BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645935|ref|NP_208114.1| hypothetical protein
[Helicobacter pylori 26695]
(201 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208114.1| (NC_000915) hypothetical protein [Helicoba... 400 e-111
ref|NP_223960.1| (NC_000921) putative [Helicobacter pylori ... 351 3e-96
>ref|NP_208114.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64685 hypothetical protein HP1322 - Helicobacter pylori (strain 26695)
gb|AAD08374.1| (AE000634) H. pylori predicted coding region HP1322 [Helicobacter
pylori 26695]
Length = 201
Score = 400 bits (1028), Expect = e-111
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MIFYRKEATMNALKKLSFCALLSLGLFAQTAHAKHLKGTINYPDWLEINFFDEKNPPNQY 60
MIFYRKEATMNALKKLSFCALLSLGLFAQTAHAKHLKGTINYPDWLEINFFDEKNPPNQY
Sbjct: 1 MIFYRKEATMNALKKLSFCALLSLGLFAQTAHAKHLKGTINYPDWLEINFFDEKNPPNQY 60
Query: 61 VGSASISGKRNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVK 120
VGSASISGKRNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVK
Sbjct: 61 VGSASISGKRNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVK 120
Query: 121 VLQVKNNVISHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRI 180
VLQVKNNVISHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRI
Sbjct: 121 VLQVKNNVISHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRI 180
Query: 181 DLSSASATHLSALLNKALFHL 201
DLSSASATHLSALLNKALFHL
Sbjct: 181 DLSSASATHLSALLNKALFHL 201
>ref|NP_223960.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71830 hypothetical protein jhp1242 - Helicobacter pylori (strain J99)
gb|AAD06827.1| (AE001548) putative [Helicobacter pylori J99]
Length = 192
Score = 351 bits (900), Expect = 3e-96
Identities = 175/192 (91%), Positives = 185/192 (96%)
Query: 10 MNALKKLSFCALLSLGLFAQTAHAKHLKGTINYPDWLEINFFDEKNPPNQYVGSASISGK 69
MNALKKLSFCALLSLGLFAQT HA+HLK TINYPDWL+IN FD+KNPPNQYVGSASISGK
Sbjct: 1 MNALKKLSFCALLSLGLFAQTVHAQHLKDTINYPDWLKINLFDKKNPPNQYVGSASISGK 60
Query: 70 RNDFYANYIPYDDQLPPEQNAEKIALLRARINAYSTLESILLTKMHNRIVKVLQVKNNVI 129
RNDFY+NYIPYDD+LPPE+NAE+IALLRAR+NAYSTLES LLTKM NRIVK LQVKNNVI
Sbjct: 61 RNDFYSNYIPYDDKLPPEKNAEEIALLRARMNAYSTLESALLTKMCNRIVKALQVKNNVI 120
Query: 130 SHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRIDLSSASATH 189
SHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRIDLS ASAT+
Sbjct: 121 SHLFGLVDFLTSKSILAKRFVDTTNHRVYVMVQFPFIQPEDLIAYFKAKRIDLSLASATN 180
Query: 190 LSALLNKALFHL 201
LSA+LNKALFHL
Sbjct: 181 LSAILNKALFHL 192
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,600,948
Number of Sequences: 1026957
Number of extensions: 4489428
Number of successful extensions: 9576
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9574
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 324,149,939
effective HSP length: 115
effective length of query: 86
effective length of database: 206,049,884
effective search space: 17720290024
effective search space used: 17720290024
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 94 (40.8 bits)