BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645937|ref|NP_208116.1| hypothetical protein
[Helicobacter pylori 26695]
         (83 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208116.1|  (NC_000915) hypothetical protein [Helicoba...   171  2e-42
ref|NP_223962.1|  (NC_000921) putative [Helicobacter pylori ...   108  1e-23

>ref|NP_208116.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64685 hypothetical protein HP1324 - Helicobacter pylori (strain 26695)
 gb|AAD08375.1| (AE000634) H. pylori predicted coding region HP1324 [Helicobacter
          pylori 26695]
          Length = 83

 Score =  171 bits (432), Expect = 2e-42
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MNPEKATHCKEIRKILKEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKN 60
          MNPEKATHCKEIRKILKEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKN
Sbjct: 1  MNPEKATHCKEIRKILKEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKN 60

Query: 61 FEKELTEFIKRLRENRITHETCE 83
          FEKELTEFIKRLRENRITHETCE
Sbjct: 61 FEKELTEFIKRLRENRITHETCE 83



>ref|NP_223962.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71830 hypothetical protein jhp1244 - Helicobacter pylori (strain J99)
 gb|AAD06829.1| (AE001548) putative [Helicobacter pylori J99]
          Length = 64

 Score =  108 bits (271), Expect = 1e-23
 Identities = 53/64 (82%), Positives = 56/64 (86%)

Query: 20 LHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENRITH 79
          +HDNKDLNLYLESGSKHAKLT   +HL IPSSPSDRKSVKNFEKELTEFIK+LR NRITH
Sbjct: 1  MHDNKDLNLYLESGSKHAKLTGRVHHLTIPSSPSDRKSVKNFEKELTEFIKKLRGNRITH 60

Query: 80 ETCE 83
             E
Sbjct: 61 GAFE 64



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,785,988
Number of Sequences: 1026957
Number of extensions: 1948745
Number of successful extensions: 6736
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6734
Number of HSP's gapped (non-prelim): 2
length of query: 83
length of database: 324,149,939
effective HSP length: 59
effective length of query: 24
effective length of database: 263,559,476
effective search space: 6325427424
effective search space used: 6325427424
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)