BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645864|ref|NP_208042.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208042.1| (NC_000915) hypothetical protein [Helicoba... 377 e-104
ref|NP_223889.1| (NC_000921) putative [Helicobacter pylori ... 321 3e-87
ref|NP_655814.1| (NC_003995) NLPC_P60, NLP/P60 family [Baci... 45 6e-04
ref|NP_178573.1| (NM_126528) hypothetical protein [Arabidop... 44 8e-04
ref|NP_441280.1| (NC_000911) unknown protein [Synechocystis... 44 8e-04
gb|AAF06005.1| (AF192766) enterotoxin [Bacillus cereus] 44 0.001
gb|AAF06006.1| (AF192767) enterotoxin [Bacillus cereus] 44 0.001
ref|NP_224908.1| (NC_000922) FHA domain; (homology to adeny... 44 0.001
emb|CAC87578.1| (AJ316251) surface protein [Theileria annul... 43 0.002
ref|NP_345169.1| (NC_003028) zinc metalloprotease ZmpB, put... 43 0.002
ref|NP_655767.1| (NC_003995) Peptidase_M37, Peptidase famil... 43 0.002
emb|CAC87579.1| (AJ316252) surface protein [Theileria annul... 42 0.005
>ref|NP_208042.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64676 hypothetical protein HP1250 - Helicobacter pylori (strain 26695)
gb|AAD08300.1| (AE000630) H. pylori predicted coding region HP1250 [Helicobacter
pylori 26695]
Length = 192
Score = 377 bits (969), Expect = e-104
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVL 60
MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVL
Sbjct: 1 MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVL 60
Query: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTP 120
SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTP
Sbjct: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTP 120
Query: 121 TTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHETK 180
TTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHETK
Sbjct: 121 TTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHETK 180
Query: 181 GYVFLKLLKKAE 192
GYVFLKLLKKAE
Sbjct: 181 GYVFLKLLKKAE 192
>ref|NP_223889.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71841 hypothetical protein jhp1171 - Helicobacter pylori (strain J99)
gb|AAD06745.1| (AE001544) putative [Helicobacter pylori J99]
Length = 219
Score = 321 bits (822), Expect = 3e-87
Identities = 170/220 (77%), Positives = 180/220 (81%), Gaps = 29/220 (13%)
Query: 1 MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVL 60
MKTEMKS LKLF +PLLVVLAFMLLYAL HA LGFYVKKDSAP+SPNVEK+ETERQN
Sbjct: 1 MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTF 60
Query: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQE-------------------------- 94
SPK EEANATTTATE++PTKDT PPLDTA QKQE
Sbjct: 61 SPK-EEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIK 119
Query: 95 --TKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIL 152
TKQEQEKEN+PKQ+SV PVQN+QKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKI+
Sbjct: 120 QETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKII 179
Query: 153 GLLLKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE 192
G L+KNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE
Sbjct: 180 GSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE 219
>ref|NP_655814.1| (NC_003995) NLPC_P60, NLP/P60 family [Bacillus anthracis A2012]
[Bacillus anthracis str. A2012]
Length = 420
Score = 44.7 bits (104), Expect = 6e-04
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 113 VQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAE 172
V KT TT G Y V VS +NVR PST +LG + K K+V+V+ DW +
Sbjct: 115 VTTGGKTGTTVQQGTGT--YTVNVSSLNVRTGPSTSHTVLGSVNKGKTVQVVSEVQDWFK 172
Query: 173 IEFSHETKGYV 183
I F+ T GYV
Sbjct: 173 INFNGGT-GYV 182
>ref|NP_178573.1| (NM_126528) hypothetical protein [Arabidopsis thaliana]
gb|AAD25586.1| (AC007211) hypothetical protein [Arabidopsis thaliana]
Length = 292
Score = 44.3 bits (103), Expect = 8e-04
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 49 EKTETERQNGVLSPKQEEANATTTATEES-PTKDTAPPLDTAAQKQETKQEQEKENEP-- 105
E ETE Q + +E N T +ES P K+ +T +ETK++ E N+
Sbjct: 113 EHDETEDQEAYVILSDDEDNGTAPTEKESQPQKE-----ETTEVPRETKKDDEDVNQTPL 167
Query: 106 --KQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKV 163
+++ +P Q++ +TP TP+M + + ++ GV V+ + K K++ LL + K+
Sbjct: 168 STQEEEIPQGQSSLQTPLTPVMLSQEVMEEI---GVKVKKW--AKNKLIRDLLSSLE-KI 221
Query: 164 LEIQNDWAEIEFSHETKGYVFLKLLKKA 191
L + W ++E + LKKA
Sbjct: 222 LWPDSKWQKVEIWEMWDEKKYKLALKKA 249
>ref|NP_441280.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S75098 hypothetical protein sll0242 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17960.1| (D90910) ORF_ID:sll0242~unknown protein [Synechocystis sp. PCC
6803]
Length = 929
Score = 44.3 bits (103), Expect = 8e-04
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 42 APISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEK 101
AP P + T ++ +++PKQ TT + +P K T PP Q+ TK
Sbjct: 686 APTKPTITPQRTPAKS-IITPKQTPTKTATTP-QRTPAKSTPPP-----QQTPTKTATTP 738
Query: 102 ENEPKQDSVPPVQNNQKTPTTPLMGKKPL-EYKVAVSGVN 140
+ P + + PP Q KT TTP + +Y++ + VN
Sbjct: 739 QQTPAKSTPPPQQTPTKTATTPQQTNSTIPKYQIRQNVVN 778
>gb|AAF06005.1| (AF192766) enterotoxin [Bacillus cereus]
Length = 419
Score = 43.9 bits (102), Expect = 0.001
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 113 VQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAE 172
V KT TT G Y V VS +NVR PST +LG + K K+V+V+ DW +
Sbjct: 115 VTTGGKTGTTVQQGTGT--YTVNVSSLNVRTGPSTSHTVLGSVNKGKTVQVVGEVQDWFK 172
Query: 173 IEFSHETKGYV 183
I F+ T GYV
Sbjct: 173 INFNGGT-GYV 182
>gb|AAF06006.1| (AF192767) enterotoxin [Bacillus cereus]
Length = 431
Score = 43.9 bits (102), Expect = 0.001
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 113 VQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAE 172
V KT TT G Y V VS +NVR PST +LG + K K+V+V+ DW +
Sbjct: 120 VTTGGKTGTTVQQGTGT--YTVNVSSLNVRTGPSTSHTVLGSVNKGKTVQVVGEVQDWFK 177
Query: 173 IEFSHETKGYV 183
I F+ T GYV
Sbjct: 178 INFNGGT-GYV 187
>ref|NP_224908.1| (NC_000922) FHA domain; (homology to adenylate cyclase)
[Chlamydophila pneumoniae CWL029]
ref|NP_300768.1| (NC_002491) FHA domain [Chlamydophila pneumoniae J138]
ref|NP_444586.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||H72046 Fha domain (homolog to adenylate cyclase) - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18851.1| (AE001652) FHA domain; (homology to adenylate cyclase)
[Chlamydophila pneumoniae CWL029]
gb|AAF37929.1| (AE002167) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98919.1| (AP002547) FHA domain [Chlamydophila pneumoniae J138]
Length = 845
Score = 43.9 bits (102), Expect = 0.001
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 38 KKDSAPISPNVEKTETERQNGVLS-----------PKQEEANATTTATEESPTKDTAPPL 86
K+ +A SP E+ + QN ++ PK E + TA +E+P K+ P+
Sbjct: 204 KEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPKSAEPSLKNTARDETPLKEN-KPV 262
Query: 87 DTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVA 135
+ A K+ T EK+++P++ S + K TPL +K E K A
Sbjct: 263 EEKANKKATPDSPEKKDQPEEGS---KKEGSKIEATPLDSQKESEDKEA 308
>emb|CAC87578.1| (AJ316251) surface protein [Theileria annulata]
Length = 313
Score = 43.1 bits (100), Expect = 0.002
Identities = 28/102 (27%), Positives = 47/102 (45%), Gaps = 13/102 (12%)
Query: 33 LGFYVKKDSAPISPN-----VEKTETERQNGVLSPKQEEANATTTAT--EESPTKDTAPP 85
+ F D P+ PN VE+++ + Q + P+Q +T E+ T + P
Sbjct: 32 IDFDPNDDQQPLDPNQLIDQVEQSQEDTQQEPIEPQQPTQPSTEPEELEPETVTVEVPEP 91
Query: 86 LDTAAQKQETKQEQEKENEPKQDSVP------PVQNNQKTPT 121
+ + K+ T+ E++K EP+ VP PVQ + TPT
Sbjct: 92 VTSEEPKESTQTEEQKHEEPEASPVPEPVDEPPVQPTESTPT 133
>ref|NP_345169.1| (NC_003028) zinc metalloprotease ZmpB, putative [Streptococcus
pneumoniae TIGR4]
gb|AAF31454.1|AF221126_3 (AF221126) putative zinc metalloprotease [Streptococcus pneumoniae]
gb|AAK74809.1| (AE007376) zinc metalloprotease ZmpB, putative [Streptococcus
pneumoniae TIGR4]
Length = 1881
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 40 DSAPISPNVEKTETERQNGV-LSPKQEEANATTTATEE-SPTKDTA------PPLDTAAQ 91
+ AP+ P + E + V +PKQEE+ T A E P ++T P ++T A
Sbjct: 266 EKAPVEPEKQPEAPEEEKAVEETPKQEESTPDTKAEETVEPKEETVNQSIEQPKVETPAV 325
Query: 92 KQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKI 151
+++T+ +E + E + V P + +++ PT P+ +K E V P K K
Sbjct: 326 EKQTEPTEEPKVEQAGEPVAP-REDEQAPTAPVEPEKQPEVPEEEKAVEETPKPEDKIKG 384
Query: 152 LG 153
+G
Sbjct: 385 IG 386
>ref|NP_655767.1| (NC_003995) Peptidase_M37, Peptidase family M23/M37 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 564
Score = 42.7 bits (99), Expect = 0.002
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 115 NNQKTPTT--PLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAE 172
N P T P G +Y V V+ +NVR+ T ++G L K V+VL QN W +
Sbjct: 340 NTPSKPETSNPSTGATVGDYYVNVNVLNVRSGAGTNYDVIGALSKGIKVQVLFEQNGWGK 399
Query: 173 IEFSHETKGYVFLKLLKK 190
I ++ +T GYV K L K
Sbjct: 400 INYNGKT-GYVSSKFLSK 416
>emb|CAC87579.1| (AJ316252) surface protein [Theileria annulata]
Length = 132
Score = 41.6 bits (96), Expect = 0.005
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 33 LGFYVKKDSAPISPN-----VEKTETERQNGVLSPKQEEANATT-------TATEESPTK 80
+ F D P+ PN +E+++ + Q + P+Q +T T T E P
Sbjct: 7 IDFDPNDDQQPLDPNQLMDQIEQSQEDTQQEPIEPQQPTQPSTEPEELEPETVTVEVPEP 66
Query: 81 DTAPPLDTAAQKQETKQEQEKENEPKQDSV--PPVQNNQKTPT 121
T+ + Q +E + Q+ + EP + V PPVQ + TPT
Sbjct: 67 VTSEEPKESTQTEEPTETQDSKQEPTEQPVDEPPVQPTESTPT 109
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,158,605
Number of Sequences: 1026957
Number of extensions: 4858187
Number of successful extensions: 44324
Number of sequences better than 1.0e-02: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 44293
Number of HSP's gapped (non-prelim): 29
length of query: 192
length of database: 324,149,939
effective HSP length: 114
effective length of query: 78
effective length of database: 207,076,841
effective search space: 16151993598
effective search space used: 16151993598
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 94 (40.8 bits)