BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645847|ref|NP_208025.1| hypothetical protein
[Helicobacter pylori 26695]
         (153 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208025.1|  (NC_000915) hypothetical protein [Helicoba...   306  4e-83
ref|NP_223872.1|  (NC_000921) putative [Helicobacter pylori ...   297  3e-80

>ref|NP_208025.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64674 hypothetical protein HP1233 - Helicobacter pylori (strain 26695)
 gb|AAD08281.1| (AE000628) H. pylori predicted coding region HP1233 [Helicobacter
           pylori 26695]
          Length = 153

 Score =  306 bits (785), Expect = 4e-83
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFDPDKRETYGF 60
           MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFDPDKRETYGF
Sbjct: 1   MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFDPDKRETYGF 60

Query: 61  LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLH 120
           LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLH
Sbjct: 61  LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLH 120

Query: 121 KKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL 153
           KKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL
Sbjct: 121 KKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL 153



>ref|NP_223872.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71841 hypothetical protein jhp1154 - Helicobacter pylori (strain J99)
 gb|AAD06739.1| (AE001543) putative [Helicobacter pylori J99]
          Length = 153

 Score =  297 bits (760), Expect = 3e-80
 Identities = 145/153 (94%), Positives = 150/153 (97%)

Query: 1   MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFDPDKRETYGF 60
           MAVSSINQFDSNLYGLLNAKSAPKEDLAPIE  EK+EREKKDAPTENLPF+PDKRETYGF
Sbjct: 1   MAVSSINQFDSNLYGLLNAKSAPKEDLAPIEGAEKIEREKKDAPTENLPFNPDKRETYGF 60

Query: 61  LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLH 120
           LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQP+NGLH
Sbjct: 61  LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPVNGLH 120

Query: 121 KKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL 153
           KKA QTFNATNHNAFLQRYQNAYNNPS+MDV+L
Sbjct: 121 KKAFQTFNATNHNAFLQRYQNAYNNPSSMDVVL 153



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,132,397
Number of Sequences: 1026957
Number of extensions: 3742817
Number of successful extensions: 8042
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8040
Number of HSP's gapped (non-prelim): 2
length of query: 153
length of database: 324,149,939
effective HSP length: 110
effective length of query: 43
effective length of database: 211,184,669
effective search space: 9080940767
effective search space used: 9080940767
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 92 (40.0 bits)