BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645939|ref|NP_208118.1| hypothetical protein
[Helicobacter pylori 26695]
(125 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208118.1| (NC_000915) hypothetical protein [Helicoba... 246 4e-65
ref|NP_223964.1| (NC_000921) putative [Helicobacter pylori ... 240 2e-63
ref|NP_213771.1| (NC_000918) cation efflux system (czcB-lik... 51 3e-06
>ref|NP_208118.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64685 hypothetical protein HP1326 - Helicobacter pylori (strain 26695)
gb|AAD08376.1| (AE000634) H. pylori predicted coding region HP1326 [Helicobacter
pylori 26695]
Length = 125
Score = 246 bits (627), Expect = 4e-65
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MKKLAALFLVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEK 60
MKKLAALFLVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEK
Sbjct: 1 MKKLAALFLVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEK 60
Query: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAK 120
AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAK
Sbjct: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAK 120
Query: 121 TSLDL 125
TSLDL
Sbjct: 121 TSLDL 125
>ref|NP_223964.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71831 hypothetical protein jhp1246 - Helicobacter pylori (strain J99)
gb|AAD06819.1| (AE001548) putative [Helicobacter pylori J99]
Length = 125
Score = 240 bits (612), Expect = 2e-63
Identities = 121/125 (96%), Positives = 122/125 (96%)
Query: 1 MKKLAALFLVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEK 60
MKKLAALFLVS LGVM LNAWEQTLKANDLEVKIKSVGNPIKGDNTF+LSPTLKGKALEK
Sbjct: 1 MKKLAALFLVSALGVMSLNAWEQTLKANDLEVKIKSVGNPIKGDNTFVLSPTLKGKALEK 60
Query: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAK 120
AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYR K
Sbjct: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRTK 120
Query: 121 TSLDL 125
TSLDL
Sbjct: 121 TSLDL 125
>ref|NP_213771.1| (NC_000918) cation efflux system (czcB-like) [Aquifex aeolicus]
pir||D70397 cation efflux system (czcB-like) - Aquifex aeolicus
gb|AAC07176.1| (AE000725) cation efflux system (czcB-like) [Aquifex aeolicus]
Length = 444
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 19/91 (20%)
Query: 25 LKANDLEV-------KIKSVGNPIKGDNTFILSPTLKGKALEKAIVRVQFMMPEMPGMPA 77
LK ++EV KIKS GN I+ + + P K I F MP MPGM
Sbjct: 27 LKQKEVEVVIYSKDGKIKSGGNEIRVE----VKPP-------KEIKEFYFYMPPMPGMNE 75
Query: 78 MKEMAQVSEKN-GLYEAKTNLSMNGTWQVRV 107
M+++A++ +K G+YE N+SM+G W++R+
Sbjct: 76 MRDVAKLEKKGEGVYEGFVNISMDGPWEIRI 106
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,429,904
Number of Sequences: 1026957
Number of extensions: 2636017
Number of successful extensions: 5790
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5787
Number of HSP's gapped (non-prelim): 3
length of query: 125
length of database: 324,149,939
effective HSP length: 101
effective length of query: 24
effective length of database: 220,427,282
effective search space: 5290254768
effective search space used: 5290254768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)