BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645878|ref|NP_208056.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208056.1| (NC_000915) hypothetical protein [Helicoba... 153 5e-37
ref|NP_223903.1| (NC_000921) putative NADH oxidoreductase I... 150 3e-36
ref|NP_282703.1| (NC_002163) hypothetical protein Cj1575c [... 78 2e-14
>ref|NP_208056.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64677 hypothetical protein HP1264 - Helicobacter pylori (strain 26695)
gb|AAD08321.1| (AE000631) H. pylori predicted coding region HP1264 [Helicobacter
pylori 26695]
Length = 76
Score = 153 bits (386), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS
Sbjct: 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
Query: 61 LRFNQADWTIVVRKKA 76
LRFNQADWTIVVRKKA
Sbjct: 61 LRFNQADWTIVVRKKA 76
>ref|NP_223903.1| (NC_000921) putative NADH oxidoreductase I [Helicobacter pylori
J99]
pir||F71838 probable nadh oxidoreductase I - Helicobacter pylori (strain J99)
gb|AAD06771.1| (AE001545) putative NADH oxidoreductase I [Helicobacter pylori
J99]
Length = 76
Score = 150 bits (379), Expect = 3e-36
Identities = 75/76 (98%), Positives = 75/76 (98%)
Query: 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
MKRFDLRPLKA IFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS
Sbjct: 1 MKRFDLRPLKADIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
Query: 61 LRFNQADWTIVVRKKA 76
LRFNQADWTIVVRKKA
Sbjct: 61 LRFNQADWTIVVRKKA 76
>ref|NP_282703.1| (NC_002163) hypothetical protein Cj1575c [Campylobacter jejuni]
pir||E81252 hypothetical protein Cj1575c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73563.1| (AL139079) hypothetical protein Cj1575c [Campylobacter jejuni]
Length = 75
Score = 77.8 bits (190), Expect = 2e-14
Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
M+R DLR K +FE L ++I KE + EV + +FE+GDFS + KS F++ +G ELLNS
Sbjct: 1 MRRVDLRKSKE-LFEDLAQII-KEAKQGEVLVVLFEIGDFSPVEKSFSFVKEQGCELLNS 58
Query: 61 LRFNQADWTIVVRKK 75
L+FNQ DWTIV++K+
Sbjct: 59 LKFNQVDWTIVIKKE 73
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,058,680
Number of Sequences: 1026957
Number of extensions: 1304042
Number of successful extensions: 3607
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3604
Number of HSP's gapped (non-prelim): 3
length of query: 76
length of database: 324,149,939
effective HSP length: 52
effective length of query: 24
effective length of database: 270,748,175
effective search space: 6497956200
effective search space used: 6497956200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)