BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645850|ref|NP_208028.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208028.1| (NC_000915) hypothetical protein [Helicoba... 367 e-101
ref|NP_223875.1| (NC_000921) putative [Helicobacter pylori ... 363 e-100
ref|NP_282633.1| (NC_002163) hypothetical protein Cj1495c [... 172 1e-42
ref|NP_214199.1| (NC_000918) putative protein [Aquifex aeol... 85 3e-16
>ref|NP_208028.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64674 hypothetical protein HP1236 - Helicobacter pylori (strain 26695)
gb|AAD08287.1| (AE000629) H. pylori predicted coding region HP1236 [Helicobacter
pylori 26695]
Length = 183
Score = 367 bits (942), Expect = e-101
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL
Sbjct: 1 MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
Query: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV
Sbjct: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
Query: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK
Sbjct: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
Query: 181 GFL 183
GFL
Sbjct: 181 GFL 183
>ref|NP_223875.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71842 hypothetical protein jhp1157 - Helicobacter pylori (strain J99)
gb|AAD06734.1| (AE001543) putative [Helicobacter pylori J99]
Length = 183
Score = 363 bits (931), Expect = e-100
Identities = 181/183 (98%), Positives = 182/183 (98%)
Query: 1 MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
MRLKLTHI HISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL
Sbjct: 1 MRLKLTHITHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
Query: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERC+DLSHQILNKILDEDLIMFSV
Sbjct: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCSDLSHQILNKILDEDLIMFSV 120
Query: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK
Sbjct: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
Query: 181 GFL 183
GFL
Sbjct: 181 GFL 183
>ref|NP_282633.1| (NC_002163) hypothetical protein Cj1495c [Campylobacter jejuni]
pir||D81296 hypothetical protein Cj1495c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73917.1| (AL139078) hypothetical protein Cj1495c [Campylobacter jejuni]
Length = 183
Score = 172 bits (437), Expect = 1e-42
Identities = 83/181 (45%), Positives = 129/181 (70%)
Query: 1 MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
MR+KL HI +I++K+ D +S +E+K E L I +LEK + E +DE+ +ELL
Sbjct: 1 MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEKDILNERKLDERVKELL 60
Query: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
E+ DE+E M++D + +FW++K+++A + L E+R N L+HQIL ++++ D I F V
Sbjct: 61 EQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHLAHQILEELVENDYINFIV 120
Query: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
SEN ++NLI+ SI++Y K YE +E+EV+EKI +YK K GS+EY+L+FE+LY+EELR+K
Sbjct: 121 SENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIPGSEEYDLIFEKLYQEELRKK 180
Query: 181 G 181
G
Sbjct: 181 G 181
>ref|NP_214199.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||G70450 hypothetical protein aq_1752 - Aquifex aeolicus
gb|AAC07599.1| (AE000754) putative protein [Aquifex aeolicus]
Length = 183
Score = 85.1 bits (209), Expect = 3e-16
Identities = 45/158 (28%), Positives = 95/158 (59%), Gaps = 1/158 (0%)
Query: 24 LLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKR 83
+LEL+ P ++I + +++ ++E ++E+A+ +L EN + +E +D R F +KR
Sbjct: 25 ILELEDPATFKKKIIS-LFKEADREEKELEEKAKAVLRENLEVLERENIDYRTAFLAVKR 83
Query: 84 QIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESI 143
++A++ ++ ER N + ++I++ I+ ++ + +IR I + + K E I
Sbjct: 84 KLAEEMNINVDRRERLNQIINRIMDLIMKDESVEIYEDPPVIRKKIREIVLGALKIEEEI 143
Query: 144 ENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRKG 181
E V ++IK Y R L GS E++++++R+YE+EL+++G
Sbjct: 144 EKTVRQRIKKYSRDLLEGSPEWQILWKRIYEDELKKRG 181
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,246,732
Number of Sequences: 1026957
Number of extensions: 4642598
Number of successful extensions: 18571
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18566
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)