BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645897|ref|NP_208076.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(346 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208076.1| (NC_000915) conserved hypothetical protein... 699 0.0
ref|NP_223922.1| (NC_000921) putative [Helicobacter pylori ... 638 0.0
gb|AAF72875.1|AF215936_1 (AF215936) heptosyltransferase III... 187 2e-46
ref|NP_438681.1| (NC_000907) conserved hypothetical protein... 182 4e-45
ref|NP_246231.1| (NC_002663) unknown [Pasteurella multocida... 176 3e-43
ref|NP_229880.1| (NC_002505) ADP-heptose--LPS heptosyltrans... 174 1e-42
ref|NP_603440.1| (NC_003454) Lipopolysaccharide heptosyltra... 105 1e-21
ref|NP_603889.1| (NC_003454) ADP-heptose:LPS heptosyltransf... 54 3e-06
gb|AAK12962.1| (AF343914) WaaF [Campylobacter jejuni] 48 1e-04
ref|NP_282295.1| (NC_002163) ADP-heptose--LPS heptosyltrans... 45 0.001
>ref|NP_208076.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64680 conserved hypothetical protein HP1284 - Helicobacter pylori
(strain 26695)
gb|AAD08327.1| (AE000632) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 346
Score = 699 bits (1804), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MDFIGFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPS 60
MDFIGFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPS
Sbjct: 1 MDFIGFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPS 60
Query: 61 YTTPIALEFPFIDEVIIEDNHLSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAP 120
YTTPIALEFPFIDEVIIEDNHLSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAP
Sbjct: 61 YTTPIALEFPFIDEVIIEDNHLSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAP 120
Query: 121 KTKIYSWLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKER 180
KTKIYSWLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKER
Sbjct: 121 KTKIYSWLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKER 180
Query: 181 SIIASKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKA 240
SIIASKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKA
Sbjct: 181 SIIASKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKA 240
Query: 241 TEELLKKIPFAHLYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELS 300
TEELLKKIPFAHLYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELS
Sbjct: 241 TEELLKKIPFAHLYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELS 300
Query: 301 ASIARWRPFNERFLGITPPNGSNDMGLIDIEKEGEKIVGFINYRKM 346
ASIARWRPFNERFLGITPPNGSNDMGLIDIEKEGEKIVGFINYRKM
Sbjct: 301 ASIARWRPFNERFLGITPPNGSNDMGLIDIEKEGEKIVGFINYRKM 346
>ref|NP_223922.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71836 hypothetical protein jhp1204 - Helicobacter pylori (strain J99)
gb|AAD06783.1| (AE001546) putative [Helicobacter pylori J99]
Length = 352
Score = 638 bits (1646), Expect = 0.0
Identities = 314/341 (92%), Positives = 330/341 (96%)
Query: 1 MDFIGFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPS 60
MDF+GFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKG EVYLGVVVPS
Sbjct: 1 MDFVGFEDLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGVEVYLGVVVPS 60
Query: 61 YTTPIALEFPFIDEVIIEDNHLSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAP 120
YTTPIALEFPFIDEVIIEDNHL+ TLK++ IDALIFLFSNFKNA+LAFSLRKSIPYILAP
Sbjct: 61 YTTPIALEFPFIDEVIIEDNHLATTLKNRSIDALIFLFSNFKNAKLAFSLRKSIPYILAP 120
Query: 121 KTKIYSWLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKLKDKSKER 180
KTKIYSWLYQK VRQ+RSLCLKTEYEYNLDLIHAFCKD++LPNAQLKKIAWKLKDKSKER
Sbjct: 121 KTKIYSWLYQKRVRQNRSLCLKTEYEYNLDLIHAFCKDYDLPNAQLKKIAWKLKDKSKER 180
Query: 181 SIIASKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKA 240
SIIASKLNA+V LLWIGVHMHSGGSSPVLPASHFI+LI LH LSCEIILICGPGERKA
Sbjct: 181 SIIASKLNANVDLLWIGVHMHSGGSSPVLPASHFIELIAILHEKLSCEIILICGPGERKA 240
Query: 241 TEELLKKIPFAHLYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELS 300
TEELLK++PFAHLYDTSHSLVDLAKLCANLSV IGNASGPLHVNALFDNQSIGFYPNEL+
Sbjct: 241 TEELLKEVPFAHLYDTSHSLVDLAKLCANLSVCIGNASGPLHVNALFDNQSIGFYPNELT 300
Query: 301 ASIARWRPFNERFLGITPPNGSNDMGLIDIEKEGEKIVGFI 341
ASIARWRPFNE+FLGITPPNGSNDMGLIDI+KE EKI+GFI
Sbjct: 301 ASIARWRPFNEQFLGITPPNGSNDMGLIDIQKESEKIMGFI 341
>gb|AAF72875.1|AF215936_1 (AF215936) heptosyltransferase III WaaQ [Haemophilus ducreyi]
Length = 344
Score = 187 bits (475), Expect = 2e-46
Identities = 114/342 (33%), Positives = 186/342 (54%), Gaps = 24/342 (7%)
Query: 18 QKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVII 77
+K+ VIRNDK+GDF+L PA + LK + + + +VP+YT P+A P ID +II
Sbjct: 2 KKLLVIRNDKIGDFMLCFPAFMMLKQSM----PNIEITALVPNYTAPLAELCPAIDHLII 57
Query: 78 EDNHLSATLKSKPI---------DALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWL 128
++ + K + DA+I S++ NA+L + + I Y LAP TK++ +L
Sbjct: 58 DNTDKQDPIAFKQVQQAVQNGQFDAVICFVSSWYNAKLTW--QSGIRYRLAPATKLFQFL 115
Query: 129 YQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLP--NAQLKKIAWKLKDKSKERSIIASK 186
Y + Q RS +K E EYNLDL AF DH++ Q+ + + + S +++ +A
Sbjct: 116 YNHRLTQRRSQSIKAESEYNLDLARAFLIDHHMMPVEPQIPYLHFTDEIISYQKAKLAKN 175
Query: 187 LNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEELLK 246
L W+ VH +GGS+ L + + LI+ + + + C++IL G GER+ EL +
Sbjct: 176 LAISTASKWLFVHSSTGGSATNLSIAQYATLINGIQSAIKCQVILTAGKGERERAVELAE 235
Query: 247 KIPFAH--LYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELSASIA 304
K+ + +YD + L D + A ++I ++GPLH+ + ++GFYP+ LSA+
Sbjct: 236 KLTDQNVVIYDKNDGLADFTRSLACADLFIAGSTGPLHIAGGLNIPTVGFYPSRLSATPR 295
Query: 305 RWRPFN--ERFLGITPPNGSN---DMGLIDIEKEGEKIVGFI 341
RWRP N ++ L PP+G D+ LI IE+ ++ FI
Sbjct: 296 RWRPINQVDKHLAFCPPSGKQCEMDLTLISIEQALTSVIPFI 337
>ref|NP_438681.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44011|Y523_HAEIN Hypothetical protein HI0523 precursor
pir||B64009 hypothetical protein HI0523 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22181.1| (U32734) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 356
Score = 182 bits (463), Expect = 4e-45
Identities = 120/344 (34%), Positives = 174/344 (49%), Gaps = 23/344 (6%)
Query: 15 ENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDE 74
E +K+ VIRNDKLGDF+ A PA LK + ++ L +VPSYT +A PFID
Sbjct: 9 EIMEKILVIRNDKLGDFMQAWPAFAMLKAS----NPKLKLTALVPSYTASLAEICPFIDH 64
Query: 75 VIIEDNHLSAT--------LKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYS 126
VII+ T +K++ D +I FSN N +LA+ + I Y LAP TK
Sbjct: 65 VIIDSKKNDKTDFKRLVQEIKAQQFDGMISFFSNTHNGKLAW--KSGIKYRLAPATKWVQ 122
Query: 127 WLYQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKK--IAWKLKDKSKERSIIA 184
LY + Q RS K+E EYN DL+ F + HN+P + K + ++ +R +
Sbjct: 123 ILYNHRLTQRRSRSEKSEAEYNQDLVRTFLQKHNMPVVEPKPPYLIFEKSAVENQRVFLQ 182
Query: 185 SKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEEL 244
L WI VH SGGS+ L + + LI L C ++L GPGE + EL
Sbjct: 183 ENLGLSANKKWIFVHSGSGGSATNLSLAQYADLIKGLLAEFDCNVVLTAGPGESEKAYEL 242
Query: 245 LKKIPFAH--LYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELSAS 302
+ +YD + LVD A A ++I ++GPLH+++ F+ +IGFYPN S+
Sbjct: 243 ANLVNDLRVAIYDKNKGLVDFAHSLACADLFIAGSTGPLHLSSAFNIPTIGFYPNSRSSQ 302
Query: 303 IARWRPFN--ERFLGITPPNGSN---DMGLIDIEKEGEKIVGFI 341
RW+P N ++ + PP G ++ LI I+ +I FI
Sbjct: 303 PRRWKPINDVDKHIAFCPPAGKESQMNLELISIDNALAEISLFI 346
>ref|NP_246231.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03378.1| (AE006168) unknown [Pasteurella multocida]
Length = 348
Score = 176 bits (447), Expect = 3e-43
Identities = 115/343 (33%), Positives = 180/343 (51%), Gaps = 25/343 (7%)
Query: 18 QKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVII 77
QK+ V+RNDKLGDF+LA PA LK + + L +VP+YT +A P++D+VII
Sbjct: 2 QKLLVVRNDKLGDFMLAWPAFAMLK----QSNPSLKLTALVPNYTADLARLCPYLDDVII 57
Query: 78 EDNHLS---------ATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWL 128
+ + +K+ DA I FS+ NA L + + IP+ LAP TK+ +L
Sbjct: 58 DVGKKADKADQLKTLQAIKAVKFDASINFFSDKYNALLVW--KAGIPFRLAPATKLIQFL 115
Query: 129 YQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKK--IAWKLKDKSKERSIIASK 186
Y V Q RS LK E+EYNLDL AF + + P + + ++ +R +++
Sbjct: 116 YNHRVTQRRSKSLKPEFEYNLDLARAFLQKTHCPIVEPTPPYLTFEQNAVQHQREMLSQT 175
Query: 187 LNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEELLK 246
L + WI VH SGGS+ L + +LI L + C+I+L GP E + L
Sbjct: 176 LGLALEKKWIFVHSGSGGSATNLSLEQYAQLILGLLSQFDCQIVLTAGPNESEKAHSLAN 235
Query: 247 KIPFAHL--YDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELSASIA 304
+ ++ YD + LVD A+ A ++I ++GPLH++A + +IGFYP+ SA+
Sbjct: 236 LVNHHNVVVYDKNAGLVDFARSLACADLFIAGSTGPLHLSAALNIPTIGFYPSRRSATPL 295
Query: 305 RWRPFNE--RFLGITPPNGSN----DMGLIDIEKEGEKIVGFI 341
RW+P N+ + L +P D+ LIDI++ + + F+
Sbjct: 296 RWQPINDPTKHLAFSPQTQDREKQMDLSLIDIDQVLTQAIPFV 338
>ref|NP_229880.1| (NC_002505) ADP-heptose--LPS heptosyltransferase II, putative
[Vibrio cholerae]
pir||A82348 probable ADP-heptose--LPS heptosyltransferase II VC0223 [imported]
- Vibrio cholerae (group O1 strain N16961)
gb|AAF93399.1| (AE004112) ADP-heptose--LPS heptosyltransferase II, putative
[Vibrio cholerae]
Length = 345
Score = 174 bits (442), Expect = 1e-42
Identities = 114/336 (33%), Positives = 175/336 (51%), Gaps = 29/336 (8%)
Query: 18 QKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVII 77
+K+ VIRNDK+GDF+LA P+ LK + + ++ +VP YT +A P+ID VII
Sbjct: 2 KKLLVIRNDKIGDFMLAWPSFAMLKASL----PDCHITALVPKYTAALAELCPWIDAVII 57
Query: 78 EDNH---------LSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWL 128
+ L T+K++ DA I LFS NA L + R IPY LAP TK+
Sbjct: 58 DPGQQADKAQHKQLVQTVKAQQFDASINLFSTMYNALLVWKAR--IPYRLAPATKLAQIF 115
Query: 129 YQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLP--NAQLKKIAWKLKDKSKERSIIASK 186
YQ ++Q RS K EYEYNLDL+ AF +D P + + + + +RS +A +
Sbjct: 116 YQHRIKQKRSQSAKPEYEYNLDLVRAFLRDIGQPIIEPNAPYLTFPAEQLAAQRSKLAEQ 175
Query: 187 LNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEELLK 246
L+ W+ VH SGGS+ L + +L+ + + +++L GPGE + +L
Sbjct: 176 LDIGPDKAWLFVHAGSGGSANNLSLEQYCELVTGVMDEHK-QVVLTAGPGEEEKAAQLQS 234
Query: 247 KIP----FAHLYDTSHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELSAS 302
+ A LY + LVD + A ++I ++GPLH+ A D ++GF+P + SA+
Sbjct: 235 LLAEQGVLAALYAKNDGLVDFTRSLACAQLFIAGSTGPLHIAAALDVPTVGFFPAKRSAT 294
Query: 303 IARWRPFNE--RFLGITPPNGSN-----DMGLIDIE 331
RWRP N + + PP + +MG ID++
Sbjct: 295 PLRWRPLNSQGKHIAFCPPPADDKANQENMGRIDMK 330
>ref|NP_603440.1| (NC_003454) Lipopolysaccharide heptosyltransferase-1 [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94739.1| (AE010566) Lipopolysaccharide heptosyltransferase-1 [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 345
Score = 105 bits (261), Expect = 1e-21
Identities = 86/308 (27%), Positives = 149/308 (47%), Gaps = 20/308 (6%)
Query: 9 LKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALE 68
+K K+ +++ V R DK+GD +L+IP+ LK + L V+V Y I
Sbjct: 1 MKGKEIMEIKRILVSRTDKIGDLVLSIPSFFMLKKMY----PNAELVVIVRKYNVDIVKN 56
Query: 69 FPFIDEVIIEDNHLSATLKSK----PIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKI 124
P+ID ++I D + A L K D I L+++ A LA + + I + P +K+
Sbjct: 57 LPYIDRIVIIDEYSKAELLEKIAYFKADVFIALYNDSYIASLARASKAKIK--IGPISKL 114
Query: 125 YSWL-YQKSVRQSRSLCLKTEYEYNLDLIHAFCKDHNLPNAQLKKIAWKL--KDKSKERS 181
S+ Y K V Q RSL LK E +YNLDL+ + A L ++ KL D++K+ +
Sbjct: 115 SSFFTYNKGVLQKRSLSLKNEGQYNLDLVTKLDRKRF---AILYELNTKLILTDENKKVA 171
Query: 182 IIASKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNL-SCEIILICGPGERKA 240
+ K N+ G + V+ GGS+ + +I ++ + + II+ + +
Sbjct: 172 DVYFKENSIEGKTLV-VNPFIGGSAKNITDEQYISILKKIKEKMPDLNIIITSYTTDEER 230
Query: 241 TEELLKKIPFAHLYDTSH--SLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNE 298
TE+L K I ++ S+ S+++ A + VY G ++GP H+ + + YP++
Sbjct: 231 TEKLCKDIGKDKIFAFSNGASILNTASIIDRADVYFGASTGPTHIAGALGKKIVAIYPHK 290
Query: 299 LSASIARW 306
+ S RW
Sbjct: 291 KTQSPTRW 298
>ref|NP_603889.1| (NC_003454) ADP-heptose:LPS heptosyltransferase II [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95188.1| (AE010606) ADP-heptose:LPS heptosyltransferase II [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 358
Score = 53.5 bits (127), Expect = 3e-06
Identities = 75/334 (22%), Positives = 137/334 (40%), Gaps = 35/334 (10%)
Query: 20 VFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVII-- 77
+ VIR ++GD IL++P +LK F + V+ P+ P+ID VI
Sbjct: 10 ILVIRFKRIGDAILSLPLCHSLKLTF----PNSKVDFVLYEDVAPLFEGHPYIDNVITIT 65
Query: 78 --EDNHLSATLKS------KPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWLY 129
E + +K K D +I + S K+ RK+ P+ + K + Y
Sbjct: 66 KEEQKNPFKYIKKVYNVTRKKYDIIIDIMSTPKSELFCMFSRKT-PFRIGRYKKKRGFFY 124
Query: 130 QKSVRQSRSLCLKTEYEYNL-----DLIHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIA 184
+++ SL ++ L ++ KD++ KK K K K E +
Sbjct: 125 NYKMKEKESLNKVDKFLNQLLPPFEEVGFDVKKDYDFKFFAEKKEKEKYKQKMLETGVDF 184
Query: 185 SKLNADVGLLWIGVHMHSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEEL 244
SK I ++S + + P +++ L N S +II ++ +++
Sbjct: 185 SK-------PVIAFSIYSRVAHKIYPIDKMKEVVKFLINRYSAQIIFFYSADQKDEIQKI 237
Query: 245 LKKI-PFAHLYDT--SHSLVDLAKLCANLSVYIGNASGPLHVNALFDNQSIGFYPNELSA 301
K+I F +++ + + ++ +L N YIGN G H+ ++ + SA
Sbjct: 238 HKEIGDFKNIFSSIETPTIKNLVPFLENCDYYIGNEGGARHLAQGVGIPTLAIF--SPSA 295
Query: 302 SIARWRPF-NERFLGITPPN--GSNDMGLIDIEK 332
+ W PF +E+ +GI+P + N + L D K
Sbjct: 296 DLKEWLPFPSEKNMGISPIDMLEKNALSLDDFNK 329
>gb|AAK12962.1| (AF343914) WaaF [Campylobacter jejuni]
Length = 316
Score = 48.1 bits (113), Expect = 1e-04
Identities = 84/313 (26%), Positives = 139/313 (43%), Gaps = 55/313 (17%)
Query: 19 KVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVIIE 78
K+F+ LGD ++A PAL A+K F +Y +V +T + EFP ++IIE
Sbjct: 2 KIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLV----STALFREFP-NSKIIIE 56
Query: 79 DNH------LSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWLYQKS 132
+ LS + ID L F F R AFS K I +IL K + + + K+
Sbjct: 57 NKQTRYKQALSLRKELGKID-LSFAF------RSAFS-SKIILHILKTKQR---YFFDKN 105
Query: 133 VRQSRSLCLKTEYEYNLDL-IHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIASKLNADV 191
+ LK Y L I A KD LP +KLK + L
Sbjct: 106 KHKEEHQVLKYLYFIENSLSIKAHFKDLKLP--------FKLK--------FQNPLILKN 149
Query: 192 GLLWIGVHM-HSGGSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEELLKKIPF 250
G +G++ S GS+ AS+F K+ L+ + S EI++ G KA +EL +I +
Sbjct: 150 GKKILGLNPGASFGSAKRWDASYFAKV--ALNFSQSHEILIF---GAGKAEQELCNEI-Y 203
Query: 251 AHLYDTSHSLVDLAK------LCANLS---VYIGNASGPLHVNALFDNQSIGFYPNELSA 301
L + + + +L LC N++ ++I N SGP+H++ ++ +++ +
Sbjct: 204 QILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDSGPMHISTVYKIKTVAIFGPTKFT 263
Query: 302 SIARWRPFNERFL 314
+ W+ N + +
Sbjct: 264 QTSPWQNQNAKLV 276
>ref|NP_282295.1| (NC_002163) ADP-heptose--LPS heptosyltransferase [Campylobacter
jejuni]
pir||F81319 ADP-heptose--LPS heptosyltransferase Cj1148 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73402.1| (AL139077) ADP-heptose--LPS heptosyltransferase [Campylobacter
jejuni]
Length = 319
Score = 45.4 bits (106), Expect = 0.001
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 43/307 (14%)
Query: 19 KVFVIRNDKLGDFILAIPALIALKHAFLEKGKEVYLGVVVPSYTTPIALEFPFIDEVIIE 78
K+F+ LGD ++A PAL +K F + +Y V +T + EFP + II
Sbjct: 2 KIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFV----STALFKEFP--NSKIII 55
Query: 79 DNHLSATLKSKPIDALIFLFSNFKNARLAFSLRKSIPYILAPKTKIYSWLYQKSVRQSRS 138
+N LS ++ + + R AFS K I +IL K + + + K+ +
Sbjct: 56 ENKLSRYKQALSLRKELGKIDLSFAFRSAFS-SKIILHILKTKQRYF---FDKNKYKEEH 111
Query: 139 LCLKTEYEYNLDL-IHAFCKDHNLPNAQLKKIAWKLKDKSKERSIIASKLNADVGLLWIG 197
LK Y L I A KD LP +KLK + L G +G
Sbjct: 112 QVLKYLYFIENSLSIKAHFKDLKLP--------FKLK--------FQNPLILRNGKKILG 155
Query: 198 VHMHSG-GSSPVLPASHFIKLIDCLHNNLSCEIILICGPGERKATEELLKKIPFAHLYDT 256
++ + GS+ AS+F K+ L+ + S +I++ G KA +EL +I + L +
Sbjct: 156 LNPGASFGSAKRWDASYFAKV--ALNFSQSHDILIF---GAGKAEQELCNEI-YQILKEQ 209
Query: 257 SHSLVDLAK------LCANLS---VYIGNASGPLHVNALFDNQSIGFYPNELSASIARWR 307
+ + +L LC N++ ++I N SGP+H++A++ +++ + + W+
Sbjct: 210 NIKVKNLCNKTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQ 269
Query: 308 PFNERFL 314
N + +
Sbjct: 270 NENAKLV 276
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,447,891
Number of Sequences: 1026957
Number of extensions: 9929482
Number of successful extensions: 22118
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22090
Number of HSP's gapped (non-prelim): 10
length of query: 346
length of database: 324,149,939
effective HSP length: 122
effective length of query: 224
effective length of database: 198,861,185
effective search space: 44544905440
effective search space used: 44544905440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)