BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645879|ref|NP_208057.1| hypothetical protein
[Helicobacter pylori 26695]
         (328 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208057.1|  (NC_000915) hypothetical protein [Helicoba...   644  0.0
ref|NP_223904.1|  (NC_000921) putative NADH oxidoreductase I...   593  e-169

>ref|NP_208057.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64678 hypothetical protein HP1265 - Helicobacter pylori (strain 26695)
 gb|AAD08320.1| (AE000631) H. pylori predicted coding region HP1265 [Helicobacter
           pylori 26695]
          Length = 328

 Score =  644 bits (1662), Expect = 0.0
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MSGFNPLNSPLVASSSLSLKEAYYLEKLSLKKGFKIHYKMTKDSLNLLEKSDLCVLFGGF 60
           MSGFNPLNSPLVASSSLSLKEAYYLEKLSLKKGFKIHYKMTKDSLNLLEKSDLCVLFGGF
Sbjct: 1   MSGFNPLNSPLVASSSLSLKEAYYLEKLSLKKGFKIHYKMTKDSLNLLEKSDLCVLFGGF 60

Query: 61  SNACLNENERWILESISHSKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI 120
           SNACLNENERWILESISHSKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI
Sbjct: 61  SNACLNENERWILESISHSKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI 120

Query: 121 LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKRALVLNREITKHANNAF 180
           LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKRALVLNREITKHANNAF
Sbjct: 121 LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKRALVLNREITKHANNAF 180

Query: 181 LYTLLSELQNYLEILHIPCYDSSATTAFYDFKDQEWLLETAFKEGILPFKSQLQSKDLEL 240
           LYTLLSELQNYLEILHIPCYDSSATTAFYDFKDQEWLLETAFKEGILPFKSQLQSKDLEL
Sbjct: 181 LYTLLSELQNYLEILHIPCYDSSATTAFYDFKDQEWLLETAFKEGILPFKSQLQSKDLEL 240

Query: 241 LERISEANGSFVYVSYKSLETPKLSFSKQFKIANKIEHSKAGFQISNQTLECELEENPHL 300
           LERISEANGSFVYVSYKSLETPKLSFSKQFKIANKIEHSKAGFQISNQTLECELEENPHL
Sbjct: 241 LERISEANGSFVYVSYKSLETPKLSFSKQFKIANKIEHSKAGFQISNQTLECELEENPHL 300

Query: 301 KGLIAILEGAFFDAYPYIPILSHSQGIS 328
           KGLIAILEGAFFDAYPYIPILSHSQGIS
Sbjct: 301 KGLIAILEGAFFDAYPYIPILSHSQGIS 328



>ref|NP_223904.1| (NC_000921) putative NADH oxidoreductase I [Helicobacter pylori
           J99]
 pir||G71838 probable nadh oxidoreductase I - Helicobacter pylori (strain J99)
 gb|AAD06772.1| (AE001545) putative NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 328

 Score =  593 bits (1529), Expect = e-169
 Identities = 302/328 (92%), Positives = 315/328 (95%)

Query: 1   MSGFNPLNSPLVASSSLSLKEAYYLEKLSLKKGFKIHYKMTKDSLNLLEKSDLCVLFGGF 60
           MSGFNPLNSPL ASSS+SLKEAY LEKLSL+KGFKI+YK+++DSLNLLEKSDLCVLFGGF
Sbjct: 1   MSGFNPLNSPLSASSSISLKEAYCLEKLSLQKGFKINYKLSEDSLNLLEKSDLCVLFGGF 60

Query: 61  SNACLNENERWILESISHSKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI 120
           SNACLNENERWILESI+ SKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI
Sbjct: 61  SNACLNENERWILESINQSKRPYALLRPLQDTRDLQENCLFASYEIHTEAAILALILRGI 120

Query: 121 LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKRALVLNREITKHANNAF 180
           LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKR LVLNREITKHANNAF
Sbjct: 121 LEQTSQLKGHVLEKIDVGYLSSEANMSEEELQELIALIVKAKKRVLVLNREITKHANNAF 180

Query: 181 LYTLLSELQNYLEILHIPCYDSSATTAFYDFKDQEWLLETAFKEGILPFKSQLQSKDLEL 240
           LYTLLS LQNYLEILHIPC DS+ T AFYD KDQEWLLETAFKEGILPF+SQLQSKDLEL
Sbjct: 181 LYTLLSGLQNYLEILHIPCNDSNPTVAFYDSKDQEWLLETAFKEGILPFESQLQSKDLEL 240

Query: 241 LERISEANGSFVYVSYKSLETPKLSFSKQFKIANKIEHSKAGFQISNQTLECELEENPHL 300
           LER+ EANGSFVYVSYKSL+TPKLSFSKQFKIANKI+HSKA FQI NQTLECELEE+PHL
Sbjct: 241 LERMGEANGSFVYVSYKSLKTPKLSFSKQFKIANKIKHSKAKFQILNQTLECELEESPHL 300

Query: 301 KGLIAILEGAFFDAYPYIPILSHSQGIS 328
           KGLIAILEGAFFD YPYIPILSHSQGIS
Sbjct: 301 KGLIAILEGAFFDTYPYIPILSHSQGIS 328



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,189,391
Number of Sequences: 1026957
Number of extensions: 7654802
Number of successful extensions: 20931
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20929
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 324,149,939
effective HSP length: 121
effective length of query: 207
effective length of database: 199,888,142
effective search space: 41376845394
effective search space used: 41376845394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)