BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645856|ref|NP_208034.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(76 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208034.1| (NC_000915) conserved hypothetical protein... 155 9e-38
ref|NP_223881.1| (NC_000921) putative [Helicobacter pylori ... 155 1e-37
ref|NP_281636.1| (NC_002163) hypothetical protein Cj0449c [... 70 4e-12
ref|NP_246507.1| (NC_002663) unknown [Pasteurella multocida... 67 6e-11
ref|NP_274092.1| (NC_003112) conserved hypothetical protein... 56 8e-08
ref|NP_287734.1| (NC_002655) ydcH gene product [Escherichia... 42 0.002
ref|NP_415943.1| (NC_000913) orf, hypothetical protein [Esc... 42 0.002
ref|NP_542045.1| (NC_003318) Hypothetical Cytosolic Protein... 41 0.003
>ref|NP_208034.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64675 conserved hypothetical protein HP1242 - Helicobacter pylori
(strain 26695)
gb|AAD08286.1| (AE000629) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 76
Score = 155 bits (392), Expect = 9e-38
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI
Sbjct: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
Query: 61 HSMIIEYREKQKSERA 76
HSMIIEYREKQKSERA
Sbjct: 61 HSMIIEYREKQKSERA 76
>ref|NP_223881.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71840 hypothetical protein jhp1163 - Helicobacter pylori (strain J99)
gb|AAD06749.1| (AE001544) putative [Helicobacter pylori J99]
Length = 76
Score = 155 bits (391), Expect = 1e-37
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAE+SHMKKQKLKLKDEI
Sbjct: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEISHMKKQKLKLKDEI 60
Query: 61 HSMIIEYREKQKSERA 76
HSMIIEYREKQKSERA
Sbjct: 61 HSMIIEYREKQKSERA 76
>ref|NP_281636.1| (NC_002163) hypothetical protein Cj0449c [Campylobacter jejuni]
pir||D81389 hypothetical protein Cj0449c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75087.1| (AL139075) hypothetical protein Cj0449c [Campylobacter jejuni]
Length = 71
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQ--QNASDAEVSHMKKQKLKLKD 58
M HE+R+ +S LK + HFDK+F++HN+LDD IK AE+ + S E+S +KK+KL +KD
Sbjct: 1 MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLSSMEISTLKKEKLHVKD 60
Query: 59 EIHSMIIEYRE 69
E+ + Y++
Sbjct: 61 ELSQYLANYKK 71
>ref|NP_246507.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03652.1| (AE006194) unknown [Pasteurella multocida]
Length = 70
Score = 66.6 bits (161), Expect = 6e-11
Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQ--QNASDAEVSHMKKQKLKLKD 58
MF EFRD IS LK + HF+++FEKHN+LD IK E + + EV ++KK+KL+LKD
Sbjct: 1 MFPEFRDLISKLKLEDAHFNRLFEKHNELDHRIKNIEANIELGTPQEVENLKKEKLRLKD 60
Query: 59 EIHSMIIEYR 68
EI+ ++ +++
Sbjct: 61 EIYVILKKHK 70
>ref|NP_274092.1| (NC_003112) conserved hypothetical protein [Neisseria
meningitidis MC58]
ref|NP_284013.1| (NC_003116) hypothetical protein NMA1258 [Neisseria meningitidis
Z2491]
pir||E81126 conserved hypothetical protein NMB1059, NMA1258 [imported] -
Neisseria meningitidis (group B strain MD58, group A
strain Z2491)
gb|AAF41455.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis
MC58]
emb|CAB84513.1| (AL162755) hypothetical protein NMA1258 [Neisseria meningitidis
Z2491]
Length = 72
Score = 56.2 bits (134), Expect = 8e-08
Identities = 30/66 (45%), Positives = 43/66 (64%), Gaps = 2/66 (3%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIK-TAEQQNASDAE-VSHMKKQKLKLKD 58
MF E+RD IS LK N F ++F++HN+LDD I S AE + +KK KLKLKD
Sbjct: 1 MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSGAETIDELKKAKLKLKD 60
Query: 59 EIHSMI 64
E+++++
Sbjct: 61 ELYAIL 66
>ref|NP_287734.1| (NC_002655) ydcH gene product [Escherichia coli O157:H7 EDL933]
ref|NP_310058.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG56348.1|AE005363_5 (AE005363) ydcH gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB35454.1| (AP002557) hypothetical protein [Escherichia coli O157:H7]
Length = 55
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 22 IFEKHNQLDDDI--KTAEQQNASDAEVSHMKKQKLKLKDEI 60
+F+KHN+LD +I K +AEV MKKQKL+LKDE+
Sbjct: 3 LFDKHNKLDHEIARKEGSDDRGYNAEVVRMKKQKLQLKDEM 43
>ref|NP_415943.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P46135|YDCH_ECOLI Hypothetical protein ydcH
pir||E64894 ydcH protein - Escherichia coli
dbj|BAA15047.1| (D90781) ORF_ID:o270#16; similar to [SwissProt Accession Number
P46135] [Escherichia coli]
dbj|BAA15056.1| (D90782) ORF_ID:o270#16; similar to [SwissProt Accession Number
P46135] [Escherichia coli]
gb|AAC74508.1| (AE000240) orf, hypothetical protein [Escherichia coli K12]
Length = 55
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 22 IFEKHNQLDDDIKTAEQQNAS--DAEVSHMKKQKLKLKDEIHSMIIEYREKQ 71
+F+KHN+LD +I E + +AEV MKKQKL+LKDE+ ++ + K+
Sbjct: 3 LFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQESVKE 54
>ref|NP_542045.1| (NC_003318) Hypothetical Cytosolic Protein [Brucella melitensis]
gb|AAL54309.1| (AE009739) Hypothetical Cytosolic Protein [Brucella melitensis]
Length = 79
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQ--QNASDAEVSHMKKQKLKLKDEIHSMI 64
+ I LKA + HF +I E+ + ++D I AE Q S E ++++KQ+L LKD+I S +
Sbjct: 17 EAIHALKAKDAHFARILEESDSVNDLIHRAETNIQPVSQEEETNLRKQRLALKDKIASAL 76
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.313 0.128 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,065,162
Number of Sequences: 1026957
Number of extensions: 1381647
Number of successful extensions: 6474
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6463
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 324,149,939
effective HSP length: 52
effective length of query: 24
effective length of database: 270,748,175
effective search space: 6497956200
effective search space used: 6497956200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)