BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644759|ref|NP_206929.1| hypothetical protein
[Helicobacter pylori 26695]
         (141 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206929.1|  (NC_000915) hypothetical protein [Helicoba...   286  3e-77
ref|NP_222839.1|  (NC_000921) putative [Helicobacter pylori ...   264  1e-70
ref|NP_223375.1|  (NC_000921) putative [Helicobacter pylori ...    77  4e-14
ref|NP_223376.1|  (NC_000921) putative [Helicobacter pylori ...    68  2e-11
ref|NP_207515.1|  (NC_000915) hypothetical protein [Helicoba...    65  1e-10
ref|NP_207513.1|  (NC_000915) hypothetical protein [Helicoba...    55  2e-07

>ref|NP_206929.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64536 hypothetical protein HP0129 - Helicobacter pylori (strain 26695)
 gb|AAD07198.1| (AE000534) H. pylori predicted coding region HP0129 [Helicobacter
           pylori 26695]
          Length = 141

 Score =  286 bits (732), Expect = 3e-77
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MKKLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
           MKKLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE
Sbjct: 1   MKKLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60

Query: 61  EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120
           EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA
Sbjct: 61  EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120

Query: 121 CEGPFHDHERKKGKKPSHHKH 141
           CEGPFHDHERKKGKKPSHHKH
Sbjct: 121 CEGPFHDHERKKGKKPSHHKH 141



>ref|NP_222839.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71970 hypothetical protein jhp0118 - Helicobacter pylori (strain J99)
 gb|AAD05707.1| (AE001451) putative [Helicobacter pylori J99]
          Length = 143

 Score =  264 bits (675), Expect = 1e-70
 Identities = 131/143 (91%), Positives = 135/143 (93%), Gaps = 2/143 (1%)

Query: 1   MKKLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
           MKKLA SLLFTGTFLGLFLNASDFKSMD+KQLLEQAGKVAPSEVPEFR EVNKRL  MKE
Sbjct: 1   MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKE 60

Query: 61  EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120
           E+R+ YKADFKKAMDKNLASLSQEDRNKRKKEILE IANKKKTMTMKEYREEGLDLHDCA
Sbjct: 61  EERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCA 120

Query: 121 CEGPFHDHERK--KGKKPSHHKH 141
           CEGPFHDHE+K  KGKKPSHHKH
Sbjct: 121 CEGPFHDHEKKGQKGKKPSHHKH 143



>ref|NP_223375.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71903 hypothetical protein jhp0657 - Helicobacter pylori (strain J99)
 gb|AAD06242.1| (AE001498) putative [Helicobacter pylori J99]
          Length = 140

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 4/120 (3%)

Query: 2   KKLAVSLLFTGTFLGL-FLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
           + LA  LL     LGL  L A DF  + +++LL+ AG +  +E  ++R EV+KRL  +  
Sbjct: 3   RSLAFCLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSA 59

Query: 61  EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120
           ED K ++A+F +   KNL+ +S+ED  K ++E+ + +  K K ++ +E + +GL++  C+
Sbjct: 60  EDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSVCS 119



>ref|NP_223376.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71904 hypothetical protein jhp0658 - Helicobacter pylori (strain J99)
 gb|AAD06236.1| (AE001498) putative [Helicobacter pylori J99]
          Length = 152

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 3   KLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEED 62
           K A+ +L  G  L + LNA DF    D+ L + AG VAP ++ ++  E+ KR+  M E+ 
Sbjct: 2   KKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDK 61

Query: 63  RKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCACE 122
           RK +     +   KN   ++  D   R+K I EA+  KK  M   E  ++   L  C   
Sbjct: 62  RKAFHKQLHEYATKNTDKMTVADFEARQKAIKEAL--KKGNM---EDMDDDFGLRSC--- 113

Query: 123 GPFHDHERKKGKKPSHHKH 141
                   K GKK  H KH
Sbjct: 114 --------KHGKKHKHDKH 124



>ref|NP_207515.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64610 hypothetical protein HP0721 - Helicobacter pylori (strain 26695)
 gb|AAD07777.1| (AE000585) H. pylori predicted coding region HP0721 [Helicobacter
           pylori 26695]
          Length = 152

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 43/139 (30%), Positives = 64/139 (45%), Gaps = 16/139 (11%)

Query: 3   KLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEED 62
           K A+ +L     L + LNA DF    D+ L + AG VAP ++ ++  E+ KR+  M E+ 
Sbjct: 2   KKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDK 61

Query: 63  RKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCACE 122
           RK +     +   KN   ++  D   R+K + EA+  KK  M   E  ++   L  C   
Sbjct: 62  RKAFHKQLHEYATKNTDKMTVADFEARQKAVKEAL--KKGNM---EDMDDDFGLRSC--- 113

Query: 123 GPFHDHERKKGKKPSHHKH 141
                   K GKK  H KH
Sbjct: 114 --------KHGKKHKHDKH 124



>ref|NP_207513.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64609 hypothetical protein HP0719 - Helicobacter pylori (strain 26695)
 gb|AAD07775.1| (AE000585) H. pylori predicted coding region HP0719 [Helicobacter
           pylori 26695]
          Length = 109

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 4/83 (4%)

Query: 2   KKLAVSLLFTGTFLGL-FLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
           + LA  LL     LGL  L A DF  + +++LL+ AG +  +E  ++R EV+KRL  +  
Sbjct: 24  RSLAFYLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNA 80

Query: 61  EDRKNYKADFKKAMDKNLASLSQ 83
           ED K ++A+F +   KNL+ +S+
Sbjct: 81  EDAKKFRANFSRIARKNLSKMSE 103



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,033,872
Number of Sequences: 1026957
Number of extensions: 3041564
Number of successful extensions: 13756
Number of sequences better than 1.0e-02: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13747
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 324,149,939
effective HSP length: 117
effective length of query: 24
effective length of database: 203,995,970
effective search space: 4895903280
effective search space used: 4895903280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 89 (38.9 bits)