective length of query: 67
effective length of database: 208,103,798
effective search space: 13942954466
effective search space used: 13942954466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)