BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645896|ref|NP_208075.1| hypothetical protein
[Helicobacter pylori 26695]
         (485 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208075.1|  (NC_000915) hypothetical protein [Helicoba...   985  0.0
ref|NP_213098.1|  (NC_000918) ADP-heptose:LPS heptosyltransf...    52  1e-05
>ref|NP_208075.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64680 hypothetical protein HP1283 - Helicobacter pylori (strain 26695)
 gb|AAD08329.1| (AE000632) H. pylori predicted coding region HP1283 [Helicobacter
           pylori 26695]
          Length = 485

 Score =  985 bits (2546), Expect = 0.0
 Identities = 485/485 (100%), Positives = 485/485 (100%)

Query: 1   MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR 60
           MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR
Sbjct: 1   MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR 60

Query: 61  IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA 120
           IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA
Sbjct: 61  IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA 120

Query: 121 TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS 180
           TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS
Sbjct: 121 TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS 180

Query: 181 NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS 240
           NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS
Sbjct: 181 NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS 240

Query: 241 FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP 300
           FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP
Sbjct: 241 FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP 300

Query: 301 YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ 360
           YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ
Sbjct: 301 YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ 360

Query: 361 TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM 420
           TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM
Sbjct: 361 TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM 420

Query: 421 IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT 480
           IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT
Sbjct: 421 IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT 480

Query: 481 YFERV 485
           YFERV
Sbjct: 481 YFERV 485
>ref|NP_213098.1| (NC_000918) ADP-heptose:LPS heptosyltransferase [Aquifex aeolicus]
 pir||G70313 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II rfaC2
           [similarity] - Aquifex aeolicus
 gb|AAC06484.1| (AE000675) ADP-heptose:LPS heptosyltransferase [Aquifex aeolicus]
          Length = 317

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 7/96 (7%)

Query: 316 KRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASF 375
           K + E++  LN     V+   +K+DEE +  I    KN ++LV +T L E++ +LK A F
Sbjct: 180 KNWKELVRKLNTP---VVITGTKEDEERSKEI--DGKNVVNLVGKTSLREFMGVLKGAKF 234

Query: 376 AMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYP 411
           A+ N+SS  H++   ++P   I ++  +SP++  YP
Sbjct: 235 AISNDSSAVHVANAFRVPALTIYTA--TSPKYGFYP 268
  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.325    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,156,805
Number of Sequences: 1026957
Number of extensions: 13804906
Number of successful extensions: 49597
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49594
Number of HSP's gapped (non-prelim): 3
length of query: 485
length of database: 324,149,939
effective HSP length: 125
effective length of query: 360
effective length of database: 195,780,314
effective search space: 70480913040
effective search space used: 70480913040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 99 (42.7 bits)