BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645861|ref|NP_208039.1| hypothetical protein
[Helicobacter pylori 26695]
(340 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208039.1| (NC_000915) hypothetical protein [Helicoba... 678 0.0
ref|NP_223886.1| (NC_000921) putative [Helicobacter pylori ... 647 0.0
ref|NP_281813.1| (NC_002163) hypothetical protein Cj0630c [... 95 1e-18
>ref|NP_208039.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
sp|O25842|YC47_HELPY Protein HP1247
pir||G64675 hypothetical protein HP1247 - Helicobacter pylori (strain 26695)
gb|AAD08299.1| (AE000630) H. pylori predicted coding region HP1247 [Helicobacter
pylori 26695]
Length = 340
Score = 678 bits (1750), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQ 60
MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQ
Sbjct: 1 MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQ 60
Query: 61 IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT 120
IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT
Sbjct: 61 IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT 120
Query: 121 TKYKYTSDAIVKFFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALF 180
TKYKYTSDAIVKFFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALF
Sbjct: 121 TKYKYTSDAIVKFFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALF 180
Query: 181 EINNEDLGVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSALDIYDY 240
EINNEDLGVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSALDIYDY
Sbjct: 181 EINNEDLGVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSALDIYDY 240
Query: 241 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRL 300
LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRL
Sbjct: 241 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRL 300
Query: 301 KEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTSIQKIINP 340
KEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTSIQKIINP
Sbjct: 301 KEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTSIQKIINP 340
>ref|NP_223886.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJY0|YC47_HELPJ Protein JHP1168
pir||G71840 hypothetical protein jhp1168 - Helicobacter pylori (strain J99)
gb|AAD06742.1| (AE001544) putative [Helicobacter pylori J99]
Length = 340
Score = 647 bits (1669), Expect = 0.0
Identities = 324/340 (95%), Positives = 329/340 (96%)
Query: 1 MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQ 60
MYRKDLD+YLKQRLPKAVFLYGEFDFFIHYYIQTISALFK +NPD ETSLFYASDYEKSQ
Sbjct: 1 MYRKDLDNYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKGNNPDTETSLFYASDYEKSQ 60
Query: 61 IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT 120
IATLLEQDSLFGGSSLV+LKLDFALHKKFKENDIN FLKALERPSHNRLIIGLYNAKSDT
Sbjct: 61 IATLLEQDSLFGGSSLVILKLDFALHKKFKENDINPFLKALERPSHNRLIIGLYNAKSDT 120
Query: 121 TKYKYTSDAIVKFFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALF 180
TKYKYTS+ IVKFFQKSPLKDEAIC RFF PK WESLKFLQERANFLHLDISGHLLNALF
Sbjct: 121 TKYKYTSEIIVKFFQKSPLKDEAICVRFFTPKAWESLKFLQERANFLHLDISGHLLNALF 180
Query: 181 EINNEDLGVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSALDIYDY 240
EINNEDL VSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKS LDIYDY
Sbjct: 181 EINNEDLSVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY 240
Query: 241 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRL 300
LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEI ENYAKNALRL
Sbjct: 241 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIVENYAKNALRL 300
Query: 301 KEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTSIQKIINP 340
KEAGYKRVFEIFRLWH+QSMQGQKELGFLYLT IQKIINP
Sbjct: 301 KEAGYKRVFEIFRLWHLQSMQGQKELGFLYLTPIQKIINP 340
>ref|NP_281813.1| (NC_002163) hypothetical protein Cj0630c [Campylobacter jejuni]
pir||E81411 hypothetical protein Cj0630c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75266.1| (AL139075) hypothetical protein Cj0630c [Campylobacter jejuni]
Length = 321
Score = 95.1 bits (235), Expect = 1e-18
Identities = 80/313 (25%), Positives = 137/313 (43%), Gaps = 27/313 (8%)
Query: 1 MYRKDLDHYL-KQRLPKAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKS 59
MYRK+L L K +P FLYG +F Y + I +K D ET + +Y +
Sbjct: 1 MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPD----ETLKLFFEEYNFT 56
Query: 60 QIATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSD 119
+ + L SLF L+ +K KK D+ + ++ + + N ++ LY+ S
Sbjct: 57 RASDFLSAGSLFSEKKLLEIKTS----KKIPTKDLKVLVELCKNNTDNFFLLELYDESSK 112
Query: 120 TTKY-KYTSDAIVKFFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNA 178
+ K S V+FF+ + K E ++ L +A L ++I+ + L
Sbjct: 113 QSDIEKIFSPHFVRFFKANGAK--------------EGVELLSIKAKQLGVEITQNALFT 158
Query: 179 LFEINNEDLGVSFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSALDIY 238
LF +E+L ++ ++L+K + L + S N G + LKK
Sbjct: 159 LFTSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFES---FFDKILKKQDFKSE 215
Query: 239 DYLLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNAL 298
+ + + ++ L FY+LF + K G +D KE+LGY PP ++ +N + A
Sbjct: 216 LEKILDNFNEIALINSLYNSFYRLFKIALYAKINGKIDFKELLGYTPPPQVGQNLSSQAF 275
Query: 299 RLKEAGYKRVFEI 311
LK YK +F +
Sbjct: 276 SLKIEQYKEIFTL 288
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.142 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,663,561
Number of Sequences: 1026957
Number of extensions: 8480603
Number of successful extensions: 17354
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17351
Number of HSP's gapped (non-prelim): 3
length of query: 340
length of database: 324,149,939
effective HSP length: 122
effective length of query: 218
effective length of database: 198,861,185
effective search space: 43351738330
effective search space used: 43351738330
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)