BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645902|ref|NP_208081.1| hypothetical protein
[Helicobacter pylori 26695]
         (161 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208081.1|  (NC_000915) hypothetical protein [Helicoba...   333  3e-91
ref|NP_223927.1|  (NC_000921) putative [Helicobacter pylori ...   324  2e-88
ref|NP_207475.1|  (NC_000915) hypothetical protein [Helicoba...   227  4e-59
ref|NP_223340.1|  (NC_000921) putative [Helicobacter pylori ...   221  3e-57

>ref|NP_208081.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64681 hypothetical protein HP1289 - Helicobacter pylori (strain 26695)
 gb|AAD08365.1| (AE000633) H. pylori predicted coding region HP1289 [Helicobacter
           pylori 26695]
          Length = 161

 Score =  333 bits (855), Expect = 3e-91
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MNVKNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60
           MNVKNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL
Sbjct: 1   MNVKNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60

Query: 61  LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
           LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA
Sbjct: 61  LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120

Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
           AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW
Sbjct: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161



>ref|NP_223927.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71832 hypothetical protein jhp1209 - Helicobacter pylori (strain J99)
 gb|AAD06811.1| (AE001547) putative [Helicobacter pylori J99]
          Length = 161

 Score =  324 bits (831), Expect = 2e-88
 Identities = 154/161 (95%), Positives = 159/161 (98%)

Query: 1   MNVKNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60
           MN+K RLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL
Sbjct: 1   MNIKKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60

Query: 61  LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
           LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLT+PFIA
Sbjct: 61  LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIA 120

Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
           AIHE+SAY GHPSNFL+EGLV+LGLVCVFGICSRLCAKLGW
Sbjct: 121 AIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW 161



>ref|NP_207475.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64605 hypothetical protein HP0681 - Helicobacter pylori (strain 26695)
 gb|AAD14887.1| (AE000581) H. pylori predicted coding region HP0681 [Helicobacter
           pylori 26695]
          Length = 168

 Score =  227 bits (578), Expect = 4e-59
 Identities = 117/161 (72%), Positives = 131/161 (80%), Gaps = 7/161 (4%)

Query: 4   KNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63
           K RLSDWEY+WA+ALVY  CISI  RIFYDI+GSASD +FDPK SYY+WLV LIAALLSN
Sbjct: 12  KERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVALIAALLSN 71

Query: 64  LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
           LLF+P+GR   Y   +    +P+F KAIFKARFFGAFY+AVLGSRLRDFYVMLLT+PFIA
Sbjct: 72  LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDFYVMLLTMPFIA 131

Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
           AIHEVSAY GHPSN L+EGLVILG    F    +LCAK GW
Sbjct: 132 AIHEVSAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168



>ref|NP_223340.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71908 hypothetical protein jhp0622 - Helicobacter pylori (strain J99)
 gb|AAD06202.1| (AE001494) putative [Helicobacter pylori J99]
          Length = 168

 Score =  221 bits (562), Expect = 3e-57
 Identities = 114/161 (70%), Positives = 130/161 (79%), Gaps = 7/161 (4%)

Query: 4   KNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63
           K RLSD EY+WA+ALVY  CISI  RIFYDI+GSASD +FDPK SYY+WLVGLIAALLSN
Sbjct: 12  KERLSDLEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVGLIAALLSN 71

Query: 64  LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
           LLF+P+GR   Y   +    +P+F KAIFKARFFGAFY+AVLG+RLRDFYVMLLTIPFI 
Sbjct: 72  LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGARLRDFYVMLLTIPFII 131

Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
           A+HE+SAY GHPSN L+EGLVILG    F    +LCAK GW
Sbjct: 132 AMHEISAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.332    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,109,875
Number of Sequences: 1026957
Number of extensions: 4064854
Number of successful extensions: 8955
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8949
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 324,149,939
effective HSP length: 111
effective length of query: 50
effective length of database: 210,157,712
effective search space: 10507885600
effective search space used: 10507885600
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 92 (40.0 bits)