BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645899|ref|NP_208078.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(182 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208078.1| (NC_000915) conserved hypothetical secrete... 365 e-100
ref|NP_223924.1| (NC_000921) putative [Helicobacter pylori ... 348 1e-95
ref|NP_281610.1| (NC_002163) putative periplasmic protein [... 126 1e-28
ref|NP_470131.1| (NC_003212) conserved hypothetical protein... 120 9e-27
ref|NP_464323.1| (NC_003210) conserved hypothetical protein... 119 2e-26
ref|NP_640908.1| (NC_003919) conserved hypothetical protein... 100 6e-21
ref|NP_287190.1| (NC_002655) orf, hypothetical protein [Esc... 100 8e-21
ref|NP_638952.1| (NC_003902) conserved hypothetical protein... 99 2e-20
ref|NP_373211.1| (NC_002758) conserved hypothetical protein... 98 4e-20
ref|NP_299126.1| (NC_002488) conserved hypothetical protein... 98 4e-20
ref|NP_455651.1| (NC_003198) putative exported protein [Sal... 97 7e-20
ref|NP_647423.1| (NC_003923) conserved hypothetical protein... 97 7e-20
ref|NP_110730.1| (NC_002689) Uncharacterized conserved prot... 96 2e-19
ref|NP_393610.1| (NC_002578) conserved hypothetical protein... 95 3e-19
ref|NP_232929.1| (NC_002506) conserved hypothetical protein... 91 8e-18
ref|NP_249114.1| (NC_002516) conserved hypothetical protein... 88 5e-17
ref|NP_405852.1| (NC_003143) putative exported protein [Yer... 87 1e-16
ref|NP_629667.1| (NC_003888) conserved hypothetical protein... 85 3e-16
ref|NP_520838.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEI... 84 1e-15
gb|AAD42411.1|AF157493_19 (AF157493) hypothetical protein [... 84 1e-15
ref|NP_420922.1| (NC_002696) conserved hypothetical protein... 83 2e-15
ref|NP_421410.1| (NC_002696) conserved hypothetical protein... 82 3e-15
ref|NP_600396.1| (NC_003450) COG2353:Uncharacterized BCR [C... 82 3e-15
ref|NP_460580.1| (NC_003197) putative periplasmic protein [... 79 2e-14
ref|NP_422186.1| (NC_002696) conserved hypothetical protein... 76 2e-13
ref|NP_455876.1| (NC_003198) putative exported protein [Sal... 75 3e-13
ref|NP_628212.1| (NC_003888) conserved hypothetical protein... 75 3e-13
ref|NP_626804.1| (NC_003888) conserved hypothetical protein... 74 8e-13
ref|NP_518911.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEI... 72 3e-12
ref|NP_284182.1| (NC_003116) putative periplasmic protein [... 72 3e-12
ref|NP_274064.1| (NC_003112) conserved hypothetical protein... 72 3e-12
ref|NP_631653.1| (NC_003888) conserved hypothetical protein... 69 2e-11
ref|NP_643341.1| (NC_003919) conserved hypothetical protein... 67 7e-11
ref|NP_638197.1| (NC_003902) conserved hypothetical protein... 67 7e-11
ref|NP_298618.1| (NC_002488) conserved hypothetical protein... 67 1e-10
ref|NP_522799.1| (NC_003296) PROBABLE SIGNAL PEPTIDE PROTEI... 65 4e-10
ref|NP_520839.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEI... 59 2e-08
ref|NP_298616.1| (NC_002488) conserved hypothetical protein... 57 1e-07
ref|NP_631168.1| (NC_003888) conserved hypothetical protein... 56 2e-07
ref|NP_532177.1| (NC_003304) conserved hypothetical protein... 52 3e-06
ref|NP_354493.1| (NC_003062) AGR_C_2742p [Agrobacterium tum... 52 3e-06
ref|NP_110884.1| (NC_002689) Uncharacterized conserved prot... 51 5e-06
ref|NP_422185.1| (NC_002696) conserved hypothetical protein... 49 2e-05
ref|NP_643343.1| (NC_003919) conserved hypothetical protein... 49 3e-05
ref|NP_638199.1| (NC_003902) conserved hypothetical protein... 49 3e-05
ref|NP_640550.1| (NC_003919) conserved hypothetical protein... 47 1e-04
ref|NP_295011.1| (NC_001263) conserved hypothetical protein... 42 0.004
>ref|NP_208078.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||F64680 conserved hypothetical secreted protein HP1286 - Helicobacter
pylori (strain 26695)
gb|AAD08331.1| (AE000633) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 182
Score = 365 bits (937), Expect = e-100
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM
Sbjct: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVT 120
LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVT
Sbjct: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVT 120
Query: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEAY 180
KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEAY
Sbjct: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEAY 180
Query: 181 AQ 182
AQ
Sbjct: 181 AQ 182
>ref|NP_223924.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71837 hypothetical protein jhp1206 - Helicobacter pylori (strain J99)
gb|AAD06785.1| (AE001546) putative [Helicobacter pylori J99]
Length = 182
Score = 348 bits (894), Expect = 1e-95
Identities = 172/182 (94%), Positives = 179/182 (97%)
Query: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
MKKAL+ TL GVSLAFA PYTIDKANSSVW+EVKHFTFNETRGAFDNFDGKIDLEPNTK+
Sbjct: 1 MKKALMFTLLGVSLAFATPYTIDKANSSVWYEVKHFTFNETRGAFDNFDGKIDLEPNTKV 60
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVT 120
LSVFEGNID+KSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKI+GDLTLRGVT
Sbjct: 61 LSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIHGDLTLRGVT 120
Query: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEAY 180
KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFS+AVVGDEVKIE+KLEAY
Sbjct: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSNAVVGDEVKIEIKLEAY 180
Query: 181 AQ 182
AQ
Sbjct: 181 AQ 182
>ref|NP_281610.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||B81386 probable periplasmic protein Cj0420 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74256.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 190
Score = 126 bits (317), Expect = 1e-28
Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 10/188 (5%)
Query: 1 MKKALISTLFGVSLA----FAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEP 56
MKK L+S+L VSL FAK YT+DKA++ V F++KH + +G F ++ ID +P
Sbjct: 1 MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISNVKGNFKDYSAVIDFDP 60
Query: 57 NTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIY 111
+ + I + SVNT ++ RDNHL+ DFF KYP +F M KY E GK+
Sbjct: 61 ASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDMTFTMKKYEKIDNEKGKMT 120
Query: 112 GDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEV 171
G LT+ GV+K +VL+A+I + + KE + GKI R DF + S + D++
Sbjct: 121 GTLTIAGVSKDIVLDAEI-GGVAKGKDGKEKIGFSLNGKIKRSDFKFATSTSTITLSDDI 179
Query: 172 KIELKLEA 179
+ +++EA
Sbjct: 180 NLNIEVEA 187
>ref|NP_470131.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
emb|CAC96021.1| (AL596166) conserved hypothetical protein [Listeria innocua]
Length = 176
Score = 120 bits (300), Expect = 9e-27
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+ +D A+SS+ F+VKH ++ +GAF +F I+++P + ++ SV+TR +
Sbjct: 6 WNVDPAHSSIEFQVKHMMVSKVKGAFSDFTADIEMDPEDLTTAKLNFSVSAASVDTRQAQ 65
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLTLRGVTKPVVLEAKIQAPLQ 134
RD HLK+ DFF+V KYP +F TK ++ ++ GDLT+R VTKP+ LE + +
Sbjct: 66 RDGHLKSEDFFNVEKYPNVTFTATKITADGDDEYEVTGDLTIRDVTKPLTLEVSYEGTGK 125
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIGKTFS----DAVVGDEVKIELKLEA 179
+P +A+GK NRKDFG+ + ++GDEVK+ +++EA
Sbjct: 126 DPNTGNMVAGFEAKGKFNRKDFGLNYNAALETGGVLIGDEVKLNIQIEA 174
>ref|NP_464323.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAC98874.1| (AL591976) conserved hypothetical protein [Listeria monocytogenes]
Length = 176
Score = 119 bits (297), Expect = 2e-26
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+ +D A+SS+ F+VKH ++ +GAF +F I+++P + ++ SV+TR +
Sbjct: 6 WNVDPAHSSIEFQVKHMMVSKVKGAFSDFTADIEMDPEDLTSAKLNFSVAAASVDTRQAQ 65
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLTLRGVTKPVVLEAKIQAPLQ 134
RD HLK+ DFF+V KYP +F TK ++ ++ GDLT+R VTKP+ LE + +
Sbjct: 66 RDGHLKSEDFFNVEKYPNVTFTATKITADGDDEYEVTGDLTIRDVTKPLTLEVSYEGTGK 125
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIGKTFS----DAVVGDEVKIELKLEA 179
+P +A+GK NRKDFG+ + ++GDEVK+ +++EA
Sbjct: 126 DPNTGNMVAGFEAKGKFNRKDFGLNYNAALETGGVLIGDEVKLNIQIEA 174
>ref|NP_640908.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35444.1| (AE011683) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 274
Score = 100 bits (250), Expect = 6e-21
Identities = 63/181 (34%), Positives = 92/181 (50%), Gaps = 8/181 (4%)
Query: 4 ALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSV 63
A ST V +A + YT+D +++ V + HF F+ F N DG + + S
Sbjct: 81 AAASTAPAVEVA-SGTYTLDPSHTDVLAQWSHFGFSNPSAHFGNVDGTLVYDAADVTKST 139
Query: 64 FEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDG-----KIYGDLTLRG 118
+ + + +N+ K D HLK+ DFFD K+P +FK TK E + GDLT++G
Sbjct: 140 VQVTLPLSGLNSFTAKFDEHLKSGDFFDAAKFPTATFKSTKVEAAGTNKLTVTGDLTIKG 199
Query: 119 VTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLE 178
TKPVVL+ + ++PM K A I R DFG+G+ + V DEVKI + E
Sbjct: 200 QTKPVVLDVTLNGAGEHPMKKVPAAGFDATTTIKRSDFGLGQYAPN--VSDEVKIRITTE 257
Query: 179 A 179
A
Sbjct: 258 A 258
>ref|NP_287190.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_309461.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415574.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P37904|YCEI_ECOLI Protein yceI precursor
pir||E64848 yceI protein precursor - Escherichia coli
gb|AAC74140.1| (AE000207) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35854.1| (D90742) 18.7 kd protein in htrB 5'region precursor. [Escherichia
coli]
dbj|BAA35865.1| (D90743) 18.7 kd protein in htrB 5'region precursor. [Escherichia
coli]
gb|AAG55802.1|AE005316_7 (AE005316) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34857.1| (AP002555) hypothetical protein [Escherichia coli O157:H7]
Length = 191
Score = 100 bits (249), Expect = 8e-21
Identities = 69/193 (35%), Positives = 94/193 (47%), Gaps = 14/193 (7%)
Query: 1 MKKALI-----STLFGVSLAFAKPYTIDKANSSVW--FEVKHFTFNETRGAFDNFDGKID 53
MKK+L+ S +F A A Y IDK + F ++H ++ G F +FDG
Sbjct: 1 MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFT 60
Query: 54 LEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-EDG---K 109
+ I+ SV+T +RD HL++ADF + KYP+ +F T +DG
Sbjct: 61 FDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELD 120
Query: 110 IYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGD 169
I GDLTL GVTKPV LEAK+ +P K +AEGKI KDF I A
Sbjct: 121 ITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKR-AGFEAEGKIKLKDFNIKTDLGPA--SQ 177
Query: 170 EVKIELKLEAYAQ 182
EV + + +E Q
Sbjct: 178 EVDLIISVEGVQQ 190
>ref|NP_638952.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42876.1| (AE012481) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 240
Score = 99.0 bits (245), Expect = 2e-20
Identities = 57/165 (34%), Positives = 83/165 (49%), Gaps = 7/165 (4%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
YT+D ++ V + HF F+ F N DG + + S + + + +N+ K
Sbjct: 67 YTLDPTHTDVLAQWSHFGFSNPTAHFGNVDGTLVYDAADVTKSTVQVTLPLSGLNSFTAK 126
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKYEDG-----KIYGDLTLRGVTKPVVLEAKIQAPLQ 134
D HLK+ DFFD K+P +FK TK E + GDLT++ TKPVVL+ + +
Sbjct: 127 FDEHLKSGDFFDAAKFPSATFKSTKVESAGTNKLTVTGDLTIKDQTKPVVLDVTLNGAGE 186
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEA 179
+PM K A I R DFG+G+ + V DEVKI + EA
Sbjct: 187 HPMKKVPAAGFDATTTIKRSDFGVGQYAPN--VSDEVKIRITTEA 229
>ref|NP_373211.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375806.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB43785.1| (AP003138) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58849.1| (AP003366) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 171
Score = 98.2 bits (243), Expect = 4e-20
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+T D A+SS+ F++KH ++ +G+FD FD ++ + N I S+NT++
Sbjct: 4 FTFDGAHSSLEFQIKHLMVSKVKGSFDQFDVAVEGDINDFSTLKATATIIPSSINTKNEA 63
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVTKPVVLEAKIQAPLQNPMNK 139
RDNHLK+ DFF ++ K +F+ + K+ GDLT++G+T + + +NPM+
Sbjct: 64 RDNHLKSGDFFGTDEFDKITFETKSVTENKVVGDLTIKGITNEETFDVEFNGVSKNPMDG 123
Query: 140 KEFMVLQAEGKINRKDFGIGKTFSDA------VVGDEVKIELKLE 178
+ + G INR+++GI F+ A ++G +VK E E
Sbjct: 124 SQVTGVIVTGTINRENYGI--NFNQALETGGVMLGKDVKFEASAE 166
>ref|NP_299126.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||E82631 conserved hypothetical protein XF1840 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84646.1|AE004005_6 (AE004005) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 237
Score = 98.2 bits (243), Expect = 4e-20
Identities = 54/170 (31%), Positives = 87/170 (50%), Gaps = 7/170 (4%)
Query: 15 AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVN 74
A + YT+D +++V + HF F+ F N +G + + S + + + +N
Sbjct: 59 AHSGTYTLDSNHTNVLLQWNHFGFSNPSAHFGNVEGTVVYDAADVTKSTVQVTLPLSGLN 118
Query: 75 TRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGK-----IYGDLTLRGVTKPVVLEAKI 129
+ K D HLK+ DFFD K+P +FK TK + GDLT++G+TKPV L+ I
Sbjct: 119 SFTAKLDEHLKSTDFFDAAKFPSITFKSTKVVSNSTNKLAVTGDLTVKGMTKPVTLDVTI 178
Query: 130 QAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEA 179
++PM KK+ + A I R +FG+ + V DE+K+ + EA
Sbjct: 179 NGAGEHPMTKKQAIGFDANATIKRSEFGMSAYVPN--VSDEIKVRITAEA 226
>ref|NP_455651.1| (NC_003198) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
ref|NP_460128.1| (NC_003197) putative secreted protein [Salmonella typhimurium LT2]
gb|AAL20087.1| (AE008750) putative secreted protein [Salmonella typhimurium LT2]
emb|CAD08281.1| (AL627269) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 191
Score = 97.4 bits (241), Expect = 7e-20
Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 5 LISTLFGVSLAFAKPYTIDKANSSVW--FEVKHFTFNETRGAFDNFDGKIDLEPNTKMLS 62
L S LF A A Y IDK + F ++H ++ G F +FDG +
Sbjct: 10 LASLLFTTGSAVAAEYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPSAD 69
Query: 63 VFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY----EDGKIYGDLTLRG 118
I+ SV+T +RD HL++A+F +V K+P+ +F T ++ I G+LTL G
Sbjct: 70 KVNVTINTNSVDTNHAERDKHLRSAEFLNVAKFPQATFTSTSVKKEGDELDITGNLTLNG 129
Query: 119 VTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLE 178
VTKPV LEAK+ +P K +AEGKI KDF I A EV++ + +E
Sbjct: 130 VTKPVTLEAKLMGQGDDPWGGKR-AGFEAEGKIKLKDFNITTDLGPA--SQEVELIISVE 186
Query: 179 AYAQ 182
Q
Sbjct: 187 GVQQ 190
>ref|NP_647423.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB96471.1| (AP004831) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 171
Score = 97.4 bits (241), Expect = 7e-20
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 8/165 (4%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+T D A+SS+ F++KH ++ +G+FD FD ++ + N I S+NT++
Sbjct: 4 FTFDGAHSSLEFQIKHLMVSKVKGSFDQFDVAVEGDINDFSTLKATATIIPSSINTKNEA 63
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVTKPVVLEAKIQAPLQNPMNK 139
RDNHLK+ DFF ++ K +F + K+ GDLT++G+T + + +NPM+
Sbjct: 64 RDNHLKSGDFFGTDEFDKITFVTKSVSESKVVGDLTIKGITNEETFDVEFNGVSKNPMDG 123
Query: 140 KEFMVLQAEGKINRKDFGIGKTFSDA------VVGDEVKIELKLE 178
+ + G INR+++GI F+ A ++G +VK E E
Sbjct: 124 SQVTGVIVTGTINRENYGI--NFNQALETGGVMLGKDVKFEASAE 166
>ref|NP_110730.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB59353.1| (AP000991) hypothetical protein [Thermoplasma volcanium]
Length = 177
Score = 95.9 bits (237), Expect = 2e-19
Identities = 60/169 (35%), Positives = 95/169 (55%), Gaps = 9/169 (5%)
Query: 18 KPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRD 77
K +T DKA+SS+ F V+H ++ RG+F++FD +P+ E + V S+ T +
Sbjct: 5 KKWTPDKAHSSIEFVVRHMMVSKVRGSFNDFDIVFIGDPDDLAQGKAEATVRVASITTGE 64
Query: 78 RKRDNHLKTADFFDVVKYPKGSFKMT---KYEDG-KIYGDLTLRGVTKPVVLEAKIQAPL 133
RD HL++ DFF V K+P+ F T K DG KI G LT++ VTK V E +++ +
Sbjct: 65 ADRDQHLRSQDFFYVEKFPEIKFSSTDIMKAGDGYKINGKLTIKDVTKDVSFEGELEGKI 124
Query: 134 QNPMNKKEFMVLQAEGKINRKDFGIGKTFS----DAVVGDEVKIELKLE 178
++P K+ F A I+R+DFG+ + +VG+ V +E+ LE
Sbjct: 125 KDPYGKQRF-GFTARTVIDRRDFGLMWNMALDNGGILVGNTVNVEISLE 172
>ref|NP_393610.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11279.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 180
Score = 95.1 bits (235), Expect = 3e-19
Identities = 56/170 (32%), Positives = 92/170 (53%), Gaps = 10/170 (5%)
Query: 18 KPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRD 77
K + D +S+V F V+H + RG+F F+ + +P I+V SV T D
Sbjct: 5 KTWMADPVHSNVEFVVRHMMISRVRGSFKKFEIAFNGDPENLESGKATAKIEVASVFTGD 64
Query: 78 RKRDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLTLRGVTKPVVLEAKIQAP 132
RD+ L++++FF++ KYP +F+ TK E K++G+LT++ VTK V+ + ++
Sbjct: 65 NGRDDDLRSSNFFEISKYPYITFESTKIEKVSGDQYKVHGNLTIKNVTKEVIFDGELGGK 124
Query: 133 LQNPMNKKEFMVLQAEGKINRKDFGIGKTF----SDAVVGDEVKIELKLE 178
L++P + F A INR++FG+ +VGD VK+EL LE
Sbjct: 125 LKDPYGNQRF-GFSATASINRREFGLTWNMVLDNGGVMVGDVVKVELALE 173
>ref|NP_232929.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||F82448 conserved hypothetical protein VCA0539 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF96441.1| (AE004384) conserved hypothetical protein [Vibrio cholerae]
Length = 189
Score = 90.5 bits (223), Expect = 8e-18
Identities = 57/186 (30%), Positives = 95/186 (50%), Gaps = 13/186 (6%)
Query: 1 MKKALISTLFGVSLAF-----AKPYTIDK--ANSSVWFEVKHFTFNETRGAFDNFDGKID 53
MKK L++ ++ A Y ID A++S+ F+V H ++ +G F+ FDG+
Sbjct: 1 MKKTLMAVGLAAVMSIPFAANAADYVIDTKGAHASINFKVNHLGYSYIKGRFNKFDGEFS 60
Query: 54 LEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDG----- 108
+P S N+D +S+++ +RD H+++ADF D KY +FK T+ D
Sbjct: 61 YDPANIAASSVVVNVDTRSLDSNHAERDKHIRSADFIDASKYSTATFKSTEVVDKGNGQL 120
Query: 109 KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVG 168
++ GDLTL G TKP+V+ A+ Q+P + ++ KDFGI + + V
Sbjct: 121 EVKGDLTLHGQTKPIVINAEFIGAGQDPWGGQR-SGFAGTTRLELKDFGIQVMGASSYVD 179
Query: 169 DEVKIE 174
E+ +E
Sbjct: 180 MELHVE 185
>ref|NP_249114.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83593 conserved hypothetical protein PA0423 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03812.1|AE004479_7 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 191
Score = 87.8 bits (216), Expect = 5e-17
Identities = 59/185 (31%), Positives = 87/185 (46%), Gaps = 9/185 (4%)
Query: 4 ALISTLFGVSLAFAKPYTIDKANSSVW--FEVKHFTFNETRGAFDNFDGKIDLEPNTKML 61
AL S LF A A Y IDK + F +KH ++ G F++FDG +
Sbjct: 10 ALGSALFTAGQAMAADYKIDKEGQHAFIEFRIKHLGYSWLYGRFNDFDGSFTFDEKNPSA 69
Query: 62 SVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY----EDGKIYGDLTLR 117
+ I+ SV+T +RD HL++ DF +V K P +F+ T+ + I G+LTL
Sbjct: 70 DKVKVTINTNSVDTNHAERDKHLRSGDFLNVSKNPTATFESTEVKANGDSADITGNLTLN 129
Query: 118 GVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKL 177
GVTKPV ++AK+ +P + + KDFGI A EV++ L +
Sbjct: 130 GVTKPVTIKAKLIGQGDDPWGGYR-AGFEGSATLKLKDFGIKMDLGPA--SQEVELLLSV 186
Query: 178 EAYAQ 182
E Q
Sbjct: 187 EGIRQ 191
>ref|NP_405852.1| (NC_003143) putative exported protein [Yersinia pestis]
emb|CAC91120.1| (AJ414152) putative exported protein [Yersinia pestis]
Length = 192
Score = 86.7 bits (213), Expect = 1e-16
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 4 ALISTLFGVSLAFAKPYTIDKANSSVW--FEVKHFTFNETRGAFDNFDGKIDLEPNTKML 61
+L + +F A A Y IDK + F +KH ++ G+F++FDG +
Sbjct: 10 SLGALMFTAGSAVAADYKIDKEGQHAFIEFRIKHLGYSWLYGSFNDFDGSFTFDDKNPAA 69
Query: 62 SVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMT---KYEDG-KIYGDLTLR 117
I+ SV+T +RD HL+ F +V K+P+ +F+ T K DG + G+LTL
Sbjct: 70 DKVNVVINTNSVDTNHAERDKHLRGKSFLNVAKFPQATFESTEVKKNGDGYSVIGNLTLN 129
Query: 118 GVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKL 177
GVTKPV LE+K+ +P +A G I KDF I A EV++ L +
Sbjct: 130 GVTKPVTLESKLTGQGNDPWGGYR-AGFEANGNIKLKDFNITTDLGPA--SQEVELILSV 186
Query: 178 E 178
E
Sbjct: 187 E 187
>ref|NP_629667.1| (NC_003888) conserved hypothetical protein SC1C2.14c [Streptomyces
coelicolor A3(2)]
pir||T29063 hypothetical protein SC1C2.14c - Streptomyces coelicolor
emb|CAA19981.1| (AL031124) conserved hypothetical protein SC1C2.14c [Streptomyces
coelicolor A3(2)]
Length = 185
Score = 85.1 bits (209), Expect = 3e-16
Identities = 48/172 (27%), Positives = 89/172 (50%), Gaps = 10/172 (5%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
YT+D A++++ F +H +G F +F G + L+ S +I + S++T
Sbjct: 14 YTVDPAHTTIGFTARHAMVTNVKGKFLDFTGTLHLDGADPSRSTASLDITMDSIDTGSPD 73
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLTLRGVTKPVVLEAKIQAPLQ 134
RD HLK++DFF+ +YP +F+ TK E D +I GDL++ G TKP+ ++ + +
Sbjct: 74 RDGHLKSSDFFNTGEYPTMTFRSTKAESLGGDDYRITGDLSILGTTKPLTIDLEFNGAAK 133
Query: 135 NPMNKKEFMVLQAEGKINRKDFGI----GKTFSDAVVGDEVKIELKLEAYAQ 182
+P E + + + +I R ++G+ +V D++K+ + A Q
Sbjct: 134 DPFG-NERVGFEGKAEIKRSEWGLTWNAALETGGVLVSDKIKLNFDISAIRQ 184
>ref|NP_520838.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD16424.1| (AL646071) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 198
Score = 83.6 bits (205), Expect = 1e-15
Identities = 63/192 (32%), Positives = 99/192 (50%), Gaps = 16/192 (8%)
Query: 3 KALISTLFGVSL--AFAKP--YTIDKANSSVWFEVKHFT-FNETRGAFDNFDGKIDLEPN 57
+ L++ L V+ AFA P Y +D +++ FE H ++ RG F+ +G + L+
Sbjct: 4 RTLVAALSAVAATAAFAAPVTYQLDPSHTYPSFEADHMGGLSKWRGKFEKSNGVVTLDRE 63
Query: 58 TKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFK--MTKYEDG---KIYG 112
K ++ + + S++ K + H K D FDV KYP +FK TK++ + G
Sbjct: 64 AKAGTI-DVTVQTDSIDFGFAKMNEHAKGPDLFDVTKYPTATFKGTFTKFKGDAPTEAEG 122
Query: 113 DLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGI--GKTFSDAVVGDE 170
LTL GVTKPV LE +Q+PM K+E AE K NR +FG+ GK + + E
Sbjct: 123 QLTLHGVTKPVKLEIDSFKCMQHPMLKREVCGADAEMKFNRDEFGLDYGKQYGFKM---E 179
Query: 171 VKIELKLEAYAQ 182
K+ +++E Q
Sbjct: 180 TKLRIQVEGLKQ 191
>gb|AAD42411.1|AF157493_19 (AF157493) hypothetical protein [Zymomonas mobilis]
Length = 204
Score = 83.6 bits (205), Expect = 1e-15
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 17 AKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTR 76
A Y ++ ++ V F V HF F +G F G++DL+ S I V SV T
Sbjct: 35 AGSYDVEPYHTQVAFSVLHFGFTYYQGIFSQISGRLDLDTQNPAKSSLAVTIPVASVLTT 94
Query: 77 DRKRDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLTLRGVTKPVVLEAKIQA 131
K D+ LK +FD K+P+ F T+ + + G+LTL G+TKP +L+ +
Sbjct: 95 SSKLDDELKGDQWFDSAKFPEARFVSTQIRQMGKNEAVVTGNLTLHGITKPEILKVRFVG 154
Query: 132 PLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIEL 175
NP++KK + + I R DFGI KT+ V D V + +
Sbjct: 155 AGINPLDKKYTAGFEGDTTIKRSDFGI-KTYV-PYVSDNVTLHI 196
>ref|NP_420922.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24090.1| (AE005884) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 192
Score = 82.8 bits (203), Expect = 2e-15
Identities = 59/195 (30%), Positives = 92/195 (46%), Gaps = 16/195 (8%)
Query: 1 MKKALISTLFGVSLAFAKP--------YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKI 52
MK+ L + + G +L+ A Y +D +++ F + F F G F +G I
Sbjct: 1 MKRLLAAMIAGAALSVATAPAFAAEVAYKLDSSHTQTSFAIDRFGFTSILGMFAQSEGTI 60
Query: 53 DLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-----D 107
L+ S E + V S+ + + RD HLK + + K P +FK TK E
Sbjct: 61 WLDEAAPEKSRVEATVTVDSLLSANTARDEHLKAERWLNAAKNPTMTFKSTKVEKTGDTT 120
Query: 108 GKIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVV 167
K+ GD+T+ GVT+PV L+ K+ + N+K+ G+I+RK F G T +
Sbjct: 121 AKVTGDMTIMGVTQPVTLDVKLN-KIGVGNNQKKQAGFTITGQISRKAF--GHTIGAGAI 177
Query: 168 GDEVKIELKLEAYAQ 182
GD V I ++ A AQ
Sbjct: 178 GDAVNIRIEALAVAQ 192
>ref|NP_421410.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24578.1| (AE005928) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 230
Score = 82.0 bits (201), Expect = 3e-15
Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 17 AKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVN-- 74
A YT+DK ++S+ F+V H F+ +F +FD K+ + S E I+ S+
Sbjct: 45 AGDYTLDKTHASLVFKVSHLGFSNYTASFADFDAKLQFDQANAAASALEATINPTSLTLP 104
Query: 75 TRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLTLRGVTKPVVLEAKI 129
L + + YP +FK TK E GK+ GDLTL GVTKPV LE
Sbjct: 105 APPPGFQKDLTGPQWLNAGAYPTITFKSTKIETTGPDTGKVTGDLTLHGVTKPVTLEVTY 164
Query: 130 QAPLQ-NPMNKKEFMVLQAEGKINRKDFGI-------GKTFSDAVVGDEVKIELKLE 178
+PM+ + A+G R DFGI G T VGDEV++E++ E
Sbjct: 165 NGGYAGHPMDPNARIGFSAKGAFKRSDFGIAYGLPAPGATMG---VGDEVQVEIEAE 218
>ref|NP_600396.1| (NC_003450) COG2353:Uncharacterized BCR [Corynebacterium
glutamicum]
dbj|BAB98563.1| (AP005277) Uncharacterized BCR [Corynebacterium glutamicum ATCC
13032]
Length = 179
Score = 82.0 bits (201), Expect = 3e-15
Identities = 49/165 (29%), Positives = 85/165 (50%), Gaps = 10/165 (6%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+T+D A++ + F +H + RG F + I ++ S + I SV T +
Sbjct: 8 WTLDPAHTEIKFVARHAMVTKVRGEFTEYTDSIVVDAENPENSSAKVVIKTASVTTGNAD 67
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLTLRGVTKPVVLEAKIQAPLQ 134
RD H+K DFF V K+P+ +F+ T + +G + GDLT+R TK V L+ ++ +
Sbjct: 68 RDAHVKGDDFFAVDKFPEMTFEATSFVIKNENEGTVTGDLTIRDTTKSVTLDVEVGGVAE 127
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIG----KTFSDAVVGDEVKIEL 175
+P + +A +INRKDFG+ + +V +++KIE+
Sbjct: 128 DPFGNTR-LGFEASTEINRKDFGVDFQAPLSTGGVLVSEKIKIEI 171
>ref|NP_460580.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
LT2]
gb|AAL20539.1| (AE008771) putative periplasmic protein [Salmonella typhimurium
LT2]
Length = 191
Score = 79.0 bits (193), Expect = 2e-14
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 1 MKKALISTLFGVSL---AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPN 57
MKK+ + L + L A A Y D +++ F + HF + G F G++ +P
Sbjct: 4 MKKSFLGALLSLGLLSAAHADVYKFDNTHTNAVFNIDHFQTSTNHGGFYAISGELKYQPE 63
Query: 58 TKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTK--YEDGK---IYG 112
K ++ I V ++NT DNH++++D D KYP+ FK TK +ED K I G
Sbjct: 64 -KQVAEMRVTIPVSALNTGVDAFDNHIRSSDILDAEKYPEMVFKSTKWHFEDNKPVSIDG 122
Query: 113 DLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVK 172
LT++GVTKPV L +P+ K + +I+R +GI D + V
Sbjct: 123 LLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCGGDFVTQIDRTQWGI-DYLVDMGMTKVVD 181
Query: 173 IELKLEAYAQ 182
I+++ EA Q
Sbjct: 182 IKIQAEAVKQ 191
>ref|NP_422186.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25354.1| (AE005999) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 213
Score = 75.9 bits (185), Expect = 2e-13
Identities = 50/168 (29%), Positives = 78/168 (45%), Gaps = 11/168 (6%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDR- 78
Y +DK ++SV ++KH F+ + F D + +P + +D S++T
Sbjct: 44 YVLDKTHASVVGKIKHMGFSNYQFRFTKVDAEFTYDPKAPQDTKINVTVDPASIDTGTDA 103
Query: 79 ---KRDNHLKTADFFDVVKYPKGSFKMTKYEDG-----KIYGDLTLRGVTKPVVLEAKIQ 130
K + L + + K+P +F TK E G K+YGD TLRGVTKP+VL+
Sbjct: 104 FGLKFNKELAGDGWLEANKFPTATFVSTKVEPGAGQTGKVYGDFTLRGVTKPIVLDVTFN 163
Query: 131 APLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLE 178
+ A I R DFG+ K +VGDEV + +++E
Sbjct: 164 GVGSGFVPGSVKTGFSASTTIKRSDFGVSKYI--PMVGDEVALSIEVE 209
>ref|NP_455876.1| (NC_003198) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD01704.1| (AL627270) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 191
Score = 75.1 bits (183), Expect = 3e-13
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 1 MKKALISTLFGVSL---AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPN 57
MKK+ + L + L A A Y D +++ F + F + G F G++ +P
Sbjct: 4 MKKSFLGALLSLGLLSAAHADVYKFDNTHTNAVFNIDRFQTSTNHGGFYAISGELKYQPE 63
Query: 58 TKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTK--YEDGK---IYG 112
K ++ I V ++NT DNH++++D D KYP+ FK TK +ED K I G
Sbjct: 64 -KQVAEMRVTIPVSALNTGVDAFDNHIRSSDILDAEKYPEIVFKSTKWHFEDNKPVSIDG 122
Query: 113 DLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVK 172
LT++GVTKPV L +P+ K + +I+R +G+ D + V
Sbjct: 123 LLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCGGDFVTQIDRTQWGV-DYLVDMGMTKVVD 181
Query: 173 IELKLEAYAQ 182
I+++ EA Q
Sbjct: 182 IKIQAEAVKQ 191
>ref|NP_628212.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC32370.1| (AL583945) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 273
Score = 75.1 bits (183), Expect = 3e-13
Identities = 49/178 (27%), Positives = 88/178 (48%), Gaps = 10/178 (5%)
Query: 11 GVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDV 70
G L P+T+D A+SSV +H + RG F +F +++ P+ S E I
Sbjct: 88 GTELPPPGPWTVDPAHSSVAAVAQHLGISSVRGRFTDFAATVEIAPDDVGKSRVEAVIKA 147
Query: 71 KSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYED-----GKIYGDLTLRGVTKPVVL 125
S++T + RD HL++ADF DV +YP+ +++ T + ++G+L L GV + V L
Sbjct: 148 ASIDTGNGMRDTHLRSADFLDVERYPEITYRSTGVSEVGPDRWTVHGELGLHGVVREVDL 207
Query: 126 EAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKT----FSDAVVGDEVKIELKLEA 179
+ +P +A +++R+DF + A +G +++EL ++A
Sbjct: 208 DLAHLGTGADPWGGTR-AAFRATTELHREDFAMNYNQVVQAGIAAIGTTLRVELDVQA 264
>ref|NP_626804.1| (NC_003888) conserved hypothetical protein SCC123.04c [Streptomyces
coelicolor A3(2)]
emb|CAB66244.1| (AL136518) conserved hypothetical protein SCC123.04c [Streptomyces
coelicolor A3(2)]
Length = 293
Score = 73.9 bits (180), Expect = 8e-13
Identities = 54/190 (28%), Positives = 95/190 (49%), Gaps = 19/190 (10%)
Query: 6 ISTLFGVSLAFAKP--------YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPN 57
+++L V+L A+P + I+ A+SS+ F +H G F++F G + + +
Sbjct: 101 LASLGDVTLQVAQPPELPAPGDWEIEPAHSSIAFTARHIGLARIHGRFNSFAGAVRIADD 160
Query: 58 TKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYG 112
+ S ID S++T + RD+HL++ADF DV +YP F ++ + G
Sbjct: 161 MEQ-SAMHVVIDAASIDTNVKMRDDHLRSADFLDVQRYPTLEFYSDRFAHRGGNRWAVTG 219
Query: 113 DLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIG----KTFSDAVVG 168
L+L GVT+ V L+ + L N M + +A +++R DF + T AVVG
Sbjct: 220 ALSLHGVTRTVTLDTEYLG-LGNGMEGETRAACRATTELHRDDFTVSWQTMLTRGIAVVG 278
Query: 169 DEVKIELKLE 178
++I+L ++
Sbjct: 279 PSIRIDLDVQ 288
>ref|NP_518911.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD14492.1| (AL646061) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 189
Score = 72.0 bits (175), Expect = 3e-12
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 15 AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVN 74
A A P+T D A+++V+F HF RG FD DG ID F+ ID S+N
Sbjct: 16 ALAAPFTPDLAHTAVYFGASHFERTTLRGRFDKIDGAIDFNEADNQ-GGFDFTIDAASIN 74
Query: 75 TRDRKRDNHLKTADFFDVVKYPKGSFKMTKY--EDGK---IYGDLTLRGVTKPVVLEAKI 129
TR + D LK+ F D ++P + ++ E GK + LTL GVT+PV L+ +
Sbjct: 75 TRLPELDGVLKSEQFLDAAQFPIVRLRSDRFVVEGGKLVAVEARLTLHGVTQPVRLDVR- 133
Query: 130 QAPLQNPMNKKEFMVLQAEGKINRKDF-------GIGKTFSDAVVGDEVKIELKLEA 179
N + ++ A + DF G T VGD V +E+ +EA
Sbjct: 134 ------RFNCGDIKLIAATLHVCGGDFHLAIRRSAFGMTRFLPEVGDRVDLEISVEA 184
>ref|NP_284182.1| (NC_003116) putative periplasmic protein [Neisseria meningitidis
Z2491]
pir||F81836 probable periplasmic protein NMA1457 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84692.1| (AL162756) putative periplasmic protein [Neisseria meningitidis
Z2491]
Length = 187
Score = 72.0 bits (175), Expect = 3e-12
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 9/189 (4%)
Query: 1 MKKALISTLFGVSL--AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNT 58
MKK +I+ L ++ A A Y +D+ +++ F + HF + G F G ++ +
Sbjct: 1 MKKIIIAALAAAAIGTASAATYKVDEYHANARFSIDHFNTSTNVGGFYGLTGSVEFD-QA 59
Query: 59 KMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-DGK----IYGD 113
K + I V ++ + + +HLK+AD FD +YP F TK+ +GK + G+
Sbjct: 60 KRDGKIDITIPVANLQSGSQHFTDHLKSADIFDAAQYPDIRFVSTKFNFNGKKLVSVDGN 119
Query: 114 LTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKI 173
LT+ G T PV L+A+ Q+PM K E I+R +G+ + + V+I
Sbjct: 120 LTMHGKTAPVKLKAEKFNCYQSPMLKTEVCGGDFSTTIDRTKWGMDYLVNVGMT-KSVRI 178
Query: 174 ELKLEAYAQ 182
++++EA Q
Sbjct: 179 DIQIEAAKQ 187
>ref|NP_274064.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81130 conserved hypothetical protein NMB1030 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41429.1| (AE002453) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 187
Score = 72.0 bits (175), Expect = 3e-12
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
Query: 1 MKKALISTLFG--VSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNT 58
MKK + + L +S A A Y +D+ +++ F + HF + G F G ++ +
Sbjct: 1 MKKIIFAALAAAAISTASAATYKVDEYHANARFAIDHFNTSTNVGGFYGLTGSVEFD-QA 59
Query: 59 KMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-DGK----IYGD 113
K + I + ++ + + +HLK+AD FD +YP F TK+ +GK + G+
Sbjct: 60 KRDGKIDITIPIANLQSGSQHFTDHLKSADIFDAAQYPDIRFVSTKFNFNGKKLVSVDGN 119
Query: 114 LTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKI 173
LT+ G T PV L+A+ Q+PM K E I+R +G+ + + V+I
Sbjct: 120 LTMHGKTAPVKLKAEKFNCYQSPMEKTEVCGGDFSTTIDRTKWGMDYLVNVGMT-KSVRI 178
Query: 174 ELKLEAYAQ 182
++++EA Q
Sbjct: 179 DIQIEAAKQ 187
>ref|NP_631653.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC16714.1| (AL450289) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 216
Score = 69.3 bits (168), Expect = 2e-11
Identities = 48/169 (28%), Positives = 83/169 (48%), Gaps = 10/169 (5%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
+TID+ +S + F V+H RGAF ++D + + S + I V SV+T +
Sbjct: 45 WTIDRPHSRIGFSVRHAMVTTVRGAFTDYDSTLHFDGARPSESRADLVIRVASVDTGVEQ 104
Query: 80 RDNHLKTADFFDVVKYPKGSFKMT-----KYEDGKIYGDLTLRGVTKPVVLEAKIQAPLQ 134
RD HL DFFD ++P+ +F T E ++ GDLT+R T+PV L+ +
Sbjct: 105 RDAHLVGKDFFDARRHPEMTFHSTSTTQESAESFRMTGDLTIRDTTRPVELQLDYLGSVV 164
Query: 135 NPMNKKEFMVLQAEGKINRKDFGI----GKTFSDAVVGDEVKIELKLEA 179
+P E I+R+D+G+ ++V ++V+++ + A
Sbjct: 165 DPFG-YERAGFDGTTTIDRRDWGLVYNQRLEAGGSMVSEKVRLQFDISA 212
>ref|NP_643341.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37877.1| (AE011945) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 220
Score = 67.4 bits (163), Expect = 7e-11
Identities = 46/185 (24%), Positives = 87/185 (46%), Gaps = 9/185 (4%)
Query: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
+ AL++T + A A+ Y +D ++ V F V+H F++ G G + +P+
Sbjct: 9 VSSALVATSLAATAAPAR-YALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLVFDPDDWA 67
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLT 115
+ + + + + D K + + D ++P F T E K+ G+LT
Sbjct: 68 AARLDVTVPLHRADLGDAKWNQATLARNLLDAERFPDAHFVSTHVEASGENHAKVTGNLT 127
Query: 116 LRGVTKPVVLEAKIQAPLQNPMNK-KEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIE 174
L GVT+PV L+ + A ++P+ + A ++R +FGI S ++GD V++
Sbjct: 128 LHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSATATLSRSEFGIDAWKS--MIGDSVELR 185
Query: 175 LKLEA 179
++ EA
Sbjct: 186 IEAEA 190
>ref|NP_638197.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42121.1| (AE012398) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 225
Score = 67.4 bits (163), Expect = 7e-11
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 4 ALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSV 63
AL+ T + A + Y +D ++ V F V+H F++ G G + +P+ +
Sbjct: 12 ALVLTSLAATAAPVR-YALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLVFDPDDWAAAT 70
Query: 64 FEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLTLRG 118
E + ++ + D K + + D ++P F TK E K+ G+LTL G
Sbjct: 71 LEVTVPLRRADLGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHAKVTGNLTLHG 130
Query: 119 VTKPVVLEAKIQAPLQNPMNK-KEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKL 177
VT+PV L+ + A ++P+ + A ++R FG+ S ++GD V++ ++
Sbjct: 131 VTRPVTLDVTLNALKRHPLPPFRRTAGFSATATLSRAAFGVDAWKS--MIGDTVELRIEA 188
Query: 178 EA 179
EA
Sbjct: 189 EA 190
>ref|NP_298618.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||C82696 conserved hypothetical protein XF1329 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84138.1|AE003965_11 (AE003965) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 234
Score = 66.6 bits (161), Expect = 1e-10
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 8/188 (4%)
Query: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
M AL+ T+ V A Y +D ++ + F + H ++ G G +D +P+
Sbjct: 7 MLLALLLTVPLVGTAATTRYVLDPVHTRIMFVIDHAGISKALGTVSGSTGTLDFDPDNWS 66
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLT 115
+ + I ++ V+ D K + D YP+ F T+ +G+ G LT
Sbjct: 67 NAQLDVRIPLQRVDLGDAKWNKATLAQGLLDTAHYPEAHFVSTQVTATSPSNGQAIGQLT 126
Query: 116 LRGVTKPVVLEAKIQAPLQNPMNK-KEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIE 174
L G+T+ VVL+ + ++P+ + A ++R FGI S ++GDEV++
Sbjct: 127 LHGITREVVLDITLYGIKRHPLPPFRRTAGFSANTTLSRSVFGINAWKS--MIGDEVQLR 184
Query: 175 LKLEAYAQ 182
+++EA Q
Sbjct: 185 IEVEAVRQ 192
>ref|NP_522799.1| (NC_003296) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD18389.1| (AL646083) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 195
Score = 65.1 bits (157), Expect = 4e-10
Identities = 48/169 (28%), Positives = 80/169 (46%), Gaps = 8/169 (4%)
Query: 15 AFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVN 74
AFA + I+ ++ + F+V H +T G F F+ +++ + + ID S++
Sbjct: 25 AFAA-WEIEPTHTHISFQVGHLGLTKTPGIFRKFETQLNFDDKDIEAASVTIAIDTASID 83
Query: 75 TRDRKRDNHLKTADFFDVVKYPKGSFKMT--KYEDGKIY---GDLTLRGVTKPVVLEAKI 129
T + RD L+ + D P+ +F T ++ +G Y G+LT+RG T PV + +
Sbjct: 84 TANDLRDAELRGPTWLDARANPRITFVSTSVRHAEGNHYVISGNLTVRGKTLPVAFQTTL 143
Query: 130 QAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLE 178
A NP + + KI R DFGI A + DEV + + LE
Sbjct: 144 TARTVNPWLQVPAIGFVGSTKIKRSDFGIAS--FPAAISDEVDLNIALE 190
>ref|NP_520839.1| (NC_003295) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD16425.1| (AL646071) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 189
Score = 59.3 bits (142), Expect = 2e-08
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 45 FDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTK 104
F FD + P S + +IDV SV+ D+ ++ LK D+FD KYPK +F +
Sbjct: 52 FGKFDAAVSYNPANLAASTAKVDIDVSSVDVGDKAYNDELKKKDWFDAAKYPKATFVSSA 111
Query: 105 YEDG-----KIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIG 159
++ G ++ G LT++GVT+ V ++ + + + + K N G G
Sbjct: 112 FKPGAGGKVEVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPI-----KRNAFHVGDG 166
Query: 160 KTFSDAVVGDEVKIELKL 177
+ +VV D+V I+ ++
Sbjct: 167 EWKDTSVVADDVTIKFRV 184
>ref|NP_298616.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||A82696 conserved hypothetical protein XF1327 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84136.1|AE003965_9 (AE003965) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 189
Score = 56.6 bits (135), Expect = 1e-07
Identities = 39/122 (31%), Positives = 58/122 (46%), Gaps = 13/122 (10%)
Query: 43 GAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKM 102
G F F ++ +PN + + I + T D+ RD L++ADFF+V K+ G ++
Sbjct: 51 GTFPGFYTQMSFDPNDLSKAHLDVTIPLTHAKTGDKDRDATLQSADFFNVSKFATGHYQA 110
Query: 103 TKY-----EDGKIYGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFG 157
+K+ + G L L G+TKPV L P P VL + +NR DFG
Sbjct: 111 SKFHALGHDKYATDGTLELHGMTKPVTL-TFTWTPGTQP-------VLNGKATVNRLDFG 162
Query: 158 IG 159
IG
Sbjct: 163 IG 164
>ref|NP_631168.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC04213.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 198
Score = 56.2 bits (134), Expect = 2e-07
Identities = 33/123 (26%), Positives = 57/123 (45%), Gaps = 5/123 (4%)
Query: 9 LFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNI 68
+ G A YTID +S++ F V+H RG FD F+G + L+ S ++
Sbjct: 11 VLGAHPAVTGAYTIDPVHSTIGFSVRHAMITNVRGRFDRFEGLLVLDGADPSRSKAYVSV 70
Query: 69 DVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKY-----EDGKIYGDLTLRGVTKPV 123
S++T RD HL DFFD +P +F ++ ++ G L ++ + P+
Sbjct: 71 QTDSMDTGAADRDAHLAGPDFFDSATFPLMTFHSAGIIPLGDDEFRLTGSLRIKDIELPL 130
Query: 124 VLE 126
++
Sbjct: 131 DID 133
>ref|NP_532177.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL42493.1| (AE009108) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 188
Score = 52.0 bits (123), Expect = 3e-06
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
Y ID S + F + +GA + G+ D++P+ S E +++ SV T +
Sbjct: 31 YRIDPT-SHIGFSIDQVAGPGIKGAILDISGRFDIDPDQPAKSYVEISLNPSSVKTGQER 89
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTK-YEDGK----IYGDLTLRGVTKPVVLEAKIQAPLQ 134
+N LK++ F++ YP+ F+ + +DG + G LT RGV++P A
Sbjct: 90 VENFLKSSAVFNIAAYPQIVFRSNRVIQDGPRSAVVEGILTARGVSRPETFHATFVE--- 146
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIG 159
+K + G + R +G+G
Sbjct: 147 ---QQKGSVTFHVTGNVPRLPYGMG 168
>ref|NP_354493.1| (NC_003062) AGR_C_2742p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK87278.1| (AE008073) AGR_C_2742p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 199
Score = 52.0 bits (123), Expect = 3e-06
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 20 YTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRK 79
Y ID S + F + +GA + G+ D++P+ S E +++ SV T +
Sbjct: 42 YRIDPT-SHIGFSIDQVAGPGIKGAILDISGRFDIDPDQPAKSYVEISLNPSSVKTGQER 100
Query: 80 RDNHLKTADFFDVVKYPKGSFKMTK-YEDGK----IYGDLTLRGVTKPVVLEAKIQAPLQ 134
+N LK++ F++ YP+ F+ + +DG + G LT RGV++P A
Sbjct: 101 VENFLKSSAVFNIAAYPQIVFRSNRVIQDGPRSAVVEGILTARGVSRPETFHATFVE--- 157
Query: 135 NPMNKKEFMVLQAEGKINRKDFGIG 159
+K + G + R +G+G
Sbjct: 158 ---QQKGSVTFHVTGNVPRLPYGMG 179
>ref|NP_110884.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB59511.1| (AP000992) hypothetical protein [Thermoplasma volcanium]
Length = 172
Score = 51.2 bits (121), Expect = 5e-06
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 21 TIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKR 80
T++KA S + F + H ++ G F+ F G I+ + E +ID +S+ T + R
Sbjct: 9 TLNKAKSQISFTIDHLVISKVVGKFNTFGGYIE-TCGDLCVDYAELDIDSESLETGNSVR 67
Query: 81 DNHLKTADFFDVVKYPK-----GSFKMTKYEDGKIYGDLTLRGVTKPVVLEA-KIQAPLQ 134
D +L+ ++F+ KYP+ + K+ Y + ++ ++ + K + + + L+
Sbjct: 68 DRNLRGKNYFNCKKYPEILCTVRNVKLKNYFTNTVEVNVKIKDIEKTLKFDLFLLSYSLK 127
Query: 135 NPMNKKEFMVLQAEGKINRKDFGI---GKTFSDAVVGDEVKIELKL 177
N + ++ GKIN DF + AV+G E ++E L
Sbjct: 128 N-------ISVRVIGKINTGDFNLKWQSPFIPSAVIGSEARVEAYL 166
>ref|NP_422185.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25353.1| (AE005999) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 427
Score = 49.3 bits (116), Expect = 2e-05
Identities = 40/144 (27%), Positives = 60/144 (40%), Gaps = 14/144 (9%)
Query: 43 GAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKM 102
G F + +I P S +D+ S T D +RD L DF D +PK F
Sbjct: 288 GRFQRWTAEILFSPEALDRSEVTVGVDLASTETGDAQRDASLTGEDFLDTADHPKAVFTA 347
Query: 103 TKYE---DGKIYGD--LTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFG 157
TK+ +G+ D L LRGV KP+ L ++ + ++R FG
Sbjct: 348 TKFRKTGEGRYVADGTLDLRGVKKPLSLPFSLKI-------DGDTATASGVTTLDRTTFG 400
Query: 158 I--GKTFSDAVVGDEVKIELKLEA 179
+ G+ S + +VK+ KL A
Sbjct: 401 VGQGEWASTDEIAAQVKVSFKLTA 424
>ref|NP_643343.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37879.1| (AE011945) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 189
Score = 48.9 bits (115), Expect = 3e-05
Identities = 37/122 (30%), Positives = 55/122 (44%), Gaps = 13/122 (10%)
Query: 43 GAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKM 102
G F FD + +P + + I + S + + RD+ L+ DFF+V K+ ++
Sbjct: 51 GKFPGFDTTLSFDPANLAGAKLDVRIPLASAVSGNNDRDSTLQGPDFFNVAKFATARYRA 110
Query: 103 TKYE--DGKIY---GDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFG 157
K+ G Y G L LRGV+KPV L P P VL + + R DFG
Sbjct: 111 DKFRALGGNQYAADGTLELRGVSKPVTL-TFTWTPGAQP-------VLAGKAVVKRLDFG 162
Query: 158 IG 159
+G
Sbjct: 163 VG 164
>ref|NP_638199.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42123.1| (AE012398) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 189
Score = 48.5 bits (114), Expect = 3e-05
Identities = 48/165 (29%), Positives = 71/165 (42%), Gaps = 24/165 (14%)
Query: 4 ALISTLFGVSLAFAKPYTIDKANSSVWFEVKH----FTFNETRGAFDNFDGKIDLEPNTK 59
AL++T F + A Y + SS+ F K+ FT G F FD + +P
Sbjct: 15 ALVAT-FAAAPVLAADY-VQAPGSSLVFASKYDGEVFT-----GTFPGFDTTLSFDPANL 67
Query: 60 MLSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE--DGKIY---GDL 114
+ + I + + + RD+ L+ DFF+V K+ + K+ G Y G L
Sbjct: 68 AGAKLDVRIPLAGAKSGNGDRDSTLQGPDFFNVAKFATARYHAEKFRALGGNQYAADGTL 127
Query: 115 TLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIG 159
LRGV+KPV L P P VL + + R DFG+G
Sbjct: 128 ELRGVSKPVTL-TFTWTPGAQP-------VLAGKATVKRLDFGVG 164
>ref|NP_640550.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35086.1| (AE011644) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 190
Score = 46.6 bits (109), Expect = 1e-04
Identities = 34/113 (30%), Positives = 52/113 (45%), Gaps = 7/113 (6%)
Query: 14 LAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSV 73
+A K +ID A S FE+K + G F F G + + + F + +
Sbjct: 20 MAQQKVQSIDPAQSRFGFEIKTRFGTKIEGFFPRFRGDVVTLADGRQQVRFRLDATQVEI 79
Query: 74 NTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYED------GKIYGDLTLRGVT 120
+DR + ++ DFFDV +YP F+ Y D G I G+LT+RG+T
Sbjct: 80 PGKDRYT-SWMRGEDFFDVAQYPVVEFESLPYVDEVVKQGGDIVGNLTIRGIT 131
>ref|NP_295011.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75413 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10858.1|AE001976_1 (AE001976) conserved hypothetical protein [Deinococcus radiodurans]
Length = 203
Score = 41.6 bits (96), Expect = 0.004
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 72 SVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYE-----DGKIYGDLTLRGVTKPVVLE 126
S++T + +RD HL DFFDV +YP F+ E + G L+L G T P
Sbjct: 3 SISTMNAQRDAHLLAPDFFDVAQYPTMVFESDTVEVLTSHSFMVRGHLSLHGQTHPYEFH 62
Query: 127 AKIQAPLQNPMNKKEFMVLQAEGKINRKDFGI----GKTFSDAVVGDEVKIELKLEAYAQ 182
+ P++ + + EG + R +G+ + D+V + + ++ Q
Sbjct: 63 LDVTQPVRGLYGEMR-IGADMEGYLRRSTWGLKWNQTLELGGLALSDDVNVRVNIQVTPQ 121
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,192,839
Number of Sequences: 1026957
Number of extensions: 4442025
Number of successful extensions: 8580
Number of sequences better than 1.0e-02: 47
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8502
Number of HSP's gapped (non-prelim): 48
length of query: 182
length of database: 324,149,939
effective HSP length: 114
effective length of query: 68
effective length of database: 207,076,841
effective search space: 14081225188
effective search space used: 14081225188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 93 (40.4 bits)