BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645934|ref|NP_208113.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(377 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208113.1| (NC_000915) conserved hypothetical ATP-bin... 769 0.0
ref|NP_223959.1| (NC_000921) putative [Helicobacter pylori ... 710 0.0
ref|NP_282664.1| (NC_002163) putative helix-turn-helix cont... 80 4e-14
ref|NP_127122.1| (NC_000868) hypothetical protein [Pyrococc... 52 1e-05
>ref|NP_208113.1| (NC_000915) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
pir||A64685 conserved hypothetical ATP-binding protein HP1321 - Helicobacter
pylori (strain 26695)
gb|AAD08366.1| (AE000634) conserved hypothetical ATP-binding protein [Helicobacter
pylori 26695]
Length = 377
Score = 769 bits (1987), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MRYDYLNPISFERKFMPLSCLHPFGPFETPKEPVLNNPLLKAPSSDKICLLGPMKSGKTT 60
MRYDYLNPISFERKFMPLSCLHPFGPFETPKEPVLNNPLLKAPSSDKICLLGPMKSGKTT
Sbjct: 1 MRYDYLNPISFERKFMPLSCLHPFGPFETPKEPVLNNPLLKAPSSDKICLLGPMKSGKTT 60
Query: 61 FALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLILDRIDRLDFSLPKLPK 120
FALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLILDRIDRLDFSLPKLPK
Sbjct: 61 FALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLILDRIDRLDFSLPKLPK 120
Query: 121 IVLIPNCLSPITAPNFSLCYALGLNFKEYTSFFKPNTPKNTLFNRFLRDGNALDSLFTEN 180
IVLIPNCLSPITAPNFSLCYALGLNFKEYTSFFKPNTPKNTLFNRFLRDGNALDSLFTEN
Sbjct: 121 IVLIPNCLSPITAPNFSLCYALGLNFKEYTSFFKPNTPKNTLFNRFLRDGNALDSLFTEN 180
Query: 181 EQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA 240
EQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA
Sbjct: 181 EQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA 240
Query: 241 LEKQRILFLVPNFENNKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPKYELYS 300
LEKQRILFLVPNFENNKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPKYELYS
Sbjct: 241 LEKQRILFLVPNFENNKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPKYELYS 300
Query: 301 HDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPISATNTPY 360
HDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPISATNTPY
Sbjct: 301 HDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPISATNTPY 360
Query: 361 KHLNFIDFSLDIQSILV 377
KHLNFIDFSLDIQSILV
Sbjct: 361 KHLNFIDFSLDIQSILV 377
>ref|NP_223959.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71830 hypothetical protein jhp1241 - Helicobacter pylori (strain J99)
gb|AAD06826.1| (AE001548) putative [Helicobacter pylori J99]
Length = 376
Score = 710 bits (1833), Expect = 0.0
Identities = 353/377 (93%), Positives = 358/377 (94%), Gaps = 1/377 (0%)
Query: 1 MRYDYLNPISFERKFMPLSCLHPFGPFETPKEPVLNNPLLKAPSSDKICLLGPMKSGKTT 60
MRYD LNPI F RKFMPLSCLHPFGPFETPKEP LNNPLLKA SSDKICLLGPMKSGKTT
Sbjct: 1 MRYDCLNPIPFIRKFMPLSCLHPFGPFETPKEPALNNPLLKAHSSDKICLLGPMKSGKTT 60
Query: 61 FALKLAKVFKNPVYINYNDMRLNQNILSSWLLKWHLEKKMDLLILDRIDRLDFSLPKLPK 120
FALKLAK FKNPVYIN NDMRLNQNILSSWLLKWHLEKKMDLLILDRI+RLDFSLPKLPK
Sbjct: 61 FALKLAKGFKNPVYINCNDMRLNQNILSSWLLKWHLEKKMDLLILDRIERLDFSLPKLPK 120
Query: 121 IVLIPNCLSPITAPNFSLCYALGLNFKEYTSFFKPNTPKNTLFNRFLRDGNALDSLFTEN 180
IVLIPN LS ITAPNFSLCYALGLNFKEY SFFKPNTPKNTLFNRFLRDGNALDSLFTEN
Sbjct: 121 IVLIPNYLSHITAPNFSLCYALGLNFKEYISFFKPNTPKNTLFNRFLRDGNALDSLFTEN 180
Query: 181 EQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA 240
EQEKILKKQENIQL FQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA
Sbjct: 181 EQEKILKKQENIQLAFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA 240
Query: 241 LEKQRILFLVPNFENNKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPKYELYS 300
LEKQRI+FL PNFEN+KTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFP YELY+
Sbjct: 241 LEKQRIIFLAPNFENHKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNYELYA 300
Query: 301 HDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPISATNTPY 360
HDNGIFILR N T+KLALIAHAFPTPHFLEKQLLWCHKHGFL I VVSINAPISA N PY
Sbjct: 301 HDNGIFILR-NPTSKLALIAHAFPTPHFLEKQLLWCHKHGFLKIAVVSINAPISANNPPY 359
Query: 361 KHLNFIDFSLDIQSILV 377
KHLNFIDFSLDIQSILV
Sbjct: 360 KHLNFIDFSLDIQSILV 376
>ref|NP_282664.1| (NC_002163) putative helix-turn-helix containsing protein
[Campylobacter jejuni]
pir||C81300 probable helix-turn-helix containsing protein Cj1533c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73949.1| (AL139078) putative helix-turn-helix containsing protein
[Campylobacter jejuni]
Length = 345
Score = 80.1 bits (196), Expect = 4e-14
Identities = 70/257 (27%), Positives = 116/257 (44%), Gaps = 27/257 (10%)
Query: 44 SSDKICLLGPMKSGKTTFALKLAKVFKNP--VYINYNDMRLNQNILSSWLLKWHLEKKMD 101
S I + GP GK T FK ++++ D R + L L L + +
Sbjct: 25 SKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLER--LADFLNENLQ 82
Query: 102 LLILDRIDRLDFSLPKLPKI---VLIPNCLSPITAPNFSLCYALGLNFKEYTSFFKPNTP 158
+ IL + LDF +P L KI +++ + + F +F+E+ S K N P
Sbjct: 83 IKILC-LYNLDF-IPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLP 140
Query: 159 KNTLFNRFLRDGNALDSLFTENEQEKILKKQENIQLIFQAYAPLMAKICSYQS----KFV 214
N L FL+ G + K E L+ Q++ L +I Y + + +
Sbjct: 141 INNLVGLFLQSGRS--------------KFGEKNILLRQSFTLLELEILKYLALNLGQQI 186
Query: 215 SAFYLYTQLKKELKTSKDTLYKLLHALEKQRILFLVPNFENNKTKLYLCDFALPYSLTPS 274
S ++ +LKK LKTSKD++Y+ + LE +++ + + E K+Y DF L +L S
Sbjct: 187 SISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCIS 246
Query: 275 PSLLNVFENMVFLELYK 291
++FEN+V EL+K
Sbjct: 247 KDFSHLFENLVLSELFK 263
>ref|NP_127122.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75057 hypothetical protein PAB1420 - Pyrococcus abyssi (strain Orsay)
emb|CAB50352.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 442
Score = 52.0 bits (123), Expect = 1e-05
Identities = 52/186 (27%), Positives = 83/186 (43%), Gaps = 33/186 (17%)
Query: 144 LNFKEYTSFFKPNTPKNTLFNRFLRDGNALD-----------SLFTENEQEKILKKQENI 192
L+F+E+ F N + + + R + LD +L ++ +E IL++ N+
Sbjct: 172 LSFREFLRFKGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALADKSVKELILREYLNV 231
Query: 193 QL------------IFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHA 240
+ I+ L I SY +K+VS LY K LK +K T+ L+
Sbjct: 232 LIKRDILERHRIKNIYLLNELLYFSIRSY-AKYVSVDSLYRLFKGRLKVTKRTIANYLNY 290
Query: 241 LEKQRILFLVPNFE-------NNKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQF 293
LE+ +FL+ +E + KLYL D +S+ L EN+VFLEL ++
Sbjct: 291 LEESFAIFLLRRYEPSIKGRITSPRKLYLIDTG--FSMFGEKDLSRDVENVVFLELVRRN 348
Query: 294 PKYELY 299
P ELY
Sbjct: 349 PWAELY 354
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,659,001
Number of Sequences: 1026957
Number of extensions: 11439053
Number of successful extensions: 40772
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40765
Number of HSP's gapped (non-prelim): 5
length of query: 377
length of database: 324,149,939
effective HSP length: 123
effective length of query: 254
effective length of database: 197,834,228
effective search space: 50249893912
effective search space used: 50249893912
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 98 (42.4 bits)