BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644646|ref|NP_206815.1| hypothetical protein
[Helicobacter pylori 26695]
(350 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206815.1| (NC_000915) hypothetical protein [Helicoba... 700 0.0
ref|NP_222733.1| (NC_000921) putative [Helicobacter pylori ... 677 0.0
ref|NP_282761.1| (NC_002163) hypothetical protein Cj1633 [C... 271 1e-71
ref|NP_603460.1| (NC_003454) tRNA (5-methylaminomethyl-2-th... 216 2e-55
ref|NP_563126.1| (NC_003366) conserved hypothetical protein... 182 7e-45
ref|NP_213608.1| (NC_000918) putative protein [Aquifex aeol... 172 5e-42
ref|NP_014583.1| (NC_001147) arginosuccinate synthetase; Ar... 48 2e-04
ref|NP_602720.1| (NC_003454) tRNA (5-methylaminomethyl-2-th... 47 4e-04
ref|NP_251316.1| (NC_002516) tRNA methyltransferase [Pseudo... 46 6e-04
pir||T18663 hypothetical protein B0035.16 - Caenorhabditis ... 46 6e-04
ref|NP_629624.1| (NC_003888) tRNA (5-methylaminomethyl-2-th... 45 0.001
ref|NP_302176.1| (NC_002677) probable tRNA (5-methylaminome... 45 0.002
ref|NP_217540.1| (NC_000962) hypothetical protein Rv3024c [... 44 0.002
ref|NP_623996.1| (NC_003869) predicted ATPase of the PP-loo... 44 0.003
>ref|NP_206815.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64521 argininosuccinate synthase - Helicobacter pylori (strain 26695)
gb|AAD07083.1| (AE000523) H. pylori predicted coding region HP0013 [Helicobacter
pylori 26695]
Length = 350
Score = 700 bits (1806), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL
Sbjct: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
Query: 61 LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR 120
LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR
Sbjct: 61 LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR 120
Query: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM
Sbjct: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
Query: 181 EKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE 240
EKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
Sbjct: 181 EKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE 240
Query: 241 MVFEDSVIVKNGRYFVLPHNARLVVARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKN 300
MVFEDSVIVKNGRYFVLPHNARLVVARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKN
Sbjct: 241 MVFEDSVIVKNGRYFVLPHNARLVVARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKN 300
Query: 301 ASKEDKELAGRIALGYAKTLKNQAYLIQIGDEKRELYPLDKENAREYLFA 350
ASKEDKELAGRIALGYAKTLKNQAYLIQIGDEKRELYPLDKENAREYLFA
Sbjct: 301 ASKEDKELAGRIALGYAKTLKNQAYLIQIGDEKRELYPLDKENAREYLFA 350
>ref|NP_222733.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71984 hypothetical protein jhp0011 - Helicobacter pylori (strain J99)
gb|AAD05593.1| (AE001441) putative [Helicobacter pylori J99]
Length = 350
Score = 677 bits (1746), Expect = 0.0
Identities = 337/350 (96%), Positives = 346/350 (98%)
Query: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
MK+IKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL
Sbjct: 1 MKQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
Query: 61 LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR 120
LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLEL+ADFVLSGEVLGQR
Sbjct: 61 LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELDADFVLSGEVLGQR 120
Query: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
PKSQRKEALNQVRKLVREVGEEARFD +LDRTQA G+KPQFLDELLLRPMSAKLLEPTFM
Sbjct: 121 PKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLRPMSAKLLEPTFM 180
Query: 181 EKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE 240
EKKG+VDREKLLDVSGRGR+RQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE
Sbjct: 181 EKKGWVDREKLLDVSGRGRARQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYRE 240
Query: 241 MVFEDSVIVKNGRYFVLPHNARLVVARNEEENHKLDIQHPLMDKIELLNCKGPLSLVDKN 300
MVFED VIVKNGRYFVLPHNARLVVARNEEENHKLDI+HPLMDKIELL CKGPLSLVDKN
Sbjct: 241 MVFEDGVIVKNGRYFVLPHNARLVVARNEEENHKLDIEHPLMDKIELLGCKGPLSLVDKN 300
Query: 301 ASKEDKELAGRIALGYAKTLKNQAYLIQIGDEKRELYPLDKENAREYLFA 350
AS+EDKELAGRIALGYAKTLKNQAYLIQIG+EKRELYPLDKENAREYLFA
Sbjct: 301 ASQEDKELAGRIALGYAKTLKNQAYLIQIGNEKRELYPLDKENAREYLFA 350
>ref|NP_282761.1| (NC_002163) hypothetical protein Cj1633 [Campylobacter jejuni]
pir||G81259 hypothetical protein Cj1633 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73621.1| (AL139079) hypothetical protein Cj1633 [Campylobacter jejuni]
Length = 327
Score = 271 bits (692), Expect = 1e-71
Identities = 152/333 (45%), Positives = 210/333 (62%), Gaps = 34/333 (10%)
Query: 4 IKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVC 63
+KALALFSGGLDS+L+MKL+ QGIEV AL+ NIGFG DK E + A +GA +
Sbjct: 1 MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSEIMKKRAAMVGADFEMI 60
Query: 64 DIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQRPKS 123
D+R + +VLF P+YGYGK+FNPCIDCHA MF+ A + E NA F+++GEVLGQRP S
Sbjct: 61 DVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKEENASFIITGEVLGQRPMS 120
Query: 124 QRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFMEKK 183
QR +A+ +V+KL LD ++L+LRPM AK L T E++
Sbjct: 121 QRSDAMAKVKKL------------ALDE-----------EDLILRPMCAKNLPLTKPERE 157
Query: 184 GFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEY-REMV 242
G+VDREKL + GR R RQL++ +GL+ +E PGGGCLLT + KI++ E+ ++M
Sbjct: 158 GWVDREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQ 217
Query: 243 FEDSVIVKNGRYFVLPHNARLVVARNEEENHKL-DIQHPLMDKIELLNCKGPLSLVDKNA 301
D+ ++K GR+ LP+ A++++ RNE EN L ++ P + IE+ + G SLVD+
Sbjct: 218 VNDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEKI 277
Query: 302 SKEDKELAGRIALGYAK---------TLKNQAY 325
S++D ELA +IAL Y K KNQAY
Sbjct: 278 SEKDLELALKIALTYTKHEVGKSYELKFKNQAY 310
>ref|NP_603460.1| (NC_003454) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94759.1| (AE010567) putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase; fibronectin/fibrinogen-binding
protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 333
Score = 216 bits (551), Expect = 2e-55
Identities = 136/352 (38%), Positives = 202/352 (56%), Gaps = 33/352 (9%)
Query: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
M+KIKALALFSGGLDS L++K++ +QGIEV AL+F F G K+++ E+ Q+G +L
Sbjct: 1 MEKIKALALFSGGLDSALAIKVVQEQGIEVIALNFVSHFFGGKNEKA--ESMAKQLGIRL 58
Query: 61 LVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQR 120
D +++ V+ P YG GK NPCIDCH+ MF+ A + E A FV+SGEVLGQR
Sbjct: 59 EYIDFKKRHIL-VVEDPVYGRGKNMNPCIDCHSLMFKIAGELLEEYGASFVISGEVLGQR 117
Query: 121 PKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFM 180
P SQ +AL +V+KL +++L+LRP+SAKLL P+
Sbjct: 118 PMSQNSQALEKVKKL------------------------SGMEDLVLRPLSAKLLPPSKA 153
Query: 181 EKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKE--- 237
E +G+VDR+KLLD++GR R RQ+++++ YGL Y PGGGCLLTD S+++K L++
Sbjct: 154 EIEGWVDRKKLLDINGRSRQRQMELMEFYGLVEYPSPGGGCLLTDPGYSSRLKVLEDDGL 213
Query: 238 YREMVFEDSVIVKNGRYFVLPHNARLVVARNEEENHKLD---IQHPLMDKIELLNCKGPL 294
++ + ++K R+F L V RN+E N K+D + L I+ GP
Sbjct: 214 LKDEHYWLFKLIKEARFFRFSQARYLFVGRNKESNDKIDEFRKEKNLDFYIQSSEVPGPH 273
Query: 295 SLVDKNASKEDKELAGRIALGYAKTLKNQAYLIQIGDEKRELYPLDKENARE 346
+ + N + E+ E A ++ Y+K N+ ++ E+ LD E E
Sbjct: 274 IIANTNLTDEEIEFAKKLFSRYSKVKGNEKVILNNSGNLEEVDVLDLEKLDE 325
>ref|NP_563126.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81916.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 326
Score = 182 bits (461), Expect = 7e-45
Identities = 124/353 (35%), Positives = 191/353 (53%), Gaps = 41/353 (11%)
Query: 5 KALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCD 64
+ALA+ SGGLDS+L+ KL+ DQGIEV + F F ++ + + QI L V D
Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEENAKRMCK----QIDMPLEVVD 58
Query: 65 IREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELNADFVLSGEVLGQRPKSQ 124
E+ F +++ PK+G GK NPCIDCHA M R + + + +ADF+++GEVL QRP SQ
Sbjct: 59 FSEEHF-EMVKDPKHGRGKNMNPCIDCHAMMMRYSGELLKKFDADFIITGEVLNQRPMSQ 117
Query: 125 RKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLLRPMSAKLLEPTFMEKKG 184
++ALN V+K E+ F E +LRP+ A LEPT ME G
Sbjct: 118 NRQALNTVKK-------ESGFS-----------------EKILRPLCALNLEPTEMELNG 153
Query: 185 FVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQVSNKIKNLKEYREMVFE 244
VDREKLL +SGR R Q+++ + + + Y P GGC LT+ + ++ +L + +E V +
Sbjct: 154 LVDREKLLKISGRSRKTQMELAEKWNIVDYPSPAGGCKLTEPGYAIRLSDLLDNQETVAK 213
Query: 245 DSV-IVKNGRYFVLPHNARLVVARNEEENHKLDIQHPLMDKIELL--NCKGPLSLVDKNA 301
D + ++K GR+ + +++VARN EE ++ ++ D I + N G ++
Sbjct: 214 DEIEVLKYGRHMRISPKNKVIVARNGEEWKEI-VKFKREDDILVTSKNSTGAPVILRGEF 272
Query: 302 SKEDKELAGRIALGYAKTLKNQAYLIQIGDEKR------ELYPLDKENAREYL 348
++ED E A RI Y K + A ++I EK + P E ++Y+
Sbjct: 273 NQEDLETAARICGRYCKEKDSDA--VEINYEKNGEINTITITPFKDEELKKYM 323
>ref|NP_213608.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||C70377 hypothetical protein aq_898 - Aquifex aeolicus
gb|AAC07016.1| (AE000713) putative protein [Aquifex aeolicus]
Length = 251
Score = 172 bits (436), Expect = 5e-42
Identities = 105/246 (42%), Positives = 139/246 (55%), Gaps = 38/246 (15%)
Query: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGF---------GGNKDKREYFEN 51
M K KALAL SGGLDS L++KL+ +QGIEV A HF GF G K+ + N
Sbjct: 1 MGKRKALALLSGGLDSSLAVKLVQEQGIEVKAFHFYTGFCITEFKRRLGQTKEDGSPYVN 60
Query: 52 ----ATAQIGAKLLVCDIREQFFNDVLFKPKYGYGKYFNPCIDCHANMFRNAFYKMLELN 107
A AQ+G + + DI E+++ DV+ PKYGYGK NPC+DC M + A M +
Sbjct: 61 PAIKAAAQLGVPIEIVDISEEYY-DVVINPKYGYGKNVNPCVDCRIMMLKKAKEIMEKEG 119
Query: 108 ADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPVLDRTQAGGKKPQFLDELLL 167
DF+++GEVL QRP SQ E L + K +AG L+ L+L
Sbjct: 120 YDFIVTGEVLYQRPMSQTPERLKLIEK------------------EAG------LEGLIL 155
Query: 168 RPMSAKLLEPTFMEKKGFVDREKLLDVSGRGRSRQLQMIKDYGLKYYEKPGGGCLLTDIQ 227
RP+SAK+L PT EK+G+VDR KLL + GR R Q+++ K YGL Y + GG C LTD
Sbjct: 156 RPLSAKVLPPTIPEKEGWVDRNKLLGIKGRSRKVQIELAKKYGLDYEQPAGGCCYLTDET 215
Query: 228 VSNKIK 233
+ + K
Sbjct: 216 YAARFK 221
>ref|NP_014583.1| (NC_001147) arginosuccinate synthetase; Arg1p [Saccharomyces
cerevisiae]
sp|P22768|ASSY_YEAST ARGININOSUCCINATE SYNTHASE (CITRULLINE--ASPARTATE LIGASE)
pir||AJBYRS argininosuccinate synthase (EC 6.3.4.5) - yeast (Saccharomyces
cerevisiae)
emb|CAA62528.1| (X91067) argininosuccinate synthase [Saccharomyces cerevisiae]
emb|CAA99067.1| (Z74800) ORF YOL058w [Saccharomyces cerevisiae]
Length = 420
Score = 47.8 bits (112), Expect = 2e-04
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1 MKKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKL 60
M K K +SGGLD+ + + L+DQG EV A N+ G ++ + + +IGA
Sbjct: 1 MSKGKVCLAYSGGLDTSVILAWLLDQGYEVVAFMANV---GQEEDFDAAKEKALKIGACK 57
Query: 61 LVC-DIREQFFNDVLF 75
VC D RE F D+LF
Sbjct: 58 FVCVDCREDFVKDILF 73
>ref|NP_602720.1| (NC_003454) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94019.1| (AE010494) tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 343
Score = 46.6 bits (109), Expect = 4e-04
Identities = 37/113 (32%), Positives = 55/113 (47%), Gaps = 3/113 (2%)
Query: 5 KALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCD 64
K + SGG+DS +S LL +QG EV + N N E + ++G V +
Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGITLNQHLEENSKDIEDTKKVCDKLGIIHEVVN 62
Query: 65 IREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNADFVLSG 114
IR+ F N V+ F Y GK +PCI C + F+ F + NA++V +G
Sbjct: 63 IRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEYVATG 115
>ref|NP_251316.1| (NC_002516) tRNA methyltransferase [Pseudomonas aeruginosa]
sp|Q9I0L2|TRMU_PSEAE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||C83317 tRNA methyltransferase PA2626 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06014.1|AE004691_5 (AE004691) tRNA methyltransferase [Pseudomonas aeruginosa]
Length = 375
Score = 46.2 bits (108), Expect = 6e-04
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATA------- 54
++ + + SGG+DS +S LL+ QG +V L F N D+ + E TA
Sbjct: 9 RRERVIVGMSGGVDSSVSALLLLQQGYQVEGL-----FMKNWDEDDGTEYCTAREDLADA 63
Query: 55 -----QIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANMFRNAFYK-MLEL 106
+IG KL + +++++V F +Y G+ NP I C+ + AF L L
Sbjct: 64 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123
Query: 107 NADFVLSGEVLGQRPKSQRKEAL 129
AD + +G + +R + R E L
Sbjct: 124 GADLIATGHYVRRRDRDGRTELL 146
>pir||T18663 hypothetical protein B0035.16 - Caenorhabditis elegans
Length = 369
Score = 46.2 bits (108), Expect = 6e-04
Identities = 33/111 (29%), Positives = 57/111 (50%), Gaps = 8/111 (7%)
Query: 11 SGGLDSLLSMKLLIDQGIEVTALHFNIGFG---GNKDKREYFENATAQIGAKLLVCDIRE 67
SGG+DS +S LL +G +V LH G +KD+ + N ++ + +
Sbjct: 9 SGGVDSAVSAFLLKKRGFDVIGLHMEEGTSHCPRSKDESD-ARNVCDRLNIPFHTVNFVK 67
Query: 68 QFFNDVLFK--PKYGYGKYFNPCIDCHANMFRNAFYKML--ELNADFVLSG 114
+++NDV K Y G+ P IDC+ ++ + F+K+ + NADF+ +G
Sbjct: 68 EYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADFIATG 118
>ref|NP_629624.1| (NC_003888) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptomyces coelicolor A3(2)]
sp|O86583|TRMU_STRCO Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||T34768 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase -
Streptomyces coelicolor
emb|CAA20191.1| (AL031184) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptomyces coelicolor A3(2)]
Length = 376
Score = 45.1 bits (105), Expect = 0.001
Identities = 38/128 (29%), Positives = 59/128 (45%), Gaps = 16/128 (12%)
Query: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALH---------FNIGFGG---NKDKREYF 49
+ ++ LA SGG+DS ++ + G +VT +H F G G +D R+
Sbjct: 9 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALSANPQSFRTGARGCCTIEDSRD-A 67
Query: 50 ENATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLEL 106
A IG V D+ ++F DV+ F +Y G+ NPC+ C+ + F K L L
Sbjct: 68 RRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 127
Query: 107 NADFVLSG 114
D V +G
Sbjct: 128 GFDAVCTG 135
>ref|NP_302176.1| (NC_002677) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium leprae]
sp|O33099|TRMU_MYCLE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||T45400 hypothetical protein MLCB637.07 [imported] - Mycobacterium leprae
emb|CAB16422.1| (Z99263) hypothetical protein MLCB637.07 [Mycobacterium leprae]
emb|CAC30660.1| (AL583923) probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium leprae]
Length = 358
Score = 44.7 bits (104), Expect = 0.002
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 4 IKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI---------GFGGNKDKREYFE--NA 52
+K LA SGG+DS ++ ++D G +V +H + G G K + +
Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSTVSGTLRTGSRGCCSKEDVSDARRV 60
Query: 53 TAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNAD 109
+G V D E+F DV+ F Y G+ NPC+ C+ + F + L L D
Sbjct: 61 ADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLGFD 120
Query: 110 FVLSG 114
V +G
Sbjct: 121 TVATG 125
>ref|NP_217540.1| (NC_000962) hypothetical protein Rv3024c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337624.1| (NC_002755) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium tuberculosis CDC1551]
sp|O53271|TRMU_MYCTU Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
pir||C70858 hypothetical protein Rv3024c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA16109.1| (AL021287) hypothetical protein Rv3024c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47438.1| (AE007129) tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycobacterium tuberculosis CDC1551]
Length = 367
Score = 44.3 bits (103), Expect = 0.002
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 4 IKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI---------GFGG--NKDKREYFENA 52
+K LA SGG+DS ++ ++D G EV +H + G G +K+
Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALSTAPGTLRTGSRGCCSKEDAADARRV 60
Query: 53 TAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNAD 109
+G V D E+F DV+ F Y G+ NPC+ C+ + F + + L D
Sbjct: 61 ADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFD 120
Query: 110 FVLSG 114
V +G
Sbjct: 121 TVATG 125
>ref|NP_623996.1| (NC_003869) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
gb|AAM25600.1| (AE013188) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
Length = 300
Score = 43.9 bits (102), Expect = 0.003
Identities = 24/73 (32%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Query: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDK-REYFENATAQIGAKL 60
K K L + SGG DS+ +L+ +G V A++ N+G G ++ +E EN + L
Sbjct: 46 KDDKVLVVVSGGKDSMALWDVLVKEGYNVVAMYINLGIGEYSNRSQEVVENFAKKNNLPL 105
Query: 61 LVCDIREQFFNDV 73
+V +I+E+F D+
Sbjct: 106 IVKNIKEEFGLDI 118
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.140 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,136,892
Number of Sequences: 1026957
Number of extensions: 9380318
Number of successful extensions: 21140
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 21117
Number of HSP's gapped (non-prelim): 16
length of query: 350
length of database: 324,149,939
effective HSP length: 122
effective length of query: 228
effective length of database: 198,861,185
effective search space: 45340350180
effective search space used: 45340350180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)