BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645890|ref|NP_208068.1| hypothetical protein
[Helicobacter pylori 26695]
         (94 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208068.1|  (NC_000915) hypothetical protein [Helicoba...   193  4e-49
ref|NP_223915.1|  (NC_000921) putative [Helicobacter pylori ...    40  0.007

>ref|NP_208068.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64679 hypothetical protein HP1276 - Helicobacter pylori (strain 26695)
 gb|AAD08328.1| (AE000632) H. pylori predicted coding region HP1276 [Helicobacter
          pylori 26695]
          Length = 94

 Score =  193 bits (490), Expect = 4e-49
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MDKKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKK 60
          MDKKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKK
Sbjct: 1  MDKKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKK 60

Query: 61 ALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD 94
          ALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD
Sbjct: 61 ALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD 94



>ref|NP_223915.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71836 hypothetical protein jhp1197 - Helicobacter pylori (strain J99)
 gb|AAD06776.1| (AE001546) putative [Helicobacter pylori J99]
          Length = 123

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 33/116 (28%), Positives = 50/116 (42%), Gaps = 28/116 (24%)

Query: 7   NKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQ----EEKEGYK---------- 52
           N+  + +T  MK  H  L E  +KA M+P ++ L  I      E K+  K          
Sbjct: 8   NEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEKS 67

Query: 53  --QAAEGYKKALEAKEKMDKIVNTLKAINHD------------NNTIDIEPEDEKD 94
             Q  E +++  E  E+  ++   L  I +             ++TIDIEPEDEKD
Sbjct: 68  KAQQQESFEREKELMEEEFQVQRELLEIYYGYPTQKNKPGIKYDDTIDIEPEDEKD 123



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.304    0.125    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,772,592
Number of Sequences: 1026957
Number of extensions: 1993290
Number of successful extensions: 6055
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6052
Number of HSP's gapped (non-prelim): 2
length of query: 94
length of database: 324,149,939
effective HSP length: 70
effective length of query: 24
effective length of database: 252,262,949
effective search space: 6054310776
effective search space used: 6054310776
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 90 (39.3 bits)