BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645896|ref|NP_208075.1| hypothetical protein
[Helicobacter pylori 26695]
(485 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208075.1| (NC_000915) hypothetical protein [Helicoba... 985 0.0
ref|NP_213098.1| (NC_000918) ADP-heptose:LPS heptosyltransf... 52 1e-05
>ref|NP_208075.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64680 hypothetical protein HP1283 - Helicobacter pylori (strain 26695)
gb|AAD08329.1| (AE000632) H. pylori predicted coding region HP1283 [Helicobacter
pylori 26695]
Length = 485
Score = 985 bits (2546), Expect = 0.0
Identities = 485/485 (100%), Positives = 485/485 (100%)
Query: 1 MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR 60
MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR
Sbjct: 1 MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR 60
Query: 61 IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA 120
IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA
Sbjct: 61 IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA 120
Query: 121 TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS 180
TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS
Sbjct: 121 TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS 180
Query: 181 NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS 240
NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS
Sbjct: 181 NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS 240
Query: 241 FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP 300
FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP
Sbjct: 241 FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP 300
Query: 301 YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ 360
YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ
Sbjct: 301 YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ 360
Query: 361 TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM 420
TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM
Sbjct: 361 TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM 420
Query: 421 IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT 480
IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT
Sbjct: 421 IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT 480
Query: 481 YFERV 485
YFERV
Sbjct: 481 YFERV 485
>ref|NP_213098.1| (NC_000918) ADP-heptose:LPS heptosyltransferase [Aquifex aeolicus]
pir||G70313 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II rfaC2
[similarity] - Aquifex aeolicus
gb|AAC06484.1| (AE000675) ADP-heptose:LPS heptosyltransferase [Aquifex aeolicus]
Length = 317
Score = 52.4 bits (124), Expect = 1e-05
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 316 KRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASF 375
K + E++ LN V+ +K+DEE + I KN ++LV +T L E++ +LK A F
Sbjct: 180 KNWKELVRKLNTP---VVITGTKEDEERSKEI--DGKNVVNLVGKTSLREFMGVLKGAKF 234
Query: 376 AMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYP 411
A+ N+SS H++ ++P I ++ +SP++ YP
Sbjct: 235 AISNDSSAVHVANAFRVPALTIYTA--TSPKYGFYP 268
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,156,805
Number of Sequences: 1026957
Number of extensions: 13804906
Number of successful extensions: 49597
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49594
Number of HSP's gapped (non-prelim): 3
length of query: 485
length of database: 324,149,939
effective HSP length: 125
effective length of query: 360
effective length of database: 195,780,314
effective search space: 70480913040
effective search space used: 70480913040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 99 (42.7 bits)