BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645940|ref|NP_208119.1| hypothetical protein
[Helicobacter pylori 26695]
(412 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208119.1| (NC_000915) hypothetical protein [Helicoba... 786 0.0
ref|NP_223965.1| (NC_000921) putative [Helicobacter pylori ... 744 0.0
ref|NP_213772.1| (NC_000918) putative protein [Aquifex aeol... 60 5e-08
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 54 3e-06
ref|NP_228378.1| (NC_000853) hypothetical protein [Thermoto... 53 6e-06
ref|NP_010643.1| (NC_001136) may be involved in connecting ... 52 1e-05
ref|NP_110162.1| (NC_000912) coiled coil protein, putative ... 51 3e-05
gb|AAF72796.1|AF173004_1 (AF173004) paramyosin [Anisakis si... 50 6e-05
ref|NP_565741.1| (NM_128783) putative myosin heavy chain [A... 49 1e-04
gb|AAL09731.1| (AY057490) At2g32240/F22D22.1 [Arabidopsis t... 49 1e-04
ref|NP_126050.1| (NC_000868) chromosome segregation protein... 48 2e-04
pir||T28677 rhoptry protein - Plasmodium yoelii >gi|457146|... 48 2e-04
ref|NP_599220.1| (NM_134393) outer dense fiber ODF3 [Rattus... 48 2e-04
gb|AAC52049.1| (U29343) hyaluronan receptor [Homo sapiens] 48 2e-04
ref|XP_036988.5| (XM_036988) KIAA1000 protein [Homo sapiens] 47 3e-04
dbj|BAA76844.1| (AB023217) KIAA1000 protein [Homo sapiens] 47 3e-04
sp|P06198|MYSP_SCHMA Paramyosin >gi|161059|gb|AAA29915.1| (... 47 3e-04
ref|NP_267477.1| (NC_002662) ATP-dependent dsDNA exonucleas... 47 5e-04
ref|XP_168207.1| (XM_168207) hypothetical protein XP_168207... 46 7e-04
ref|NP_005742.3| (NM_005751) A kinase (PRKA) anchor protein... 46 7e-04
dbj|BAA92710.1| (AB032197) myosin heavy chain [Gallus gallus] 46 7e-04
sp|Q99996|AKA9_HUMAN A-kinase anchor protein 9 (Protein kin... 46 7e-04
emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [... 46 7e-04
gb|AAD22767.1|AF083037_1 (AF083037) A-kinase anchoring prot... 46 7e-04
ref|NP_578896.1| (NC_003413) smc-like [Pyrococcus furiosus ... 46 7e-04
dbj|BAA78718.1| (AB019691) Centrosome- and Golgi-localized ... 46 7e-04
ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P... 46 7e-04
pir||T00637 hypothetical protein H_GS541B18.1 - human (frag... 46 7e-04
gb|AAD39719.1|AF091711_1 (AF091711) splice variant AKAP350 ... 46 7e-04
dbj|BAA34523.1| (AB018346) KIAA0803 protein [Homo sapiens] 46 7e-04
gb|AAK18791.1|AF305599_1 (AF305599) LMP1 [Borrelia burgdorf... 46 0.001
ref|NP_473081.1| (NC_000910) hypothetical protein [Plasmodi... 46 0.001
sp|O33600|RA50_SULAC DNA double-strand break repair rad50 A... 45 0.001
pir||A41604 myosin heavy chain, smooth muscle, long splice ... 45 0.002
gb|AAK19244.1|AF312916_1 (AF312916) reticulocyte binding pr... 45 0.002
sp|P32985|BPS2_ACIAM Protein bps2 >gi|99246|pir||S22195 bps... 45 0.002
sp|P35748|MYHB_RABIT Myosin heavy chain, smooth muscle isof... 45 0.002
gb|AAM11006.1| (AY094653) AT11177p [Drosophila melanogaster] 45 0.002
gb|AAF55715.1| (AE003728) CG4755 gene product [Drosophila m... 45 0.002
gb|AAL93605.1| (AC116102) hypothetical protein [Dictyosteli... 45 0.002
gb|AAK19245.1|AF312917_1 (AF312917) reticulocyte binding pr... 45 0.002
ref|NP_472967.1| (NC_000910) hypothetical protein [Plasmodi... 45 0.002
gb|AAC14432.1| (AF059041) putative outer membrane pore prot... 45 0.002
dbj|BAA34954.1| (AB015484) myosin heavy chain [Dugesia japo... 44 0.003
pir||S03166 myosin heavy chain, gizzard smooth muscle [simi... 44 0.003
sp|Q90988|SCII_CHICK CHROMOSOME SCAFFOLD PROTEIN SCII >gi|1... 44 0.003
sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle 44 0.003
gb|AAK18803.1|AF305611_1 (AF305611) LMP1 [Borrelia burgdorf... 44 0.003
gb|AAB95253.1| (U91585) myosin heavy chain [Girardia tigrina] 44 0.003
ref|XP_147228.1| (XM_147228) myosin heavy chain 11, smooth ... 44 0.005
ref|NP_077971.1| (NC_002162) p115 protein [Ureaplasma ureal... 44 0.005
ref|NP_055450.1| (NM_014635) KIAA0336 gene product [Homo sa... 44 0.005
gb|AAH26142.1| (BC026142) Unknown (protein for MGC:13920) [... 44 0.005
pir||I51302 myosin heavy chain - chicken (fragment) >gi|945... 44 0.005
dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japo... 43 0.006
ref|NP_071582.1| (NM_022246) RAD50 homolog (S. cerevisiae) ... 43 0.006
pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni... 43 0.006
ref|NP_223270.1| (NC_000921) putative [Helicobacter pylori ... 43 0.008
ref|NP_207400.1| (NC_000915) hypothetical protein [Helicoba... 43 0.008
gb|AAK15626.1|AF323443_1 (AF323443) 235 kDa rhoptry protein... 43 0.008
ref|NP_186943.1| (NM_111163) unknown protein [Arabidopsis t... 43 0.008
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 43 0.008
ref|XP_109181.1| (XM_109181) RAD50 homolog (S. cerevisiae) ... 43 0.008
gb|AAK15625.1|AF323442_1 (AF323442) 235 kDa rhoptry protein... 43 0.008
ref|NP_282181.1| (NC_002163) putative outer membrane compon... 43 0.008
ref|NP_033038.1| (NM_009012) RAD50 homolog (S. cerevisiae) ... 43 0.008
ref|NP_326501.1| (NC_002771) conserved hypothetical protein... 43 0.008
ref|NP_195065.1| (NM_119493) putative protein [Arabidopsis ... 43 0.008
>ref|NP_208119.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64685 hypothetical protein HP1327 - Helicobacter pylori (strain 26695)
gb|AAD08377.1| (AE000634) H. pylori predicted coding region HP1327 [Helicobacter
pylori 26695]
Length = 412
Score = 786 bits (2030), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALS 60
MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALS
Sbjct: 1 MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALS 60
Query: 61 SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDL 120
SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDL
Sbjct: 61 SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDL 120
Query: 121 EKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLI 180
EKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLI
Sbjct: 121 EKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLI 180
Query: 181 AIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS 240
AIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS
Sbjct: 181 AIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS 240
Query: 241 ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI 300
ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI
Sbjct: 241 ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI 300
Query: 301 YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKI 360
YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKI
Sbjct: 301 YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKI 360
Query: 361 AQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE 412
AQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE
Sbjct: 361 AQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE 412
>ref|NP_223965.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71831 hypothetical protein jhp1247 - Helicobacter pylori (strain J99)
gb|AAD06820.1| (AE001548) putative [Helicobacter pylori J99]
Length = 412
Score = 744 bits (1922), Expect = 0.0
Identities = 386/412 (93%), Positives = 400/412 (96%)
Query: 1 MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALS 60
MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQ+FVAKYLSKNQKIQALQEQIDAL
Sbjct: 1 MLSFISAFDKRGVSIRLLTALLLLFSLGLAKDLEIQTFVAKYLSKNQKIQALQEQIDALD 60
Query: 61 SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDL 120
SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQS+MI+L
Sbjct: 61 SQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSKMINL 120
Query: 121 EKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLI 180
EKQKKILELKKTKQQL I+LMINGIENYKNQQEIELL TAIKNLENTLYQANHSSSP+LI
Sbjct: 121 EKQKKILELKKTKQQLVINLMINGIENYKNQQEIELLNTAIKNLENTLYQANHSSSPDLI 180
Query: 181 AIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS 240
AIAKLEILKS LEI+KN+LE ALS+SHYSMGEL FKENE+LSIAPKNFEFN EQELHNIS
Sbjct: 181 AIAKLEILKSLLEIEKNDLEVALSSSHYSMGELTFKENEILSIAPKNFEFNNEQELHNIS 240
Query: 241 ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI 300
ATNYDIAIARLDEEK+QKDITLAKKSFLED+NVTGVYYFRSKQYYNYDMFS+ALSIPLP+
Sbjct: 241 ATNYDIAIARLDEEKAQKDITLAKKSFLEDINVTGVYYFRSKQYYNYDMFSVALSIPLPL 300
Query: 301 YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKI 360
YGKQAKLVEQKKKESL FKSEVEN KNKT HLALKLLKKLETLQKNLESINKIIKQNEKI
Sbjct: 301 YGKQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEKI 360
Query: 361 AQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE 412
AQIYALDLK+NGDYNAYYNA NDKITIQITQLETLSALNS YLSLQNLKGLE
Sbjct: 361 AQIYALDLKTNGDYNAYYNALNDKITIQITQLETLSALNSAYLSLQNLKGLE 412
>ref|NP_213772.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||E70397 hypothetical protein aq_1133 - Aquifex aeolicus
gb|AAC07177.1| (AE000725) putative protein [Aquifex aeolicus]
Length = 392
Score = 60.1 bits (144), Expect = 5e-08
Identities = 86/395 (21%), Positives = 172/395 (42%), Gaps = 33/395 (8%)
Query: 21 LLLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNN 80
+ +L SL +++ + L N K+++ A + + + NP + + N
Sbjct: 5 IFVLISLNFVFSSQLEELINFALKNNTKLKSFVYLEKANTFRSLFMKSLPNPEIRFTFRN 64
Query: 81 ANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISL 140
+ + M ++ Q+ L K+ S++ ++ ++ + +++L ++
Sbjct: 65 FDTEVPMVREENPMSGYAITFMQRYTLPVKREKSSEIFKNRAKEVKVKREIYERELIKNV 124
Query: 141 MI---NGIENYKNQQEIELLKTAIKNLENTLYQ--ANHSSSPNLIAIAKLEILKSQLEIK 195
I + + Y+ ++ ++ +K + L L + A + + + I + K EI+K + E+K
Sbjct: 125 KILYYDFLYTYEKERILKEIKEDLYILLENLKEKYAQNKALLSDILMVKTEIIKVEEELK 184
Query: 196 KNN-LEEALSASHYSM--GELAFKENEL-LSIAPKNFEFNREQELHNISATNYDIAIARL 251
N L E + YS+ G+ + L L P+NF E E + + L
Sbjct: 185 NNEALREKIKGEIYSLIGGKFDLRPGRLSLFKFPQNFS---EDE---------SVYVRLL 232
Query: 252 DEEKS--QKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI-YGKQAKLV 308
EE + +K++ AK D+N+ Y R+ N D+FS+ + + LP+ Y K+ + +
Sbjct: 233 FEELNTLRKELERAKVEHYPDLNLLAEYVVRTG---NPDLFSLGIGVSLPVWYEKRERFL 289
Query: 309 EQKKKESLVFK-SEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQIYALD 367
+ KE + K E+ TKN L L + K L+++ + IK+ E+ +I AL
Sbjct: 290 VLEAKERIKAKMKELNFTKNFVKERFLGLKRSYNITLKALKTLEEEIKKKEQ--EIEALF 347
Query: 368 LK---SNGDYNAYYNAFNDKITIQITQLETLSALN 399
L D A+ D ++I + TL LN
Sbjct: 348 LAYGYEKVDVREIIRAYRDLWKLKIQRAFTLKKLN 382
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 53.9 bits (128), Expect = 3e-06
Identities = 93/403 (23%), Positives = 172/403 (42%), Gaps = 53/403 (13%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANV-SDFFRLDST 92
E + +YL +++ L+E +D L ++K+ ++ N I L +N N+ +D L+
Sbjct: 286 ETEKSYLEYLEIENRLKDLRENLDNLLEEQKLNIQYQNNIEKLELSNKNLKNDIINLEEN 345
Query: 93 LMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQ 152
+ +N S+K K+ +S++ +L+ +++ L+L K K+ +++ + +EN+K+++
Sbjct: 346 ISKN-----SEK-----KENLESEISNLKIKEEDLDL-KLKKYISLLDELEKLENFKDKK 394
Query: 153 EIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILK------SQLEIKKNNLEEALSAS 206
+ LK K E + + S +L +EI++ +LE + LEE
Sbjct: 395 LEDKLK---KTTEIDILKKELISKKDLFKTINIEIIEEKLSNFQELEKELKLLEEQKIIF 451
Query: 207 HYSMGELAFKENELL-SIAPKNFEFNREQELHNISATNY---DIAIARLDEEKSQKDITL 262
+ L EL I P F + Q L + A +Y I+I + D E +K+I
Sbjct: 452 EIEIKTLKKSSKELSDKICP--FLNEKCQNLEDKEAEDYFSSKISIKKEDLENLKKNIKE 509
Query: 263 AKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKK------ESL 316
+ +E V V+ + KQY+ + L I L K +E K + L
Sbjct: 510 KTQILVEKV----VFEDKKKQYFELEKSIKDLEISLKNEEINLKEIELDIKNLDIDIQKL 565
Query: 317 VFKSEVEN--------TKNKTHHLALKLLKKLETLQKNLESI----NKIIKQNEKI---- 360
+ E +N T+ + L L +K E L+ LE++ KI+K I
Sbjct: 566 IENQEFQNSQMLREKKTELEVELRNLNLDEKRENLKNILENLEIEKEKILKNQNSIKSNL 625
Query: 361 AQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYL 403
+I K D N + +I +L+ L + YL
Sbjct: 626 EEIDVFSKKIKEDINKNIESIKSEIKTFENKLDDLKNPYNEYL 668
>ref|NP_228378.1| (NC_000853) hypothetical protein [Thermotoga maritima]
pir||G72361 hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35653.1|AE001731_10 (AE001731) hypothetical protein [Thermotoga maritima]
Length = 554
Score = 53.1 bits (126), Expect = 6e-06
Identities = 63/245 (25%), Positives = 109/245 (43%), Gaps = 31/245 (12%)
Query: 178 NLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELH 237
+LI I + +LE K NNLE + + + + E ++L + K QE
Sbjct: 11 SLILIFLAACVSPELEEKLNNLENQIRQLNTQIDSI---EKKMLDLENKMKAQESSQE-- 65
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDM----FSIA 293
+ A D+ + D Q++ + +K S LE+ YY+ M A
Sbjct: 66 ELEALKRDVRYLKEDLSSLQEEFS-SKMSDLEN------------SYYSISMKLPAVEKA 112
Query: 294 LSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKI 353
SI I ++K+ E ++K S+V H+ L L +++ TL+KN+ +++I
Sbjct: 113 ASIFSEIEDMKSKISELERKVSIVSLGSSPEVSEDLKHILLDLEERVSTLEKNVSVVDRI 172
Query: 354 ---IKQNEKIAQIYALDLKSNGDYNA-YYNAFNDKITIQITQLE-TLSALNSTYLSL--- 405
++ EK+ AL + S G+ A N ND++ +I+ +E LS L + +L
Sbjct: 173 EERLESTEKLLSKVALRVLSQGETEAKVVNVSNDELESRISDIEKKLSYLETNQKALEQI 232
Query: 406 -QNLK 409
QNLK
Sbjct: 233 VQNLK 237
>ref|NP_010643.1| (NC_001136) may be involved in connecting nuclear microtubules to
the spindle pole body; Spc110p [Saccharomyces
cerevisiae]
sp|P32380|NUF1_YEAST NUF1 protein (Spindle poly body spacer protein SPC110)
pir||S26710 spindle pole body protein NUF1 - yeast (Saccharomyces cerevisiae)
emb|CAA77668.1| (Z11582) nuf1 [Saccharomyces cerevisiae]
emb|CAA51733.1| (X73297) SPC110/NUF1 [Saccharomyces cerevisiae]
gb|AAB64791.1| (U28372) Nuf1p: Probable essential component of the nucleoskeleton
(Swiss Prot. accession number P32380) [Saccharomyces
cerevisiae]
Length = 944
Score = 52.0 bits (123), Expect = 1e-05
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 32/276 (11%)
Query: 106 DLNGKKLTQSQMIDLEKQKKILELKKTKQQL---AISLMINGIENYKNQQEIELLKTAIK 162
+LN K+ +M DL+ ++K E K+ K +L NG ++ + E+++LK I
Sbjct: 305 ELNELKIKSDEM-DLQLKQKQNESKRLKDELNELETKFSENGSQSSAKENELKMLKNKIA 363
Query: 163 NLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLS 222
LE + N +A L +QLE K N + L + + + K + +
Sbjct: 364 ELEEEISTKNSQLIAKEGKLASLMAQLTQLESKLNQRDSQLGSREEELKKTNDKLQKDIR 423
Query: 223 IAPKNFEFNREQEL---HNISATNYDIAIARL--DEEKSQKDITLAKKSFL-----EDVN 272
IA + E+ + + D+ + + E K+ D L K L D+
Sbjct: 424 IAREETVSKDERIIDLQKKVKQLENDLFVIKKTHSESKTITDNELESKDKLIKILENDLK 483
Query: 273 VTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQK----------KKESLVFKSEV 322
V Y + ++ F+ +S ++KL ++K E+ K+++
Sbjct: 484 VAQEKYSKMEKELKEREFNYKIS--------ESKLEDEKTTLNEKISNLAAENSQLKNKI 535
Query: 323 ENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNE 358
E+ THH+ K+LE+L+K++E + K +E
Sbjct: 536 EDNSTATHHMKENYEKQLESLRKDIEEYKESAKDSE 571
>ref|NP_110162.1| (NC_000912) coiled coil protein, putative structural protein
involved in cytosceleton [Mycoplasma pneumoniae]
sp|P75310|Y328_MYCPN Hypothetical protein MG328 homolog (P01_orf1033)
pir||S73693 MG328 homolog P01_orf1033 - Mycoplasma pneumoniae (strain ATCC
29342)
gb|AAB96015.1| (AE000035) coiled coil protein, putative structural protein
involved in cytosceleton [Mycoplasma pneumoniae]
Length = 1033
Score = 50.8 bits (120), Expect = 3e-05
Identities = 95/408 (23%), Positives = 177/408 (43%), Gaps = 79/408 (19%)
Query: 30 AKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPI---LYLGYNNANVSDF 86
A ++++ +AK L +Q LQE+I+ L +Q +++ N + L+ NN+ +
Sbjct: 372 ALQIQLEEQLAKPLQYDQS-PVLQERIELLQNQNTNLTQELNELQQKLFKSQNNSLL--L 428
Query: 87 FRLDS---TLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILEL-------KKTKQQL 136
RL+ TL Q++ L + LN Q + + +K L++ KK ++QL
Sbjct: 429 ARLEEENRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQL 488
Query: 137 AI--SLM--INGIEN------YKNQQ------EIELLKTAIKNLENTLYQANHSSSPNLI 180
A+ SL IN +E NQ+ E LKT IK L T ++ NL+
Sbjct: 489 ALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLL 548
Query: 181 AIAKLEILKSQLEIKKNNLEEALSASHY--SMGELAFKENELLSIAPKNFEFNREQELHN 238
+L S ++K+ E+ L+ H+ + +L + NE L +EL
Sbjct: 549 KQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQ-RHNEAL-----------VKELDQ 596
Query: 239 ISATNYDIAIARLDEEKSQKDITLAKKSFL--------EDVNVTG-----------VYYF 279
+ ATN+++ +A E+ QK + K S L E+V G V F
Sbjct: 597 VKATNFELGLAAQGFEQ-QKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEF 655
Query: 280 RSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLL-- 337
K+ +D ++ L+ + +EQ + + + + ++ K + L KL+
Sbjct: 656 THKEKTAFDSKTLTLT---------KQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMAS 706
Query: 338 -KKLETLQKNLESINKIIKQNEKIAQIY-ALDLKSNGDYNAYYNAFND 383
+L LQ++ E++ ++ Q+E + + Y L ++N ++ A N+
Sbjct: 707 ETQLNHLQQSDENLTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNE 754
>gb|AAF72796.1|AF173004_1 (AF173004) paramyosin [Anisakis simplex]
Length = 869
Score = 49.7 bits (117), Expect = 6e-05
Identities = 63/275 (22%), Positives = 124/275 (44%), Gaps = 28/275 (10%)
Query: 110 KKLTQSQMIDLEKQ-----KKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNL 164
KK+ Q Q + E+Q +K+ +L+K K +L + + ++ K Q I +L+ A + L
Sbjct: 317 KKMMQKQA-EYEEQIEIMLQKVSQLEKAKARLQSEVEVLIVDLEKAQNTIAILERAKEQL 375
Query: 165 ENTLYQANHSSSPNLI-----------AIAKLEILKSQLEIKKNNLEEALSASHYSMGEL 213
E + + L+ A+A+L+ +K QL K +EAL+ + + +
Sbjct: 376 EKQVLEMKSRIDELLVELEAAQREARAALAELQKMK-QLYEKAVEQKEALARENKKLQDD 434
Query: 214 AFKENELLSIAPKNFEFNREQELHN--ISATNYDIAIARLDEEKSQKDITLAKKSFLEDV 271
+ NE L+ A + E +L N ++ D+ +A + E +++D + L ++
Sbjct: 435 LHEANEALADANRKLH---ELDLENARLAGEIRDLQVALKESEAARRDAEARAQRALAEL 491
Query: 272 NVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHH 331
+ R Q +M ++ S+ I A L + + + K+E+ + K
Sbjct: 492 QQVRIEMERRLQEKEEEMEALRKSMQFEIDRLTAALADAEAR----MKAEIARLRKKYQA 547
Query: 332 LALKLLKKLETLQK-NLESINKIIKQNEKIAQIYA 365
+L ++ L + NLE+ I KQ+E+I Q+ A
Sbjct: 548 EIAELEMTVDNLNRANLEAQKTIKKQSEQIIQLQA 582
>ref|NP_565741.1| (NM_128783) putative myosin heavy chain [Arabidopsis thaliana]
gb|AAM15156.1| (AC006223) putative myosin heavy chain [Arabidopsis thaliana]
Length = 775
Score = 48.9 bits (115), Expect = 1e-04
Identities = 89/406 (21%), Positives = 170/406 (40%), Gaps = 52/406 (12%)
Query: 26 SLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSD 85
SL + + +Q + ++ S++ + +L E++ L + + ++ + ++++ +
Sbjct: 241 SLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEGK---IKSYEEQLAEASGKSSSLKE 297
Query: 86 FFRLDSTLMQNMSLGLSQKVDLNGKK-LTQSQMIDLEKQKKILELKKTKQQLAISLMING 144
+L+ TL + L ++ V+ K+ Q+Q L+ + L +T QL I I
Sbjct: 298 --KLEQTLGR---LAAAESVNEKLKQEFDQAQEKSLQSSSESELLAETNNQLKIK--IQE 350
Query: 145 IENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLE----------- 193
+E +E +TA+K LE + + N + + + KL+ ++Q+E
Sbjct: 351 LEGLIGSGSVEK-ETALKRLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASG 409
Query: 194 ---IKKNNLEEALSA---SHYSMGELAFK----ENELLSIAPKNFEFNREQELHNISATN 243
+K LE+ALS ++ EL K E E +A N + N E H A
Sbjct: 410 VADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGDLAEVNLKLNLELANHGSEANE 469
Query: 244 YDIAIARLDEEKSQKDITL-AKKSFLEDV--NVTG-----VYYFRSKQYYNYDMFSIALS 295
++ L+ EK Q L A K+ +ED+ +T S N + ++ S
Sbjct: 470 LQTKLSALEAEKEQTANELEASKTTIEDLTKQLTSEGEKLQSQISSHTEENNQVNAMFQS 529
Query: 296 IPLPIYGKQAKL-----VEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESI 350
+ AKL VE K ++LV SE+E + ++ L E L+K L +
Sbjct: 530 TKEELQSVIAKLEEQLTVESSKADTLV--SEIEKLRAVAAEKSV-LESHFEELEKTLSEV 586
Query: 351 NKIIKQNEK---IAQIYALDLKSNGDYNAYYNAFNDKITIQITQLE 393
+K+N + A + +L S + + D + Q+ QL+
Sbjct: 587 KAQLKENVENAATASVKVAELTSKLQEHEHIAGERDVLNEQVLQLQ 632
>gb|AAL09731.1| (AY057490) At2g32240/F22D22.1 [Arabidopsis thaliana]
gb|AAM13080.1| (AY093081) putative myosin heavy chain [Arabidopsis thaliana]
Length = 568
Score = 48.9 bits (115), Expect = 1e-04
Identities = 89/406 (21%), Positives = 170/406 (40%), Gaps = 52/406 (12%)
Query: 26 SLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSD 85
SL + + +Q + ++ S++ + +L E++ L + + ++ + ++++ +
Sbjct: 34 SLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEGK---IKSYEEQLAEASGKSSSLKE 90
Query: 86 FFRLDSTLMQNMSLGLSQKVDLNGKK-LTQSQMIDLEKQKKILELKKTKQQLAISLMING 144
+L+ TL + L ++ V+ K+ Q+Q L+ + L +T QL I I
Sbjct: 91 --KLEQTLGR---LAAAESVNEKLKQEFDQAQEKSLQSSSESELLAETNNQLKIK--IQE 143
Query: 145 IENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLE----------- 193
+E +E +TA+K LE + + N + + + KL+ ++Q+E
Sbjct: 144 LEGLIGSGSVEK-ETALKRLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASG 202
Query: 194 ---IKKNNLEEALSA---SHYSMGELAFK----ENELLSIAPKNFEFNREQELHNISATN 243
+K LE+ALS ++ EL K E E +A N + N E H A
Sbjct: 203 VADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGDLAEVNLKLNLELANHGSEANE 262
Query: 244 YDIAIARLDEEKSQKDITL-AKKSFLEDV--NVTG-----VYYFRSKQYYNYDMFSIALS 295
++ L+ EK Q L A K+ +ED+ +T S N + ++ S
Sbjct: 263 LQTKLSALEAEKEQTANELEASKTTIEDLTKQLTSEGEKLQSQISSHTEENNQVNAMFQS 322
Query: 296 IPLPIYGKQAKL-----VEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESI 350
+ AKL VE K ++LV SE+E + ++ L E L+K L +
Sbjct: 323 TKEELQSVIAKLEEQLTVESSKADTLV--SEIEKLRAVAAEKSV-LESHFEELEKTLSEV 379
Query: 351 NKIIKQNEK---IAQIYALDLKSNGDYNAYYNAFNDKITIQITQLE 393
+K+N + A + +L S + + D + Q+ QL+
Sbjct: 380 KAQLKENVENAATASVKVAELTSKLQEHEHIAGERDVLNEQVLQLQ 425
>ref|NP_126050.1| (NC_000868) chromosome segregation protein (smc1) [Pyrococcus
abyssi]
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49281.1| (AJ248284) chromosome segregation protein (smc1) [Pyrococcus
abyssi]
Length = 1177
Score = 48.1 bits (113), Expect = 2e-04
Identities = 66/308 (21%), Positives = 129/308 (41%), Gaps = 58/308 (18%)
Query: 104 KVDLNGKKLTQSQMIDLEKQK----KILELKKTKQQLAISLMINGIENYK-----NQQEI 154
+VDL +++ + Q+ LEK++ + L+LK+ ++ + L++ I+ + N + I
Sbjct: 192 RVDLLIREV-KKQLDKLEKERNDALRYLDLKERLERARVELILGEIKKVESEIKGNDERI 250
Query: 155 ELLKTAIKNLENTLYQA------------------NHSSSPNLIAI--------AKLEIL 188
E ++ IK +E L + SS + I +K+ +
Sbjct: 251 EKIEEEIKEIEEKLEEIAKEIVRKERELKEVEELIEKESSEEALKITREIGEVNSKINLA 310
Query: 189 KSQLEIKKNNLEEA--------------LSASHYSMGELAF--KENELLSIAPKNFEFNR 232
K +E+ K L+EA LS S G +A K E L K E R
Sbjct: 311 KRNIEVAKKELDEAQIRLIKAKDELKKVLSEIEKSKGAIARWGKRKEALLNKIKELEEER 370
Query: 233 EQELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSI 292
+ + + + A+AR + + K++ A+KS E N + +++ +I
Sbjct: 371 NKLVVKLGEIDRTFAVAREEFDNVVKELENARKSLYE--NEADIKRLEAEKERLSSRITI 428
Query: 293 ALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINK 352
L LP ++ + + +K +E K+E+ N +NK ++ + K E L+K + K
Sbjct: 429 -LKAKLPGIREEVEKLREKLEEK---KAELSNVENKISSISQRRRKVEEELEKKTSELQK 484
Query: 353 IIKQNEKI 360
+ + E +
Sbjct: 485 VSSELESL 492
>pir||T28677 rhoptry protein - Plasmodium yoelii
gb|AAA21304.1| (L27838) rhoptry protein [Plasmodium yoelii]
Length = 2269
Score = 48.1 bits (113), Expect = 2e-04
Identities = 64/364 (17%), Positives = 155/364 (42%), Gaps = 44/364 (12%)
Query: 32 DLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDS 91
+L I + K ++++ L+E +++L Q+K + L N+ + + +
Sbjct: 1144 NLSIDTQETKLTENGKQLKTLEELLESLKKQKKNIEDQKKE---LDEVNSKIKNIENTVN 1200
Query: 92 TLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQ 151
+N +G+ +K++ ++ ++ +E K+++ K T Q + S N +E +
Sbjct: 1201 QHKKNYEIGIVEKIN----EIAKTNKNQIESTKELI--KPTIQHIISSFNANDLEGIDSD 1254
Query: 152 QEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMG 211
+ + T + N+ ++ + + L ++K I +Q++ K+ + ++ L + ++
Sbjct: 1255 ENLGKYNTEMGNIYEEFIKSYNLITNYLETVSKESITYNQIQNKRIDTQKELLKNIENVN 1314
Query: 212 ELA-----FKENEL----------LSIAPKNF--EFNREQELHNISATNYDIAIARLDEE 254
+ KENE L+ NF E+++ E + + + + DE
Sbjct: 1315 KAKSYLDYIKENEFDRIVTHFKKKLNTVNDNFKNEYSKVNEGFDNISNSINTVKNSTDEN 1374
Query: 255 KSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI-------YGKQAKL 307
+ K+ + VN T Y + ++ +A ++ + I K K+
Sbjct: 1375 SLLNILNQTKEMYANIVNNTYYSYKYEAENIFRNIPKLANTLNIKIKNSSGIDLSKDIKI 1434
Query: 308 -----VEQKKKESLVF------KSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQ 356
++ K +++L+F K+E + ++ + L +LKK + LQK + K+I +
Sbjct: 1435 AILSYLDSKTEDTLIFIPSPQKKTETYTKISDSYSILLDILKKSQELQKKEQQTLKLIFE 1494
Query: 357 NEKI 360
N ++
Sbjct: 1495 NRRL 1498
Score = 43.1 bits (100), Expect = 0.006
Identities = 91/437 (20%), Positives = 184/437 (41%), Gaps = 70/437 (16%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQI-DALSSQEKVVSKWDNPI--------LYLGYNNANVS 84
+I+ + K +I+ ++ I D L++ EKV+ K + + + ++ ++
Sbjct: 868 KIKKIIDKVKEYTSEIEKNKKNINDELNNSEKVIKKIEGDLSLKECRSKINSTLDDKDID 927
Query: 85 DFFRLDSTLMQNMSLGLSQKVDLNG--------KKLTQSQMIDLE----KQKKILELKKT 132
+ + + L +N+ L+++ ++ K+ S ++E K + ILE+KK
Sbjct: 928 ECIKNINVLKKNI---LNEETNITNHFKNAEEYNKIVLSNFNNIEMADNKSQYILEIKKN 984
Query: 133 KQQLAISLMINGIENYKNQQ-----EIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEI 187
I ++++K++ E + K AI+ + Q + L +E
Sbjct: 985 NGTNDHDYNIKELKSHKDKSNGYKTEADQNKKAIQKNKELFEQYKEEVTVLLNKYYAVE- 1043
Query: 188 LKSQLEIKKNN----LEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHN----- 238
LK++ + KN+ ++E A +Y E E ++ I KN + + E E+ N
Sbjct: 1044 LKNKFDKTKNDSKQIIKEIKDAHNYCTLESGKSEKKMNEI--KNEKIHIEDEVANNDKSN 1101
Query: 239 -------ISATNYDIAIARLDEEKSQKDITLAKKSFLE-DVNVTGVYYFRSKQYYNYDMF 290
+S + I +++E +++ D L + + LE ++ + +K N
Sbjct: 1102 KAITSIKVSVEPFKTKIIKINEIRTKSDDCLKETNDLEKQISNLSIDTQETKLTENGKQL 1161
Query: 291 SIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKN------KTHHLAL--KLLKKLET 342
L L KQ K +E +KKE S+++N +N K + + + K+ + +T
Sbjct: 1162 K-TLEELLESLKKQKKNIEDQKKELDEVNSKIKNIENTVNQHKKNYEIGIVEKINEIAKT 1220
Query: 343 LQKNLESINKIIKQNEK--IAQIYALDLK------SNGDYNA----YYNAFNDKITIQIT 390
+ +ES ++IK + I+ A DL+ + G YN Y F +
Sbjct: 1221 NKNQIESTKELIKPTIQHIISSFNANDLEGIDSDENLGKYNTEMGNIYEEFIKSYNLITN 1280
Query: 391 QLETLSALNSTYLSLQN 407
LET+S + TY +QN
Sbjct: 1281 YLETVSKESITYNQIQN 1297
>ref|NP_599220.1| (NM_134393) outer dense fiber ODF3 [Rattus norvegicus]
gb|AAC72233.2| (AF092090) outer dense fiber ODF3 [Rattus norvegicus]
Length = 971
Score = 47.8 bits (112), Expect = 2e-04
Identities = 88/411 (21%), Positives = 167/411 (40%), Gaps = 34/411 (8%)
Query: 29 LAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEK---VVSKWDNPILYLGYNNANVSD 85
L KDL ++ K ++ ++D +E+ V+ K D ++L Y ++
Sbjct: 290 LVKDLRLELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQ 349
Query: 86 FFRLDSTLMQNMSLGLSQKVD-LNG--KKLTQSQMIDLEKQKKILELKKTKQQLAISLMI 142
+ L L K + LN KKLTQ Q + LEK+ ++ +L+ T ++L +L
Sbjct: 350 QYTESQKLSLKKDKLLQDKDERLNELEKKLTQVQCLFLEKETELEKLQSTTKELDANL-- 407
Query: 143 NGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEA 202
+ ++ + E L++ I+ L+ +L +A ++ L K + + NNLE+A
Sbjct: 408 QEVRQSTSKIDNEGLRSEIQKLKESLEEAREQLR---VSDQNLSQCKDEAHLSANNLEDA 464
Query: 203 -------LSASHYSMGELAFKENELLSIAPKNFEF------NREQELHNISATNY-DIAI 248
L + +++L + ++ E NR+Q L S N +
Sbjct: 465 HRKLENCLLQDKRKDDVIKDLQSQLQKLQKESSETEEERKNNRQQLLELSSELNEGQRRL 524
Query: 249 ARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQ---YYNYDMFSIALSIPLPIYGKQA 305
+ ++EKS TL ++ D + G KQ + L+ + ++
Sbjct: 525 SSAEKEKSLLQKTLDEEEKKIDELLHGAKVSEQKQRELTNSLSKLQDELAETKRLLEEKR 584
Query: 306 KLVEQKKKESLVFKSEVE---NTKNKTHHLALKLLKKLETLQKNLES-INKIIKQNEKIA 361
+ + + K + + E+E K +A + L+KLE ++NL++ ++ Q +
Sbjct: 585 EQLRKSKDQEKALEEEIEALRQESKKKEKMAKEQLRKLEEEKENLQAELSSCSSQLDSSI 644
Query: 362 QIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE 412
Y K + N D I I TQL+ SA+ QN+ E
Sbjct: 645 NKYNNSQKVIQELNTEIARQKDSIMILQTQLD--SAIQKEKNCFQNMVSKE 693
>gb|AAC52049.1| (U29343) hyaluronan receptor [Homo sapiens]
Length = 725
Score = 47.8 bits (112), Expect = 2e-04
Identities = 88/394 (22%), Positives = 162/394 (40%), Gaps = 81/394 (20%)
Query: 26 SLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILY-LGYNNANVS 84
+L + KD + + K S K ++ + D K++ K +L G + +
Sbjct: 53 NLNVDKDTTLPASARKVKSSESKKESQKNDKDL-----KILEKEIRVLLQERGAQDRRIQ 107
Query: 85 DFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMING 144
D + ++ L +K L+ T LEKQ ++EL +T + L NG
Sbjct: 108 DLETELEKMEARLNAALREKTSLSANNAT------LEKQ--LIELTRTNELLKSKFSENG 159
Query: 145 IENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALS 204
N KN + + L ++N T + +AK E ++ +L++ + +LEE
Sbjct: 160 --NQKNLRILSLELMKLRNKRETKMRG---------MMAKQEGMEMKLQVTQRSLEE--- 205
Query: 205 ASHYSMGELAFKENELLSIAPKNFEFNREQE-----LHNISATN-----YDIAIARLDEE 254
S G++A E +L+SI + + E E + IS + Y + IA+L+E
Sbjct: 206 ----SQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEEN 261
Query: 255 KSQK--DITLAKKSF----------LEDVNVTGVYYFRSKQYY-----------NYDMFS 291
+K +I K+S +ED+NV K+ + N +M +
Sbjct: 262 LKEKNDEILSLKQSLEDNIVILSKQVEDLNVKCQLLETEKEDHVNRNREHNENLNAEMQN 321
Query: 292 IALSIPL------PIYGKQAK---LVEQKKKES-------LVFKSEVENTKNKTHHLALK 335
+ L + K+ + L++Q+K+ S F+ E+ KN +
Sbjct: 322 LEQKFILEQREHEKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQ 381
Query: 336 LLKKLETLQKNLESINKIIKQNEKIAQIYALDLK 369
L +L+ LQ+ E +++KQ E+ A+ A +LK
Sbjct: 382 TLDELDKLQQKEEQAERLVKQLEEEAKSRAEELK 415
>ref|XP_036988.5| (XM_036988) KIAA1000 protein [Homo sapiens]
Length = 975
Score = 47.4 bits (111), Expect = 3e-04
Identities = 80/368 (21%), Positives = 154/368 (41%), Gaps = 60/368 (16%)
Query: 31 KDLEIQSFVAKYLSKNQKIQAL----QEQIDALSSQE-KVVSKWDNPILYLGYNNANVSD 85
K L+ +A + K+++ QAL Q+++ ALS++ K+ + ++ I+ +
Sbjct: 486 KQLQSGKALADWKQKHEESQALLDASQKEVQALSTELLKLKNTYEESIVG--------QE 537
Query: 86 FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGI 145
R ++ +Q L+ +V K LT+ +EK KK++E +KT+ Q+ + +
Sbjct: 538 TLRRENKNLQEEISNLTNQVREGTKNLTE-----MEKVKKLIEEEKTEVQVTLEETEGAL 592
Query: 146 ENYKNQ---QEIELLKTAIKNLENTLYQANH----------------SSSPNLIAIAKLE 186
E +++ ++ELL+ A LE L + + SS + A +++E
Sbjct: 593 ERNESKILHFQLELLE-AKAELERKLSEKDEEIENFRRKQQCTIDSLQSSLDSEAKSRIE 651
Query: 187 I--LKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNY 244
+ LK ++E N +E LS ++ + E A K L I K+ + + S
Sbjct: 652 VTRLKKKMEEDLNEMELQLSCANRQVSE-ATKSLGQLQIQIKDLQMQLDDSTQLNSDLKE 710
Query: 245 DIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQ 304
+A+A Q + LED+ R ++ ++ I L Y +
Sbjct: 711 QVAVAERRNSLLQSE--------LEDLRSLQEQTERGRRLSEEELLEATERINL-FYTQN 761
Query: 305 AKLVEQKK----------KESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKII 354
L+ QKK KE+ E +N + K A++ E L+K ++I +
Sbjct: 762 TSLLSQKKKLEADVARMQKEAEEVVQECQNAEEKAKKAAIEAANLSEELKKKQDTIAHLE 821
Query: 355 KQNEKIAQ 362
+ E + Q
Sbjct: 822 RTRENMEQ 829
>dbj|BAA76844.1| (AB023217) KIAA1000 protein [Homo sapiens]
Length = 891
Score = 47.4 bits (111), Expect = 3e-04
Identities = 80/368 (21%), Positives = 154/368 (41%), Gaps = 60/368 (16%)
Query: 31 KDLEIQSFVAKYLSKNQKIQAL----QEQIDALSSQE-KVVSKWDNPILYLGYNNANVSD 85
K L+ +A + K+++ QAL Q+++ ALS++ K+ + ++ I+ +
Sbjct: 402 KQLQSGKALADWKQKHEESQALLDASQKEVQALSTELLKLKNTYEESIVG--------QE 453
Query: 86 FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGI 145
R ++ +Q L+ +V K LT+ +EK KK++E +KT+ Q+ + +
Sbjct: 454 TLRRENKNLQEEISNLTNQVREGTKNLTE-----MEKVKKLIEEEKTEVQVTLEETEGAL 508
Query: 146 ENYKNQ---QEIELLKTAIKNLENTLYQANH----------------SSSPNLIAIAKLE 186
E +++ ++ELL+ A LE L + + SS + A +++E
Sbjct: 509 ERNESKILHFQLELLE-AKAELERKLSEKDEEIENFRRKQQCTIDSLQSSLDSEAKSRIE 567
Query: 187 I--LKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNY 244
+ LK ++E N +E LS ++ + E A K L I K+ + + S
Sbjct: 568 VTRLKKKMEEDLNEMELQLSCANRQVSE-ATKSLGQLQIQIKDLQMQLDDSTQLNSDLKE 626
Query: 245 DIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQ 304
+A+A Q + LED+ R ++ ++ I L Y +
Sbjct: 627 QVAVAERRNSLLQSE--------LEDLRSLQEQTERGRRLSEEELLEATERINL-FYTQN 677
Query: 305 AKLVEQKK----------KESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKII 354
L+ QKK KE+ E +N + K A++ E L+K ++I +
Sbjct: 678 TSLLSQKKKLEADVARMQKEAEEVVQECQNAEEKAKKAAIEAANLSEELKKKQDTIAHLE 737
Query: 355 KQNEKIAQ 362
+ E + Q
Sbjct: 738 RTRENMEQ 745
>sp|P06198|MYSP_SCHMA Paramyosin
gb|AAA29915.1| (M36871) paramyosin [Schistosoma mansoni]
Length = 866
Score = 47.4 bits (111), Expect = 3e-04
Identities = 84/354 (23%), Positives = 156/354 (43%), Gaps = 58/354 (16%)
Query: 101 LSQKVDLNGKKLTQSQMI-------------DLEKQKKILELKKT----KQQLAISLMIN 143
LS+++D G TQ+Q + DLE LEL +T + Q A++ +
Sbjct: 62 LSERLDEAGGSTTQTQELLKRREMEINKLRKDLENANASLELAETSMRRRHQTALNELAL 121
Query: 144 GIENYKNQQ-EIELLKT-AIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKK---NN 198
+EN + Q+ + E K+ I ++N L Q + + A +KLE L SQL K ++
Sbjct: 122 EVENLQKQKGKAEKDKSHLIMEVDNVLGQLDGALKAKQSAESKLEGLDSQLNRLKSLTDD 181
Query: 199 LEEALSASHYSMGELAFKENELLSIAPKNFE---FNREQELHNISATNYDIAIARLDEEK 255
L+ L+ + + L + ELL I +++E N + ++ + D+ + DE K
Sbjct: 182 LQRQLTELNNAKSRLTSENFELLHI-NQDYEAQILNYSKAKSSLESQVDDLKRSLDDEAK 240
Query: 256 SQKDITLAKKSFLEDV-NVTGVYYFRSKQ---------YYNYDMFSIALSIPLPIYGKQA 305
++ ++ S D N+ Y S++ +N D+ ++ + K
Sbjct: 241 NRFNLQAQLTSLQMDYDNLQAKYDEESEEASNLRSQVSKFNADIAALKSKFERELMSKTE 300
Query: 306 KLVEQKKKESLVFKSEVENTKNK-------THHLALKLLKKLETLQKNLESI---NKIIK 355
+ E K+K ++ +E+E+T + L KL +++ LQ +ES+ N +
Sbjct: 301 EFEEMKRKFTMRI-TELEDTAERERLKAVSLEKLKTKLTLEIKDLQSEIESLSLENSELI 359
Query: 356 QNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLETL-SALNSTYLSLQNL 408
+ K A+ A DL+ D++TI++ L + S L S L L++L
Sbjct: 360 RRAKAAESLASDLQRR----------VDELTIEVNTLTSQNSQLESENLRLKSL 403
>ref|NP_267477.1| (NC_002662) ATP-dependent dsDNA exonuclease [Lactococcus lactis
subsp. lactis]
sp|Q9CFZ0|SBCC_LACLA Nuclease sbcCD subunit C
gb|AAK05419.1|AE006364_1 (AE006364) ATP-dependent dsDNA exonuclease [Lactococcus lactis
subsp. lactis]
Length = 1046
Score = 46.6 bits (109), Expect = 5e-04
Identities = 76/363 (20%), Positives = 149/363 (40%), Gaps = 39/363 (10%)
Query: 43 LSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNN--ANVSDFF--RLDSTLMQNMS 98
L KN+++Q L+ ++ +K+ + L + Y+ A+ S F D +
Sbjct: 564 LEKNKQLQQLKTELKTSLDLKKIEADEFEKELSILYSEFIADYSQIFPDSFDEVSIDESL 623
Query: 99 LGLSQKVDLNGKKL--TQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIEL 156
L L++ ++L K T+ ++ DLE +K LEL++ + S N + ++IE
Sbjct: 624 LNLTKSLELEEVKNDETKVKLADLESKK--LELQEKVKDFEYS-------NQEFNRQIEN 674
Query: 157 LKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFK 216
L I + T +S NLI +++L K + E+ LS + ++ K
Sbjct: 675 LNAEITEIGIT------ETSYNLIR------KRNRLMEKADLFEKHLSELMAQLSDIKIK 722
Query: 217 ENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGV 276
+ + + +FE L ISA I ++E + + K+ +D +
Sbjct: 723 ISSQTA-SLNSFESQEATLLERISANKEKIKEKFSEQEAFTTEFQILKEWAYDD---DLI 778
Query: 277 YYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL 336
+ + Y D + + I +L++ KK+ +L +E K +T+ + L
Sbjct: 779 QISQKVEQYKADKARLKVEIK-----NIQQLIQNKKRPNLAL---IEEEKKQTNENYVFL 830
Query: 337 LKKLETLQKNLESINKIIKQNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLS 396
KKL + + +E I+ + +K+ + D YNA + + + +LET
Sbjct: 831 QKKLVSAENEVEQAKSILSELKKVIKQQDKDASKKSAITKLYNAISGRASEDKLRLETYV 890
Query: 397 ALN 399
N
Sbjct: 891 VQN 893
>ref|XP_168207.1| (XM_168207) hypothetical protein XP_168207 [Homo sapiens]
Length = 3919
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 2223 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 2282
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 2283 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 2339
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 2340 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 2399
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 2400 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 2456
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 2457 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 2505
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 2506 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2560
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 2561 EKVAAALVSQIQLEAVQEY 2579
>ref|NP_005742.3| (NM_005751) A kinase (PRKA) anchor protein 9; yotiao; A-kinase
anchoring protein 450 [Homo sapiens]
emb|CAB40713.1| (AJ131693) AKAP450 protein [Homo sapiens]
Length = 3908
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 2212 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 2271
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 2272 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 2328
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 2329 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 2388
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 2389 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 2445
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 2446 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 2494
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 2495 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2549
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 2550 EKVAAALVSQIQLEAVQEY 2568
>dbj|BAA92710.1| (AB032197) myosin heavy chain [Gallus gallus]
Length = 1937
Score = 46.2 bits (108), Expect = 7e-04
Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 36/331 (10%)
Query: 39 VAKYLSKNQKIQALQEQI-DALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNM 97
++K + + +Q +Q+ D L ++E V+ + L V D L+ +L Q
Sbjct: 990 ISKLTKEKKSLQEAHQQVLDDLQAEEDKVNTLSKAKVKL---EQQVDD---LEGSLEQEK 1043
Query: 98 SLGLS---QKVDLNGK-KLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQE 153
+ + K L G KLTQ ++DLE K +E K K++ +S + + IE+ Q
Sbjct: 1044 KVRMDLERAKRKLEGDLKLTQESVMDLENDKLQMEEKLKKKEFEMSQLNSKIED--EQAI 1101
Query: 154 IELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKS----QLEIKKNNLEEALSASHYS 209
+ L+ IK L+ + + A AK+E +S +LE+ LEEA A+
Sbjct: 1102 VMQLQKKIKELQARIEELEEELEAERAARAKVEKQRSDLARELEVLSERLEEAGGATAAQ 1161
Query: 210 MGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAKKSFLE 269
+ +E E L +A ++ E E LH Y+ A L K D L+
Sbjct: 1162 LEMNKKREAEFLKLA-RDLE---EATLH------YEATAAAL--RKKHADSVAEMGEQLD 1209
Query: 270 DVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKT 329
++ + K ++ + ++ + GK +K ++ + TK K
Sbjct: 1210 NLQRVKQKLEKEKSELKMEVDDLTSNMEQTVKGK-----ANAEKLCRTYEDHLNETKTKL 1264
Query: 330 HHLALKLLKKLETLQKNLESIN-KIIKQNEK 359
+ +L+ L T + L+S N + ++Q E+
Sbjct: 1265 DEMT-RLMNDLTTQKTKLQSENGEFVRQLEE 1294
>sp|Q99996|AKA9_HUMAN A-kinase anchor protein 9 (Protein kinase A anchoring protein 9)
(PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450)
(A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP 350)
(AKAP 120 like protein) (Hyperion protein) (Yotiao
protein) (Centrosome- and>
emb|CAA09361.1| (AJ010770) Hyperion protein [Homo sapiens]
Length = 3911
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 2223 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 2282
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 2283 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 2339
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 2340 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 2399
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 2400 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 2456
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 2457 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 2505
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 2506 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2560
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 2561 EKVAAALVSQIQLEAVQEY 2579
>emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum 3D7]
Length = 1946
Score = 46.2 bits (108), Expect = 7e-04
Identities = 92/406 (22%), Positives = 158/406 (38%), Gaps = 77/406 (18%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSSQEKV----VSKWDNPILYLGYN-NANVSDFFR 88
+I K ++ + I QI+ L + K+ ++K+DN I L Y N ++
Sbjct: 1234 KIDDIKKKLKTQEEIISQKDRQIETLENNLKIGKEKINKFDNEIQKLQYKINIHIEKETE 1293
Query: 89 LDST--LMQNMSLGLSQKVDLNGKKLTQ--SQMIDLEKQKKILELKKTKQQLAISLMING 144
+ T + + + LS K D+ K+ +++ L K +K + + K L +
Sbjct: 1294 IKKTNDIEKEKNTKLSNKFDIINKENNNLHNKIETLLKNEKEISTENVK--LIETNKTLY 1351
Query: 145 IENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILK--------------- 189
IEN K + LK +K E N + ++ I +L+ K
Sbjct: 1352 IENEKLSND---LKNTLKEKEKIQENYNKINKEHIKIIEELQSYKEIKEKHMKEITQIKE 1408
Query: 190 ---------SQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS 240
+Q++I+KNN EE+ ENE +S N + +EL
Sbjct: 1409 QIHNLDKHIAQIQIEKNNFEESYLKEK--------NENEKMS----NILEEKYKELSTYE 1456
Query: 241 ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI 300
I D EK +++I L K E++N Y M L +
Sbjct: 1457 IDKNINKIKIEDLEKDKENILLTKN---EEIN---------NLKEEYKMVQQHLEDTNVL 1504
Query: 301 YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLE-SINKIIKQNEK 359
Y KQ ++ KE +E + KNK KL KL+ Q N E ++N I K+N++
Sbjct: 1505 YEKQKLAIDTITKEKNNIINECDKIKNKNK----KLNNKLKENQNNYEHTLNNIKKENQQ 1560
Query: 360 IAQ---------IYALDLKSNGDYNAYYNAFNDKITIQITQLETLS 396
I + + +L+ YN + N+ + QI QL+ ++
Sbjct: 1561 IIEREKKNFTQKVESLEHAFKQSYNQLKDQ-NENLQQQIKQLKNVN 1605
>gb|AAD22767.1|AF083037_1 (AF083037) A-kinase anchoring protein AKAP350 [Homo sapiens]
Length = 3595
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 1899 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 1958
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 1959 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 2015
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 2016 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 2075
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 2076 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 2132
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 2133 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 2181
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 2182 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2236
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 2237 EKVAAALVSQIQLEAVQEY 2255
>ref|NP_578896.1| (NC_003413) smc-like [Pyrococcus furiosus DSM 3638]
sp|P58301|RA50_PYRFU DNA double-strand break repair rad50 ATPase
gb|AAL81291.1| (AE010225) smc-like [Pyrococcus furiosus DSM 3638]
Length = 882
Score = 46.2 bits (108), Expect = 7e-04
Identities = 85/411 (20%), Positives = 164/411 (39%), Gaps = 78/411 (18%)
Query: 47 QKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKVD 106
++I+ +E ++ L +EK + + I + +V + L +N L K++
Sbjct: 265 ERIKNTEEYLEKLKEKEKELEEQVKEITSI---KKDVDAYLALKE--FKNEYLDKKYKIE 319
Query: 107 LNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLEN 166
K+LT+ + + E QK+I EL + + + E +N+++ L K AI ++
Sbjct: 320 ---KELTRVEELINEIQKRIEELNEKESEK---------EKLENEKKEILNKLAILEKDH 367
Query: 167 TLYQANHSSSPNLIAIAK---------LEILKSQLEIKKNNLEEALSASHYSMGELAFKE 217
LY+ + NL + + ++ L +LE KK +EE + +GEL K
Sbjct: 368 QLYEEIKAKKENLRQLKEKLGDKSPEDIKKLLEELETKKTTIEEERNEITQRIGELKNKI 427
Query: 218 NELLS-------------IAPKNFEFNREQEL---HNISATNYDIAIARLDEEKSQKD-- 259
+L + + + +EL +++ N +A+L + KS+ +
Sbjct: 428 GDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERE 487
Query: 260 --------------ITLAK--KSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGK 303
+T+A+ +S E++NV + K N + L + G+
Sbjct: 488 LRRIDMEIKRLTPLLTVAEQIRSIEEELNVVNL----EKIEKNATEYEKLLEELRTLEGR 543
Query: 304 QAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESIN--KIIKQNEKIA 361
L E KK + +E H +L K+L+ L LES + + K+
Sbjct: 544 IRGLAEDLKK-----LAPLEKKLAALIHKKQELEKELKELNTKLESFGFKSVEDLDSKLR 598
Query: 362 QIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKGLE 412
++ + Y Y N K ++ITQ E A + +S + L +E
Sbjct: 599 ELEEI-------YKRYLTLLNSKKELEITQREIAKAKETLEMSFEELAEVE 642
>dbj|BAA78718.1| (AB019691) Centrosome- and Golgi-localized PKN-associated protein
(CG-NAP) [Homo sapiens]
Length = 3899
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 2203 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 2262
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 2263 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 2319
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 2320 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 2379
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 2380 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 2436
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 2437 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 2485
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L ++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 2486 --IINLETRL---RQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2540
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 2541 EKVAAALVSQIQLEAVQEY 2559
Score = 44.3 bits (103), Expect = 0.003
Identities = 73/343 (21%), Positives = 148/343 (42%), Gaps = 26/343 (7%)
Query: 36 QSFVAKYLSKNQKIQALQ--EQIDALSSQEKVVSKWDN-PILYLGYNNANVSDFFRLDST 92
Q + +++++ ++I+ E +AL S + D ++ + N N+ +L T
Sbjct: 450 QELIRQHMAQMEEIKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNI----KLQDT 505
Query: 93 LMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKIL--ELKKTKQQLAIS-LMINGIENYK 149
Q L + L K Q Q+ DL ++ ++++ +Q +A +N E +K
Sbjct: 506 NSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSRGQIQRARQTIAEQESKLN--EAHK 563
Query: 150 NQQEIELLKTAIKNLENTL--YQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASH 207
+ +E LK I + + + H + I KLE+L+ + + + E+ A
Sbjct: 564 SLSTVEDLKAEIVSASESRKELELKHEAEVTNYKI-KLEMLEKEKNAVLDRMAESQEAEL 622
Query: 208 YSMG-ELAFKENELLSIAPKNFEFNRE---QELHNISATNYDIAIARLDEEKSQKDITLA 263
+ +L F E LS ++ E ++L + +Y I L E SQK T+
Sbjct: 623 ERLSTQLLFSHEEELSKLKEDLEIEHRISIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQ 682
Query: 264 --KKSFLEDVN--VTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFK 319
K + + N + + + Q + S +++ + K+ +++ Q++KE +
Sbjct: 683 FEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLE 742
Query: 320 SEVENTKNKTHHLALKLLKKLETLQK---NLESINKIIKQNEK 359
EV+ + KT L ++ +K LQ+ LE+ N I+K +K
Sbjct: 743 QEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKK 785
>ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 46.2 bits (108), Expect = 7e-04
Identities = 92/406 (22%), Positives = 158/406 (38%), Gaps = 77/406 (18%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSSQEKV----VSKWDNPILYLGYN-NANVSDFFR 88
+I K ++ + I QI+ L + K+ ++K+DN I L Y N ++
Sbjct: 1234 KIDDIKKKLKTQEEIISQKDRQIETLENNLKIGKEKINKFDNEIQKLQYKINIHIEKETE 1293
Query: 89 LDST--LMQNMSLGLSQKVDLNGKKLTQ--SQMIDLEKQKKILELKKTKQQLAISLMING 144
+ T + + + LS K D+ K+ +++ L K +K + + K L +
Sbjct: 1294 IKKTNDIEKEKNTKLSNKFDIINKENNNLHNKIETLLKNEKEISTENVK--LIETNKTLY 1351
Query: 145 IENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILK--------------- 189
IEN K + LK +K E N + ++ I +L+ K
Sbjct: 1352 IENEKLSND---LKNTLKEKEKIQENYNKINKEHIKIIEELQSYKEIKEKHMKEITQIKE 1408
Query: 190 ---------SQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS 240
+Q++I+KNN EE+ ENE +S N + +EL
Sbjct: 1409 QIHNLDKHIAQIQIEKNNFEESYLKEK--------NENEKMS----NILEEKYKELSTYE 1456
Query: 241 ATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPI 300
I D EK +++I L K E++N Y M L +
Sbjct: 1457 IDKNINKIKIEDLEKDKENILLTKN---EEIN---------NLKEEYKMVQQHLEDTNVL 1504
Query: 301 YGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLE-SINKIIKQNEK 359
Y KQ ++ KE +E + KNK KL KL+ Q N E ++N I K+N++
Sbjct: 1505 YEKQKLAIDTITKEKNNIINECDKIKNKNK----KLNNKLKENQNNYEHTLNNIKKENQQ 1560
Query: 360 IAQ---------IYALDLKSNGDYNAYYNAFNDKITIQITQLETLS 396
I + + +L+ YN + N+ + QI QL+ ++
Sbjct: 1561 IIEREKKNFTQKVESLEHAFKQSYNQLKDQ-NENLQQQIKQLKNVN 1605
>pir||T00637 hypothetical protein H_GS541B18.1 - human (fragment)
gb|AAB96867.1| (AC004013) Similar to rabbit A-kinase-anchoring protein (AKAP120);
81% Similarity to U26360 (PID:g1143826) [Homo sapiens]
Length = 1922
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 419 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 478
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 479 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 535
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 536 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 595
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 596 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 652
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 653 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 701
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 702 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 756
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 757 EKVAAALVSQIQLEAVQEY 775
>gb|AAD39719.1|AF091711_1 (AF091711) splice variant AKAP350 [Homo sapiens]
Length = 1773
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 59 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 118
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 119 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 175
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 176 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 235
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 236 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 292
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 293 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 341
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 342 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 396
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 397 EKVAAALVSQIQLEAVQEY 415
>dbj|BAA34523.1| (AB018346) KIAA0803 protein [Homo sapiens]
Length = 1708
Score = 46.2 bits (108), Expect = 7e-04
Identities = 78/379 (20%), Positives = 160/379 (41%), Gaps = 60/379 (15%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSS----------QEKVVSKWDNPILYLGYNNANV 83
+++ F + +KN+++Q L Q++ QE + K D L L ++
Sbjct: 12 QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 71
Query: 84 SD------FFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKT---KQ 134
F + ++Q + + Q LN + Q + + K++E K
Sbjct: 72 MSTQDQHVLFGKFAQIIQEKEVEIDQ---LNEQVTKLQQQLKITTDNKVIEEKNELIRDL 128
Query: 135 QLAISLMINGIENYKN--QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAK-LEILKSQ 191
+ I +++ E K ++EIE L I+ L+ L +S N ++++ + LK Q
Sbjct: 129 ETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQ 188
Query: 192 LEI---KKNNLEEALSASHYSMG-------ELAFKENELLSIAPKNFEFNREQE----LH 237
L++ +K LE+ + ++ M E FK N+L + F RE+E +
Sbjct: 189 LDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ---ELFSLKRERESVEKIQ 245
Query: 238 NISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+I + ++AI L ++K + ++ L + + N T YF+S +
Sbjct: 246 SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQT---YFKSFEENGKGS-------- 294
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLET--LQKNLESINKIIK 355
I + +L++ ES V ++E T+ ++ + ET LQK + ++ KI++
Sbjct: 295 --IINLETRLLQL---ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 349
Query: 356 QNEKIAQIYALDLKSNGDY 374
+ A + + L++ +Y
Sbjct: 350 EKVAAALVSQIQLEAVQEY 368
>gb|AAK18791.1|AF305599_1 (AF305599) LMP1 [Borrelia burgdorferi]
Length = 849
Score = 45.8 bits (107), Expect = 0.001
Identities = 73/323 (22%), Positives = 127/323 (38%), Gaps = 53/323 (16%)
Query: 104 KVDLNGKK-----LTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLK 158
K +L+GK L SQ I+ +KQ L +K + + L Y N
Sbjct: 201 KKNLSGKSNSENILNDSQKIENDKQNTNLSKEKNSENI---LKTPDNSKYSNNNNT---- 253
Query: 159 TAIKNLENTLYQANHSSSPNLIAIAKL-----------------EILKSQLEIKKNNLEE 201
T++K + + + + S P+ I K+ +I ++ + KN L+E
Sbjct: 254 TSLKKISSNSQKESELSPPSQTIIGKIYRPYSYLIKKELYEILDDINTGRVTLGKNRLKE 313
Query: 202 ----ALSASHYSMGELAFKE------NELLSIAPKNFEFNREQELHNISATNYDIAIARL 251
LS + EL N LL++ K+ E N L NI Y I +L
Sbjct: 314 LIKKGLSNKFQKVNELIENSKNKEASNLLLTLIKKDIEPN----LINIPKDPYKKEIFQL 369
Query: 252 DEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQK 311
D+E + KS + + + +S+Q D+ + P + +K + Q
Sbjct: 370 DKEDKKPQYLEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPND--AQASKTLAQA 427
Query: 312 KKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQ---IYALDL 368
K +E+ K+K H + L+ ++ Q+ ++ +N+ +K N AQ A
Sbjct: 428 NKIQ-----HLEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQAY 482
Query: 369 KSNGDYNAYYNAFNDKITIQITQ 391
++NGD NA+ I + TQ
Sbjct: 483 ENNGDLLKAENAYEKIIKLTNTQ 505
>ref|NP_473081.1| (NC_000910) hypothetical protein [Plasmodium falciparum]
pir||E71606 hypothetical protein PFB0765w - malaria parasite (Plasmodium
falciparum)
gb|AAC71942.1| (AE001417) hypothetical protein [Plasmodium falciparum 3D7]
Length = 980
Score = 45.8 bits (107), Expect = 0.001
Identities = 70/345 (20%), Positives = 152/345 (43%), Gaps = 40/345 (11%)
Query: 31 KDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLD 90
K+ +I++ L K + I+ L++++ + + + N + L + V + R++
Sbjct: 383 KEDKIKNLEDDLLEKKKCIENLKDELINIKKKMEDKMHMTNEMDLL---SNKVEELNRIN 439
Query: 91 STLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILEL--KKTKQQLAISLMINGIENY 148
T +N+ + L+ ++D+ KKL + + E++KK +++ K + ++ I N I++
Sbjct: 440 KTYEKNI-VELNNELDVIKKKLNDEEFLKEEEKKKNIDMVYKIKEYEIQIKEKENEIDSL 498
Query: 149 -KNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKK---NNLEEALS 204
KN+Q + +LK N + + + + N+I +E +++ +K NN +++
Sbjct: 499 KKNEQNLHVLKNEELNEKEIILKNKYDKEINMI----IEQYNKKIQEEKDMLNNKIKSMD 554
Query: 205 ASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAK 264
+H + E +EN+ + L N+ N I + EK ++
Sbjct: 555 QTHKNQIEEMQEENK-----------KELKRLKNVCDMNLQSQILIKENEKHMQEKVEEY 603
Query: 265 KSFL--EDVNVTGVY--YFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKS 320
K+ L +D + + Y + N +M I + KQAK+ +K L +
Sbjct: 604 KNLLKQKDQELKNIIQEYDERIEIQNKEMEDIVNDCEEKL--KQAKINNKK----LTTAT 657
Query: 321 EVENTKNKTHHLALKLLKK-----LETLQKNLESINKIIKQNEKI 360
+ N N LK K ++ ++K E INK++++ K+
Sbjct: 658 NMANNNNMLMDENLKEKDKKINDLMKDMEKKKEEINKLVEEKSKL 702
>sp|O33600|RA50_SULAC DNA double-strand break repair rad50 ATPase
emb|CAA71688.1| (Y10687) purine NTPase [Sulfolobus acidocaldarius]
emb|CAD26845.1| (AJ437617) Rad50 protein [Sulfolobus acidocaldarius]
Length = 886
Score = 45.4 bits (106), Expect = 0.001
Identities = 75/323 (23%), Positives = 126/323 (38%), Gaps = 33/323 (10%)
Query: 46 NQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKV 105
N+KI+ + ++ +EK +K + + L N ++ S L+Q SL V
Sbjct: 254 NKKIEEIALRLKDFEEKEKRYNKIETEVKELDENREKINTISSFKSILVQIDSLKSQINV 313
Query: 106 ---DLNGKKLTQSQMIDL-EKQKKILELKKTKQQLAISLMINGIENYKNQQEIE-LLKTA 160
DL KK + +L EK+K+ E++K K++L E K +EIE L
Sbjct: 314 VENDLKRKKEKLKRKKELEEKEKQYEEIEKRKKELE--------EKEKQYEEIEKRLTYV 365
Query: 161 IKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKENEL 220
+KN+E Q N N + LE + + N ++ L G+L ++ +
Sbjct: 366 LKNIER---QKNEIEKLNYVDTQDLENKIKDVSDRINQIDNELKGLLDRRGDLNGRKEQT 422
Query: 221 LSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAKKSFLE-DVNVTGVYYF 279
L I L++I I LD E K K LE + +T +
Sbjct: 423 LKI---------YNNLNSIEDDRCPICGRPLDSEHKAKIREEIKVQLLELNKQITALQAR 473
Query: 280 RS---KQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL 336
+ K+ + L + L K+ + E K KE +E KNK + L L
Sbjct: 474 INSLIKEREELEATRNKLQLELQKRSKEKGIYEAKLKE----LQRLEEEKNKLQNEILSL 529
Query: 337 LKKLETLQKNLESINKIIKQNEK 359
L + + E ++I +E+
Sbjct: 530 LSYHQEFENIAEKEKELIDYHEE 552
>pir||A41604 myosin heavy chain, smooth muscle, long splice form - rabbit
Length = 1972
Score = 45.1 bits (105), Expect = 0.002
Identities = 81/412 (19%), Positives = 169/412 (40%), Gaps = 70/412 (16%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFR-LDST 92
E+Q K+ +++ LQEQ+ A + ++ ++ + + L + + +++
Sbjct: 874 ELQELQQKHTQLSEEKNLLQEQLQA---ETELYAEAEEMRVRLAAKKQELEEILHEMEAR 930
Query: 93 LMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQ-------KKILELKKTKQQLAI-----SL 140
L + G Q++ KK+ Q QM+DLE+Q ++ L+L+K + I +
Sbjct: 931 LEEEEDRG--QQLQAERKKMAQ-QMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDI 987
Query: 141 MINGIENYKNQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLE 186
++ +N K +E +LL+ I +L L + + S + + K E
Sbjct: 988 LVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1047
Query: 187 ILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDI 246
+ +LE K ++ S H + +L + EL K +E+EL
Sbjct: 1048 KSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQLAK-----KEEEL--------QA 1094
Query: 247 AIARLDEEKSQKDITLAK--------KSFLEDVNVTGVYYFRSKQY-----YNYDMFSIA 293
A+ARL++E SQK+ L K ED++ ++++ +
Sbjct: 1095 ALARLEDETSQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154
Query: 294 LSIPLPIYGKQAKLVEQKKKESLVFK-----------SEVENTKNKTHHLALKLLKKLET 342
L L Q +L ++++E V K ++V+ + K + +L ++LE
Sbjct: 1155 LEDTLDTTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQVVEELTEQLEQ 1214
Query: 343 LQKNLESINKIIKQNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLET 394
++ +++K + EK A +L+ G K+ +Q+ +L++
Sbjct: 1215 FKRAKANLDKTKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQELQS 1266
>gb|AAK19244.1|AF312916_1 (AF312916) reticulocyte binding protein 2 homolog A [Plasmodium
falciparum]
Length = 3130
Score = 45.1 bits (105), Expect = 0.002
Identities = 81/415 (19%), Positives = 159/415 (37%), Gaps = 91/415 (21%)
Query: 28 GLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFF 87
GL D++ + + Y +Q+ +++ ++ + + + N + Y+ N ++++
Sbjct: 589 GLKNDIDELNSLISYFKDSQETLIKDDEL-----KKNMKTDYLNNVKYIEENVTHINEII 643
Query: 88 RLDSTLMQNM-------SLGL-------------SQKVDLNGKKLTQSQMIDLEKQKKIL 127
L ++ Q + SL L +KV N KL + +LE + +
Sbjct: 644 LLKDSITQRIADIDELNSLNLININDFINEKNISQEKVSYNLNKLYKGSFEELESE--LS 701
Query: 128 ELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEI 187
TK +N ++ N E K +N N++++ N+I + K E
Sbjct: 702 HFLDTKYLFHEKKSVNELQTILNTSNNECAKLNFMKSDNN----NNNNNSNIINLLKTE- 756
Query: 188 LKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIA 247
L L +K+N +++ L+ + EQ + N S+ Y I
Sbjct: 757 LSHLLSLKENIIKKLLN--------------------------HIEQNIQN-SSNKYTIT 789
Query: 248 IARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIY--GKQA 305
DI + + E++ S + Y + + +I L +Y K A
Sbjct: 790 YT---------DINNRMEDYKEEIE--------SLEVYKHTIGNIQKEYILHLYENDKNA 832
Query: 306 KLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNL----ESINKIIKQNEKIA 361
V + L +K ++N KNK +K+LKK + + ++L E ++K +K N I
Sbjct: 833 LAVHNTSMQILQYKDAIQNIKNKISD-DIKILKKYKEMNQDLLNYYEILDKKLKDNTYIK 891
Query: 362 QIYALDLKSNGDYNAYYN--------AFNDKITIQITQLETLSALNSTYLSLQNL 408
+++ L Y Y + FN+ L+ ++A+N LQ L
Sbjct: 892 EMHTASLVQITQYIPYEDKTISELEQEFNNNNQKLDNILQDINAMNLNINILQTL 946
>sp|P32985|BPS2_ACIAM Protein bps2
pir||S22195 bps2 protein - Desulfurolobus ambivalens
emb|CAA45528.1| (X64202) bps2 [Acidianus ambivalens]
Length = 582
Score = 45.1 bits (105), Expect = 0.002
Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 35/294 (11%)
Query: 125 KILELKKTKQQLAISLMINGIE----NYKNQQEIELLKTAIKNLENTLYQANH------- 173
KI ELK K+++ L E N K+++ IEL +T IK +E+ + +
Sbjct: 129 KINELKSKKEEMETKLHNLQAEIDDLNRKHKEAIEL-QTKIKQIEDEIARLEKEKESDKV 187
Query: 174 -SSSPNLIAIA---KLEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFE 229
+ + I+I KL +K ++E+KK LE+ + E+ KE S+A
Sbjct: 188 LNKTTQTISITNENKLRDIKEKIEVKKRELEDLQNRIARLDQEIKNKE----SLASPEIR 243
Query: 230 FNREQELHNISATNYDIAIARLDE-------EKSQKDITLAKKSFLEDVNVTGVYYFRSK 282
+ E++L I+A I R + EK I ++K L V G + S
Sbjct: 244 QSYERQLQEINAQLQKITAQRNEAEIEIRLLEKVLDQIRESEKQHLTTCYVCGSHVDPSI 303
Query: 283 QYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLA---LKLLKK 339
D+ S L +Y ++++ E L KSE+E + ++ KL
Sbjct: 304 WKVRIDVISKELQEKNSLYAG----IKKEADELLSKKSEIEKKLKELDQISSEISKLKMS 359
Query: 340 LETLQKNLESINKIIKQNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLE 393
L+ +ES+ I E+ + N + Y+ ND I +I +L+
Sbjct: 360 RSELENRIESVKSTIDDLERQRREMEERFNRNAEIYRVYD-INDSINKRIEELK 412
>sp|P35748|MYHB_RABIT Myosin heavy chain, smooth muscle isoform (SMMHC)
gb|AAA31395.1| (M77812) myosin heavy chain [Oryctolagus cuniculus]
Length = 1972
Score = 45.1 bits (105), Expect = 0.002
Identities = 81/412 (19%), Positives = 169/412 (40%), Gaps = 70/412 (16%)
Query: 34 EIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFR-LDST 92
E+Q K+ +++ LQEQ+ A + ++ ++ + + L + + +++
Sbjct: 874 ELQELQQKHTQLSEEKNLLQEQLQA---ETELYAEAEEMRVRLAAKKQELEEILHEMEAR 930
Query: 93 LMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQ-------KKILELKKTKQQLAI-----SL 140
L + G Q++ KK+ Q QM+DLE+Q ++ L+L+K + I +
Sbjct: 931 LEEEEDRG--QQLQAERKKMAQ-QMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDI 987
Query: 141 MINGIENYKNQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLE 186
++ +N K +E +LL+ I +L L + + S + + K E
Sbjct: 988 LVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1047
Query: 187 ILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDI 246
+ +LE K ++ S H + +L + EL K +E+EL
Sbjct: 1048 KSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQLAK-----KEEEL--------QA 1094
Query: 247 AIARLDEEKSQKDITLAK--------KSFLEDVNVTGVYYFRSKQY-----YNYDMFSIA 293
A+ARL++E SQK+ L K ED++ ++++ +
Sbjct: 1095 ALARLEDETSQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154
Query: 294 LSIPLPIYGKQAKLVEQKKKESLVFK-----------SEVENTKNKTHHLALKLLKKLET 342
L L Q +L ++++E V K ++V+ + K + +L ++LE
Sbjct: 1155 LEDTLDTTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQVVEELTEQLEQ 1214
Query: 343 LQKNLESINKIIKQNEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLET 394
++ +++K + EK A +L+ G K+ +Q+ +L++
Sbjct: 1215 FKRAKANLDKTKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQELQS 1266
>gb|AAM11006.1| (AY094653) AT11177p [Drosophila melanogaster]
Length = 740
Score = 45.1 bits (105), Expect = 0.002
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 25/226 (11%)
Query: 44 SKNQKIQALQEQIDALSSQ-EKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLS 102
SK+ +++A++ Q+D EK+V K P L G + + S + D +N ++
Sbjct: 23 SKDSELEAIERQVDRYRDTIEKIVRKL--PALSGGGGSGSGSSEEQ-DKRTKKNSHYKIA 79
Query: 103 QKVDLNGKKLTQSQMIDLEKQKKIL---ELKKTKQQLAISLMING----IENYKN--QQE 153
Q +D + K+L + D+ QK + EL+KT + I + + KN +E
Sbjct: 80 QALDESAKELPK----DMPLQKVLANCGELEKTMAECIIESELETEAKVVRRLKNILDKE 135
Query: 154 IELLKTAIKNLENTLYQANHSSSPNLIAI------AKLEILKSQLEIKKNNLEEALSASH 207
I+ + T +N+ TL + + AI AK+ +KSQ E + LE+ A
Sbjct: 136 IQEISTLKRNVSRTLQEYTSLKRSHEAAIRLEEPAAKVNHIKSQQEECELKLEKERDAWA 195
Query: 208 YSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDE 253
M EL KE+E++S +++ N ++ H + + + ++AR+ +
Sbjct: 196 AQMLELIAKEDEIVSCI-RDYVLN-QRNYHERALQHVNASLARIQD 239
>gb|AAF55715.1| (AE003728) CG4755 gene product [Drosophila melanogaster]
Length = 740
Score = 45.1 bits (105), Expect = 0.002
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 25/226 (11%)
Query: 44 SKNQKIQALQEQIDALSSQ-EKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLS 102
SK+ +++A++ Q+D EK+V K P L G + + S + D +N ++
Sbjct: 23 SKDSELEAIERQVDRYRDTIEKIVRKL--PALSGGGGSGSGSSEEQ-DKRTKKNSHYKIA 79
Query: 103 QKVDLNGKKLTQSQMIDLEKQKKIL---ELKKTKQQLAISLMING----IENYKN--QQE 153
Q +D + K+L + D+ QK + EL+KT + I + + KN +E
Sbjct: 80 QALDESAKELPK----DMPLQKVLANCGELEKTMAECIIESELETEAKVVRRLKNILDKE 135
Query: 154 IELLKTAIKNLENTLYQANHSSSPNLIAI------AKLEILKSQLEIKKNNLEEALSASH 207
I+ + T +N+ TL + + AI AK+ +KSQ E + LE+ A
Sbjct: 136 IQEISTLKRNVSRTLQEYTSLKRSHEAAIRLEEPAAKVNHIKSQQEECELKLEKERDAWA 195
Query: 208 YSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDE 253
M EL KE+E++S +++ N ++ H + + + ++AR+ +
Sbjct: 196 AQMLELIAKEDEIVSCI-RDYVLN-QRNYHERALQHVNASLARIQD 239
>gb|AAL93605.1| (AC116102) hypothetical protein [Dictyostelium discoideum]
Length = 1080
Score = 45.1 bits (105), Expect = 0.002
Identities = 68/304 (22%), Positives = 128/304 (41%), Gaps = 59/304 (19%)
Query: 79 NNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMI-DLEKQ--KKILELKKTKQQ 135
NN N S + Q D+NGK+LT ++I +L++Q ++LE +K +++
Sbjct: 309 NNGNNMGGSGSSSLASSTNGINKQQSNDINGKELTHEELIAELQRQSDSRLLEARKLREE 368
Query: 136 LAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIK 195
AI L +E++ ++ I+ + Q +S P + + +++ +L+I
Sbjct: 369 KAILL-----------KELQQIQIDIRVIPEERIQ---NSMPYQVLRQRYQLVSDELDIH 414
Query: 196 KNNLEEALS-ASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEE 254
+N + + + ++G +E A + FE +R Q + + ++ L E
Sbjct: 415 RNQCTKLQNDLAQATIGRRLERE------ALEAFEAHRRQNIER-RVSQLEVESIELKGE 467
Query: 255 KSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKE 314
K +K + L ++ + NV + Y + + + K+ ++Q +KE
Sbjct: 468 K-EKLVCLIEQ---RNPNVPSLQYIQESRL---------------LLDKKDDEIKQLRKE 508
Query: 315 SLVFKSEVENTKNKTHHL-ALKLLKKLETLQKN------LESINKIIKQNEKIAQIYALD 367
K ++E K + KLL + + KN LE IN I KQN D
Sbjct: 509 IEQLKLDIEKYKAPKEEIERYKLLVQRDVESKNIEINKLLEKINTITKQNN--------D 560
Query: 368 LKSN 371
LKSN
Sbjct: 561 LKSN 564
>gb|AAK19245.1|AF312917_1 (AF312917) reticulocyte binding protein 2 homolog B [Plasmodium
falciparum]
gb|AAG02259.1| (AY005149) reticulocyte binding protein analog [Plasmodium
falciparum]
Length = 3254
Score = 45.1 bits (105), Expect = 0.002
Identities = 81/415 (19%), Positives = 159/415 (37%), Gaps = 91/415 (21%)
Query: 28 GLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFF 87
GL D++ + + Y +Q+ +++ ++ + + + N + Y+ N ++++
Sbjct: 589 GLKNDIDELNSLISYFKDSQETLIKDDEL-----KKNMKTDYLNNVKYIEENVTHINEII 643
Query: 88 RLDSTLMQNM-------SLGL-------------SQKVDLNGKKLTQSQMIDLEKQKKIL 127
L ++ Q + SL L +KV N KL + +LE + +
Sbjct: 644 LLKDSITQRIADIDELNSLNLININDFINEKNISQEKVSYNLNKLYKGSFEELESE--LS 701
Query: 128 ELKKTKQQLAISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEI 187
TK +N ++ N E K +N N++++ N+I + K E
Sbjct: 702 HFLDTKYLFHEKKSVNELQTILNTSNNECAKLNFMKSDNN----NNNNNSNIINLLKTE- 756
Query: 188 LKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIA 247
L L +K+N +++ L+ + EQ + N S+ Y I
Sbjct: 757 LSHLLSLKENIIKKLLN--------------------------HIEQNIQN-SSNKYTIT 789
Query: 248 IARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIY--GKQA 305
DI + + E++ S + Y + + +I L +Y K A
Sbjct: 790 YT---------DINNRMEDYKEEIE--------SLEVYKHTIGNIQKEYILHLYENDKNA 832
Query: 306 KLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNL----ESINKIIKQNEKIA 361
V + L +K ++N KNK +K+LKK + + ++L E ++K +K N I
Sbjct: 833 LAVHNTSMQILQYKDAIQNIKNKISD-DIKILKKYKEMNQDLLNYYEILDKKLKDNTYIK 891
Query: 362 QIYALDLKSNGDYNAYYN--------AFNDKITIQITQLETLSALNSTYLSLQNL 408
+++ L Y Y + FN+ L+ ++A+N LQ L
Sbjct: 892 EMHTASLVQITQYIPYEDKTISELEQEFNNNNQKLDNILQDINAMNLNINILQTL 946
>ref|NP_472967.1| (NC_000910) hypothetical protein [Plasmodium falciparum]
pir||G71620 hypothetical protein PFB0195c - malaria parasite (Plasmodium
falciparum)
gb|AAC71828.1| (AE001380) hypothetical protein [Plasmodium falciparum 3D7]
Length = 696
Score = 44.7 bits (104), Expect = 0.002
Identities = 74/324 (22%), Positives = 140/324 (42%), Gaps = 40/324 (12%)
Query: 82 NVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLM 141
N+ ++ + D+T + N+S G ++ +K ++L K K K K++ +
Sbjct: 222 NIVNYEQKDNTYIFNLSSGKNEMNRKTKQKFYLDDHVELAKNKI-----KNKEEAFVYK- 275
Query: 142 INGIENYKNQQEIELLKTAIKNL---ENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNN 198
N I N N+++I KT++ N E TLY + +E + + K N
Sbjct: 276 -NEIGNNYNERDI---KTSLNNFSIKEKTLY-----------CMENVEENDKRNKKNKRN 320
Query: 199 LEEALSASHYSMGELAF---KENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEK 255
++ + +Y EL K ++ I K FE ++ +E+HN YD I + DE+
Sbjct: 321 IKNKRNIKNYLKNELINIHKKGSKKNYINMKEFE-DKIKEIHNEYELKYDDIIKQYDEDD 379
Query: 256 SQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKES 315
+K L +++ +N+ K+ N + L L I + +++E +S
Sbjct: 380 IRKK-KLIDNIYMKYMNMKNELIKTQKEIINIKEENNKLKEELKITPE--RIIESNIVDS 436
Query: 316 LVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQIYALDLKSNGDYN 375
+K+++E T H LK+ K L++ L K I++ EK +I A+ + N +
Sbjct: 437 --YKNKLEEYIFLTRHKDLKIKK----LEEELNKEKKCIEEKEK--RISAISEQKNSLHK 488
Query: 376 AYYNAFNDKITIQITQLETLSALN 399
D + + +LE L +N
Sbjct: 489 MNILLKKDTMNFE-KKLENLRKIN 511
>gb|AAC14432.1| (AF059041) putative outer membrane pore protein [Helicobacter
pylori]
Length = 477
Score = 44.7 bits (104), Expect = 0.002
Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 235 ELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSK-----QYYNYDM 289
EL + TN + L +++ K+ T+AK FL +N + Y F+++ +Y +YD
Sbjct: 89 ELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNAS--YNFKNEARDTPEYKHYDT 146
Query: 290 FSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL----------LKK 339
+ + L ++ + V K++S ++S V N + + L++ L +
Sbjct: 147 QQLQAQVTLNVFNGFSD-VNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLAR 205
Query: 340 LETLQKNLESINKIIKQNEKIAQ--IYALD----LKSNGDYNAYYNAFNDKITIQITQLE 393
+ LQK LE I IK+ K+ + +D LK+ G+ + Y+ + + ++ +L
Sbjct: 206 MIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSE-YDILDMQFALEQNRL- 263
Query: 394 TLSALNSTYLSLQNLK 409
TL L T LS++NLK
Sbjct: 264 TLEYL--TNLSVKNLK 277
>dbj|BAA34954.1| (AB015484) myosin heavy chain [Dugesia japonica]
Length = 1958
Score = 44.3 bits (103), Expect = 0.003
Identities = 82/368 (22%), Positives = 154/368 (41%), Gaps = 67/368 (18%)
Query: 32 DLE--IQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRL 89
DLE +Q + +K+Q+I+ALQ+QI + QE+ ++K + +
Sbjct: 949 DLESSLQKAEQEKTAKDQQIKALQDQI---ARQEEEMNKMKKEKKAADELQKKTEESLQA 1005
Query: 90 DSTLMQNMSLG---LSQKVDLNGKKLTQSQMI--DLEKQKKILE--LKKTKQQLAISLMI 142
+ ++N++ L Q +D + L++ Q + D+EK K+ +E LK+T++ +
Sbjct: 1006 EEEKVKNLNKAKAKLEQTIDEMEENLSREQKVRADVEKVKRKIETELKQTQET------V 1059
Query: 143 NGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEA 202
+ +E K + E +L K E L A+ +A+L+ +L+ + LEE
Sbjct: 1060 DDLERVKRELEEQL-----KRKEMELSNASSKIEDESGLVAQLQKKIKELQARIQELEED 1114
Query: 203 LSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYD---IAIARLDEEKSQKD 259
L A + + ++L E EL +S + A+L+ K ++
Sbjct: 1115 LEAERQARAKAEKSRHQL------------EGELEELSDRLEEQGGATSAQLELNKKREA 1162
Query: 260 ITLAKKSFLEDVNVTG---VYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESL 316
L K LE+ N+ + R KQ + FS L +Q +K
Sbjct: 1163 ELLKLKRDLEEANMQHDQMIAQSRKKQQDVANEFSDQL--------------DQLQKA-- 1206
Query: 317 VFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKI-IKQNEKIAQIYALDLKSNGDYN 375
K+++E KN ++ + L LQ LE++NK ++KI ++ + + + G
Sbjct: 1207 --KAKIEKEKN-------EMKEDLNDLQSQLEALNKAKANSDKKIKELESQNAELQGKLE 1257
Query: 376 AYYNAFND 383
ND
Sbjct: 1258 ELNRHIND 1265
>pir||S03166 myosin heavy chain, gizzard smooth muscle [similarity] - chicken
emb|CAA29793.1| (X06546) MHC (AA 1-1979) [Gallus gallus]
Length = 1979
Score = 44.3 bits (103), Expect = 0.003
Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 59/303 (19%)
Query: 102 SQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQL------------AISLMINGIENYK 149
SQ++ KK+ Q QM+DLE+Q + E + K QL ++I +N K
Sbjct: 944 SQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1002
Query: 150 NQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLEILKSQLEIK 195
+E +LL+ + +L L + + S + + K E + +LE
Sbjct: 1003 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1062
Query: 196 KNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEK 255
K LE S H + EL + EL + K +E+EL A+ARL++E
Sbjct: 1063 KRKLEGESSDLHEQIAELQAQIAELKAQLAK-----KEEEL--------QAALARLEDET 1109
Query: 256 SQKDITLAK----KSFLEDV--NVTGVYYFRSKQ-------YYNYDMFSIALSIPLPIYG 302
SQK+ L K +S + D+ ++ R+K + L L
Sbjct: 1110 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1169
Query: 303 KQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQ 362
Q +L ++++E V K +E + +TH ++ E QK+ +++ ++ +Q E+ +
Sbjct: 1170 TQQELRAKREQEVTVLKRALEE-ETRTHEAQVQ-----EMRQKHTQAVEELTEQLEQFKR 1223
Query: 363 IYA 365
A
Sbjct: 1224 AKA 1226
>sp|Q90988|SCII_CHICK CHROMOSOME SCAFFOLD PROTEIN SCII
pir||A54817 ATPase ScII, chromosomal scaffold - chicken
emb|CAA56767.1| (X80792) chicken SCII [Gallus gallus]
Length = 1189
Score = 44.3 bits (103), Expect = 0.003
Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%)
Query: 29 LAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFR 88
L + E++S A+ L + A +Q + L + +K +++ + + + + ++
Sbjct: 715 LKQQWEMKSEEAELLQTKIQQSAYHKQQEDLLALKKTIAECEETLKKTEESQRKAEEEYK 774
Query: 89 LDSTLMQNMSL-------GLSQKVDLNGKKLTQSQMIDLEKQKKI----LELKKTKQQLA 137
M+N QK++ KK S EKQ+++ LEL++ KQ+ A
Sbjct: 775 ALENKMKNAEAERGKEIKNAQQKLNSAKKKADDSSRKMKEKQQEVEALVLELEQLKQEQA 834
Query: 138 --------ISLMINGIENYKNQQEIELLKT--AIKNLENTLYQANHSSSPNLIAIAKLEI 187
I ++ + E E +KT ++KN EN L SS L+ +I
Sbjct: 835 SYKQQSEAAQQAIASLKEQVSALEAEAVKTRESLKNAENEL-----SSEKGLMEERTKDI 889
Query: 188 LKSQLEIKK-----NNLEEALSASHYSMGELAFKENELLSIAPKNFEFNR----EQELHN 238
+I+K N L+ +++A + + + + + S K + + E+EL
Sbjct: 890 KAKSAKIEKYREQNNELQLSINALEHDINKYQQETADASSTLDKLLKEYKWIASEKELFG 949
Query: 239 ISATNYDIAIARLDEEKSQKDITLAKKSFLE-DVNVTGVYYFRSKQYYNYDMFSIALSIP 297
+ T YD E + L KK LE +N+ + + D+
Sbjct: 950 QADTTYDFEANNPKETGQKLQKLLTKKEKLEKSLNMRAMNLLSEAEERYNDLM------- 1002
Query: 298 LPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKK 339
K+ ++VE K + L E++ KNK H+A + + K
Sbjct: 1003 -----KKKRMVENDKIKILATIEELDRKKNKALHIAWEKVNK 1039
>sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle
Length = 1979
Score = 44.3 bits (103), Expect = 0.003
Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 59/303 (19%)
Query: 102 SQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQL------------AISLMINGIENYK 149
SQ++ KK+ Q QM+DLE+Q + E + K QL ++I +N K
Sbjct: 944 SQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1002
Query: 150 NQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLEILKSQLEIK 195
+E +LL+ + +L L + + S + + K E + +LE
Sbjct: 1003 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1062
Query: 196 KNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEK 255
K LE S H + EL + EL + K +E+EL A+ARL++E
Sbjct: 1063 KRKLEGESSDLHEQIAELQAQIAELKAQLAK-----KEEEL--------QAALARLEDET 1109
Query: 256 SQKDITLAK----KSFLEDV--NVTGVYYFRSKQ-------YYNYDMFSIALSIPLPIYG 302
SQK+ L K +S + D+ ++ R+K + L L
Sbjct: 1110 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1169
Query: 303 KQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQ 362
Q +L ++++E V K +E + +TH ++ E QK+ +++ ++ +Q E+ +
Sbjct: 1170 TQQELRAKREQEVTVLKRALEE-ETRTHEAQVQ-----EMRQKHTQAVEELTEQLEQFKR 1223
Query: 363 IYA 365
A
Sbjct: 1224 AKA 1226
>gb|AAK18803.1|AF305611_1 (AF305611) LMP1 [Borrelia burgdorferi]
Length = 849
Score = 43.9 bits (102), Expect = 0.003
Identities = 73/323 (22%), Positives = 126/323 (38%), Gaps = 53/323 (16%)
Query: 104 KVDLNGKK-----LTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIELLK 158
K +L+GK L SQ I+ +KQ L +K + + L Y N
Sbjct: 201 KKNLSGKSNSENILNNSQKIENDKQNTNLSKEKNSENI---LKTPDNSKYSNNNNT---- 253
Query: 159 TAIKNLENTLYQANHSSSPNLIAIAKL-----------------EILKSQLEIKKNNLEE 201
T++K + + + + S P+ I K+ +I ++ + KN L+E
Sbjct: 254 TSLKKIPSNSQKESELSPPSQTIIGKIYRPYSYLIKKELYEILDDINTGRVTLGKNRLKE 313
Query: 202 ----ALSASHYSMGELAFKE------NELLSIAPKNFEFNREQELHNISATNYDIAIARL 251
LS + EL N LL++ K+ E N L NI Y I +L
Sbjct: 314 LIKKGLSNKFQKVNELIENSKNKEASNLLLTLIKKDIEPN----LINIPKDPYKKEIFQL 369
Query: 252 DEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQK 311
D+E KS + + + +S+Q D+ + P + +K + Q
Sbjct: 370 DKEDKNPQHPGDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPND--AQASKTLAQA 427
Query: 312 KKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKIAQ---IYALDL 368
K +E+ K+K H + L+ ++ Q+ ++ +N+ +K N AQ A
Sbjct: 428 NKIQ-----HLEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQAY 482
Query: 369 KSNGDYNAYYNAFNDKITIQITQ 391
++NGD NA+ I + TQ
Sbjct: 483 ENNGDLLKAENAYEKIIKLTNTQ 505
>gb|AAB95253.1| (U91585) myosin heavy chain [Girardia tigrina]
Length = 431
Score = 43.9 bits (102), Expect = 0.003
Identities = 78/351 (22%), Positives = 150/351 (42%), Gaps = 37/351 (10%)
Query: 30 AKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDF-FR 88
AKD +I+S + + +++ ++++ A +K K + +L N++ +
Sbjct: 53 AKDQQIKSLQDQMARQEEEMNKMKKEKKAADELQK---KTEESLLAEEEKVKNLNKVKAK 109
Query: 89 LDSTLMQ-NMSLGLSQKVDLNGKKL----------TQSQMIDLEKQKKILELKKTKQQLA 137
L+ T+ + +L QK+ + +K+ T + DLE+ K+ LE + ++++
Sbjct: 110 LEQTIDEMEENLSREQKIRADVEKVKRKIEGELKQTPETVDDLERVKRELEEQLKRKEME 169
Query: 138 ISLMINGIENYKN-----QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQL 192
+S + IE+ Q++I L+ I+ LE L + S A L+++L
Sbjct: 170 LSSASSKIEDESGLVAQLQKKIRELQARIQELEEDLEAERQARSK---AEKSRHQLEAEL 226
Query: 193 EIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFN--REQELHNISATNYDIA--- 247
E + LEE A+ MG +E EL+ + E N +Q + D
Sbjct: 227 EELSDRLEEQGGATSAQMGLNKKREAELIELKRDLEEANVQHDQSVAQARKKQQDAVNEF 286
Query: 248 IARLDEEKSQKDITLAKKSFL-EDVN-VTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQA 305
+LD+ + K T +K+ L ED+N G +K +N D L Q
Sbjct: 287 SEQLDQLQKAKAKTEKEKNELKEDLNDFHGQLESLNKAKFNSDK-------RLKDLEAQN 339
Query: 306 KLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQ 356
++ K E+ ++ NT K+ L +L +LE + + +NK+ +Q
Sbjct: 340 SDLQGKLDETNRHLNDASNTSGKSQQLNAELQARLEEAEFQINQLNKVKQQ 390
>ref|XP_147228.1| (XM_147228) myosin heavy chain 11, smooth muscle [Mus musculus]
Length = 1938
Score = 43.5 bits (101), Expect = 0.005
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 46/265 (17%)
Query: 32 DLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFR-LD 90
+ E++ K+ ++ LQEQ+ A + ++ ++ + + L + + ++
Sbjct: 872 ETELKELEQKHTQLAEEKTLLQEQLQA---ETELYAEAEEMRVRLAAKKQELEEILHEME 928
Query: 91 STLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQ-------KKILELKKTKQQLAI----- 138
+ L + G Q++ KK+ Q QM+DLE+Q ++ L+L+K + I
Sbjct: 929 ARLEEEEDRG--QQLQAERKKMAQ-QMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLED 985
Query: 139 SLMINGIENYKNQQEIELLKTAIKNLENTL------------YQANHSS--SPNLIAIAK 184
+++ +N K +E +LL+ + +L L ++ H S S + + K
Sbjct: 986 DILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKK 1045
Query: 185 LEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNY 244
E + +LE K LE S H + +L + EL K +E+EL
Sbjct: 1046 EEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAK-----KEEEL-------- 1092
Query: 245 DIAIARLDEEKSQKDITLAKKSFLE 269
A+ARLDEE +QK+ L K LE
Sbjct: 1093 QAALARLDEEIAQKNNALKKIRELE 1117
>ref|NP_077971.1| (NC_002162) p115 protein [Ureaplasma urealyticum]
pir||C82930 p115 protein UU140 [imported] - Ureaplasma urealyticum
gb|AAF30546.1|AE002114_13 (AE002114) p115 protein [Ureaplasma urealyticum]
Length = 981
Score = 43.5 bits (101), Expect = 0.005
Identities = 93/413 (22%), Positives = 171/413 (40%), Gaps = 68/413 (16%)
Query: 22 LLLFSLGLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEK----VVSKWDNPILYLG 77
L L SL + + + + + SKN K + L+EQ + E+ ++ + G
Sbjct: 362 LELESLKTKQKNNLDTIIWEIASKNLKKEMLEEQFKRQTENERGVKTIIDSQKALVGVYG 421
Query: 78 YNNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLA 137
N+S + + ++ G++ + N + + I LKK +A
Sbjct: 422 TVAQNISTKTEHELAISTALAKGINNIIVKNNQ----------AAENCINFLKKNNAGVA 471
Query: 138 ISLMINGIENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKN 197
L I ++ + E +K LE + AN N+ ++ L I N
Sbjct: 472 TFLPIENLQAKSIKPE---FYDVLKELEGFVGVANELVKINVNYKISIDYLLGN-TIIAN 527
Query: 198 NLEEALSASHYSM---------GELAFKENELL--SIAPKNFEFNREQELHNISATNYDI 246
NL+ A+ S Y+ G++ F + S + KN N E+++ + D+
Sbjct: 528 NLKNAIILSEYTYKNYKVVSLEGDIVFGGGAISGGSNSKKNIILNLEEKIKEL-----DL 582
Query: 247 AIARLDEEKSQKD--ITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSI-----ALSIPLP 299
I +L+EE+ + + KK + E Y+ S+Q N + ++ +LS L
Sbjct: 583 KIKKLNEEQIELNNLHNQTKKQWQE--------YYNSEQIINGILNNLITTNNSLSDNLN 634
Query: 300 IYGKQAKLVEQKK--KESLVFK-SEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQ 356
Y Q + + K KE + K S+ N NK + + L +K++TL+ NL + N + +
Sbjct: 635 NYKSQYEALSATKLSKEEIESKISDNWNEYNKKKNELINLKQKIQTLKANLNTAN--LNK 692
Query: 357 NEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLK 409
NE L++ N + +YN DK IT E S +++ S+QN++
Sbjct: 693 NE-------LEITYNKELEDFYNL--DK---NITSCE--SNIDNLNYSIQNVQ 731
>ref|NP_055450.1| (NM_014635) KIAA0336 gene product [Homo sapiens]
dbj|BAA20794.1| (AB002334) KIAA0336 [Homo sapiens]
Length = 1583
Score = 43.5 bits (101), Expect = 0.005
Identities = 81/369 (21%), Positives = 156/369 (41%), Gaps = 87/369 (23%)
Query: 46 NQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDSTLMQNMSLGLSQKV 105
N+++Q+L+EQ +K +S+ N +SD + TLM + GL ++
Sbjct: 322 NREVQSLKEQ------HQKEISE---------LNETFLSDSEKEKLTLMFEIQ-GLKEQC 365
Query: 106 DLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIEL------LKT 159
+ N ++ Q +++ E ++I+E+ +T+ + + E+ K QQ ++ L+T
Sbjct: 366 E-NLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRT 424
Query: 160 A---------------------------IKNLENTLYQANHSSSPNLIAIAKLEILKSQL 192
A + LENT+ + L+++++ + + +L
Sbjct: 425 AFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKEL 484
Query: 193 EIKKNNLEE-------ALSASHYSMGELAFK----ENELLSIAPK---NFEFNREQELHN 238
E K N+L E L SH M K E +L + K ++N E E
Sbjct: 485 EGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKV 544
Query: 239 ISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPL 298
T L+E +KD K LE + V K+ + ++ S
Sbjct: 545 NELT------GGLEETLKEKDQNDQK---LEKLMVQMKVLSEDKEVLSAEVKS------- 588
Query: 299 PIYGKQAKLVEQKKKESL---VFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIK 355
+Y + KL +KK+ S VF S+ E+ K H +L KKL+ + + +++NK++
Sbjct: 589 -LYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEH--ITQLEKKLQLMVEEQDNLNKLL- 644
Query: 356 QNEKIAQIY 364
+NE++ +++
Sbjct: 645 ENEQVQKLF 653
>gb|AAH26142.1| (BC026142) Unknown (protein for MGC:13920) [Mus musculus]
Length = 1972
Score = 43.5 bits (101), Expect = 0.005
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 46/265 (17%)
Query: 32 DLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFR-LD 90
+ E++ K+ ++ LQEQ+ A + ++ ++ + + L + + ++
Sbjct: 872 ETELKELEQKHTQLAEEKTLLQEQLQA---ETELYAEAEEMRVRLAAKKQELEEILHEME 928
Query: 91 STLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQ-------KKILELKKTKQQLAI----- 138
+ L + G Q++ KK+ Q QM+DLE+Q ++ L+L+K + I
Sbjct: 929 ARLEEEEDRG--QQLQAERKKMAQ-QMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLED 985
Query: 139 SLMINGIENYKNQQEIELLKTAIKNLENTL------------YQANHSS--SPNLIAIAK 184
+++ +N K +E +LL+ + +L L ++ H S S + + K
Sbjct: 986 DILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKK 1045
Query: 185 LEILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNY 244
E + +LE K LE S H + +L + EL K +E+EL
Sbjct: 1046 EEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAK-----KEEEL-------- 1092
Query: 245 DIAIARLDEEKSQKDITLAKKSFLE 269
A+ARLDEE +QK+ L K LE
Sbjct: 1093 QAALARLDEEITQKNNALKKIRELE 1117
>pir||I51302 myosin heavy chain - chicken (fragment)
gb|AAB34772.2| (S78540) myosin heavy chain; AMHC1 [Gallus gallus]
Length = 764
Score = 43.5 bits (101), Expect = 0.005
Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 63/336 (18%)
Query: 47 QKIQALQEQIDAL----SSQEKVVSKWDNPI--LYLGYNNANVSDFFRLDSTLMQNMSLG 100
Q++Q +E ++A+ SS EK + N + L +N + LD +N
Sbjct: 224 QRLQEAEEAVEAVNAKCSSLEKTKHRLQNEVEDLMADVERSNAAAA-ALDKK-QRNFDKI 281
Query: 101 LS---QKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQQEIELL 157
LS QK + + +L SQ ++ +LKK+ ++L + +E
Sbjct: 282 LSEWKQKFEESQTELEASQKEARSLSTELFKLKKSYEEL--------------MEHLETF 327
Query: 158 KTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFKE 217
K KNL+ + +I +LE ++ QL+ +K LE AL + S+ E
Sbjct: 328 KRENKNLQEEISGLTEQLGVQQKSIHELEKVRKQLDREKLELEAALEEAEASL------E 381
Query: 218 NELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVY 277
+E I EFN+ + +YD +A DEE Q
Sbjct: 382 HEEGKILKAQLEFNQVK-------ADYDRKLAEKDEEIEQ-------------------- 414
Query: 278 YFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVE-NTKNKTHHLALKL 336
SK++ + S+ S+ + L +KK E + + E++ + N+T A K
Sbjct: 415 ---SKRHKLRVVDSLQTSLDAETRNRNEALRLKKKMEGDLNEMEIQLSHANRTAAEAQKK 471
Query: 337 LKKLE-TLQKNLESINKIIKQNEKIAQIYALDLKSN 371
LK L+ T+ + ++ +++ NE + + A+ + N
Sbjct: 472 LKALQATISRTQLQLDDVVRANEDLKENIAIVERRN 507
>dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japonica]
Length = 1743
Score = 43.1 bits (100), Expect = 0.006
Identities = 66/343 (19%), Positives = 151/343 (43%), Gaps = 35/343 (10%)
Query: 28 GLAKDLEIQSFVAKYLSKNQKIQALQEQIDALSSQ----EKVVSKWDNPI--LYLGYNNA 81
G + E++ F K N +IQ L+E+ ++ S+ EKV S+ I L + A
Sbjct: 1170 GGVRSEEMEEFKRKM---NARIQELEEESESNKSKCSQLEKVKSRLQGEIEDLLIDVERA 1226
Query: 82 NVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLM 141
N ++ ++ G+ + + KK ++SQ Q+ + L++++ A
Sbjct: 1227 NGL------ASQLEKKQKGVDKLIGEWQKKYSESQ------QELEVSLRESRTVSAEVFK 1274
Query: 142 INGI-ENYKNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLE 200
+ + EN +Q +IE LK KNL + ++ + ++E + ++EI+++ L+
Sbjct: 1275 LKSVLEN--SQDQIESLKRENKNLSDEIHDLTEQLGEGGRNVHEIEKARKRIEIERDELQ 1332
Query: 201 EALSASHYSMGELAFKENELLS-IAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKD 259
AL + E A ++ E S A R++ I+ + + R + ++S +
Sbjct: 1333 HALEEA-----ESALEQEEAKSQRAQLEISQARQEAERRIAEKEEEFEVTRKNHQRSLES 1387
Query: 260 ITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFK 319
+ + ++ E T + K ++ + + L + +Q K ++ +++ L +
Sbjct: 1388 MQASLEA--EVRGRTEAMKMKKKLEHDINELEVGLDTANRLKSEQEKNSKKYQQQLLEMQ 1445
Query: 320 SEVENTKNKTHHLALKLL---KKLETLQKNLESINKIIKQNEK 359
++V+ ++ ++ +L+ +KL + LE + + EK
Sbjct: 1446 AQVDEQHHQRELVSEQLVLAERKLTMMNGELEEVRNMCDHAEK 1488
>ref|NP_071582.1| (NM_022246) RAD50 homolog (S. cerevisiae) [Rattus norvegicus]
gb|AAF91229.1|AF218576_1 (AF218576) Rad50 [Rattus norvegicus]
Length = 1312
Score = 43.1 bits (100), Expect = 0.006
Identities = 54/259 (20%), Positives = 120/259 (45%), Gaps = 43/259 (16%)
Query: 101 LSQKVDLNGKKLTQSQMIDLEKQK-KILELKKTKQQLAISLMINGIENYKNQQEIELLKT 159
+S K++LN +KL Q Q ++ K K ELK K Q+A +L + +++ L T
Sbjct: 842 VSSKIELN-RKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQ----RRQQMEEQTVELST 896
Query: 160 AIKNLENTLYQANHSSSPNLIAIAKLEILKSQL-----------EIKKNNLEEALSASHY 208
+++L + A +P IA+ KL+ K +L + K N+++E + H
Sbjct: 897 EVQSLNREIKDAKEQINPLEIALEKLQQEKEELIHRKNTSNKMAQDKINDIKEKVKNIHG 956
Query: 209 SMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDE-EKSQKDITLAKKSF 267
M ++ + +++ +E EL+ + + +L+E +K ++ I +
Sbjct: 957 YMKDI----ENYIQDGKDDYKKQKETELNEV--------VIQLNECDKHKEKINKEMGTM 1004
Query: 268 LEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKN 327
+D++ + ++ + D ++ L ++ K VE+++K+ L +++ +
Sbjct: 1005 RQDIDTKKI-----QERWLQD------NLTLRKRREELKEVEEERKQHLKEMGQMQVLQM 1053
Query: 328 KTHHLALKLLKKLETLQKN 346
K H KL + ++T+++N
Sbjct: 1054 KNEH--QKLEENIDTIKRN 1070
>pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni) (strain Brazilian
LE)
gb|AAA29905.1| (L01634) myosin heavy chain [Schistosoma mansoni]
Length = 1940
Score = 43.1 bits (100), Expect = 0.006
Identities = 93/419 (22%), Positives = 170/419 (40%), Gaps = 62/419 (14%)
Query: 31 KDLEIQSFVAKYLSKNQKIQALQEQIDALSSQEK----VVSKWDNPILYLGYNNANVSDF 86
KD +I++ ++ +++ I L + L Q K + ++ + +L A
Sbjct: 957 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLEEQNKRTQEALQAEEDKVNHLNKLKA----- 1011
Query: 87 FRLDSTLMQNMSLGLSQKVDLNGK------------KLTQSQMIDLEKQKKILELKKTKQ 134
+L+STL M L+++ + G K TQ + DLE+ K+ LE + ++
Sbjct: 1012 -KLESTL-DEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRK 1069
Query: 135 QLAISLMINGIENYKN-----QQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILK 189
+ I + E+ + Q++I+ L+T I+ LE L + S A + L+
Sbjct: 1070 EAEIGGLSGKFEDEQGLVAQLQRKIKELQTRIQELEEDLEAERAARSK---AEKSRQQLE 1126
Query: 190 SQLEIKKNNLEEALSASHYSMGELAFKENELLSIAP--KNFEFNREQELHNISATNYDIA 247
S+LE + LEE A+ +E EL+ + ++ EQ + + D A
Sbjct: 1127 SELEEVVDRLEEQDGATAAQSDLTKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSD-A 1185
Query: 248 IARLDEEKSQKDITLAK--------KSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLP 299
I L ++ Q + AK K+ L+D + ++K N + AL
Sbjct: 1186 INELADQLDQANKAKAKAEKERSQFKAELDDAHNQVDSIMKAK--LNSEKTVKALE---- 1239
Query: 300 IYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQ--- 356
Q + V K E+ +E +TK ++ +L ++LE + L +NKI +Q
Sbjct: 1240 ---SQLQEVSVKLDEATRNLNEQASTKARSSQEVSELQRQLEEAESQLSQLNKIKQQLSA 1296
Query: 357 -----NEKIAQIYALDLKSNGDYNAYYNAFNDKITIQITQLETLSALNSTYLSLQNLKG 410
+ + K NG+ N +D +++ T E SA LQ L+G
Sbjct: 1297 QLEEARHSLEDESRMKAKLNGEVR---NLTSDLDSLRETLEEEQSAKGDLQRQLQKLQG 1352
>ref|NP_223270.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71918 hypothetical protein jhp0552 - Helicobacter pylori (strain J99)
gb|AAD06124.1| (AE001487) putative [Helicobacter pylori J99]
Length = 477
Score = 42.7 bits (99), Expect = 0.008
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 235 ELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSK-----QYYNYDM 289
EL + TN + L +++ K+ T+AK FL +N + Y F+++ +Y +Y+
Sbjct: 89 ELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNAS--YNFKNEARDTPEYKHYNT 146
Query: 290 FSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL----------LKK 339
+ + L ++ + V K++S ++S V N + + L++ L +
Sbjct: 147 QQLQAQVTLNVFNGFSN-VNNVKEKSATYRSTVANLEYSRQSVYLQVVQQYYEYFNNLAR 205
Query: 340 LETLQKNLESINKIIKQNEKIAQ--IYALD----LKSNGDYNAYYNAFNDKITIQITQLE 393
+ LQK LE I IK+ K+ + +D LK+ G+ + Y+ + + ++ +L
Sbjct: 206 MIALQKKLEQIQTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSE-YDILDMQFALEQNRL- 263
Query: 394 TLSALNSTYLSLQNLK 409
TL L T LS++NLK
Sbjct: 264 TLEYL--TNLSVKNLK 277
>ref|NP_207400.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64595 hypothetical protein HP0605 - Helicobacter pylori (strain 26695)
gb|AAD07673.1| (AE000574) H. pylori predicted coding region HP0605 [Helicobacter
pylori 26695]
Length = 477
Score = 42.7 bits (99), Expect = 0.008
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 235 ELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSK-----QYYNYDM 289
EL + TN + L +++ K+ T+AK FL +N + Y F+++ +Y +Y+
Sbjct: 89 ELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNAS--YNFKNEARDTPEYKHYNT 146
Query: 290 FSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL----------LKK 339
+ + L ++ + V K++S ++S V N + + L++ L +
Sbjct: 147 QQLQAQVTLNVFNGFSD-VNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLAR 205
Query: 340 LETLQKNLESINKIIKQNEKIAQ--IYALD----LKSNGDYNAYYNAFNDKITIQITQLE 393
+ LQK LE I IK+ K+ + +D LK+ G+ + Y+ + + ++ +L
Sbjct: 206 MIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSE-YDILDMQFALEQNRL- 263
Query: 394 TLSALNSTYLSLQNLK 409
TL L T LS++NLK
Sbjct: 264 TLEYL--TNLSVKNLK 277
>gb|AAK15626.1|AF323443_1 (AF323443) 235 kDa rhoptry protein [Plasmodium yoelii yoelii]
Length = 2747
Score = 42.7 bits (99), Expect = 0.008
Identities = 68/371 (18%), Positives = 147/371 (39%), Gaps = 58/371 (15%)
Query: 32 DLEIQSFVAKYLSKNQKIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDS 91
+L I + K ++++ L+E +++L Q+K + L N+ + +
Sbjct: 1619 NLSIDTQETKLTENGKQLKTLEELLESLKKQKKNIEDQKKE---LDEVNSKIKNIENTVB 1675
Query: 92 TLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLAISLMINGIENYKNQ 151
+N +G+ +K++ ++ ++ +E K+++ K T Q + S +E +
Sbjct: 1676 QHKKNYEIGIVEKIN----EIAKTNKNXIESTKELI--KPTIQHIISSFNAXDLEGIDSD 1729
Query: 152 QEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMG 211
+ + T N+ ++ + + L ++K I +Q++ K+ + ++ L + ++
Sbjct: 1730 ENLGKXXTEXGNIYEEFIKSYNLITNYLETVSKESITYNQIQNKRIDTQKELLKNIENVN 1789
Query: 212 ELA-----FKENELLSIAPK--------NFEFNREQELHNISATNYDIAIARL----DEE 254
+ KENE I N F E N N +I + DE
Sbjct: 1790 KAKSYLDYIKENEFDRIVTHFKKKLNTVNDNFKNEXSKVNEGFDNISNSINTVKNSTDEN 1849
Query: 255 KSQKDITLAKKSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKL------- 307
+ K+ + VN T YY Y Y+ +I +IP K+
Sbjct: 1850 SLLNILNQTKEMYANIVNNT--YYS-----YKYEAENIFRNIPKLANTLNIKIKNSSGID 1902
Query: 308 ------------VEQKKKESLVF------KSEVENTKNKTHHLALKLLKKLETLQKNLES 349
++ K +++L+F K+E + ++ + L +LKK + LQK +
Sbjct: 1903 LFKDIKIAILSYLDSKTEDTLIFIPSPQKKTETYTKISDSYSILLDILKKSQELQKKEQQ 1962
Query: 350 INKIIKQNEKI 360
K+I +N ++
Sbjct: 1963 TLKLIFENRRL 1973
>ref|NP_186943.1| (NM_111163) unknown protein [Arabidopsis thaliana]
gb|AAF26966.1|AC018363_11 (AC018363) unknown protein [Arabidopsis thaliana]
Length = 806
Score = 42.7 bits (99), Expect = 0.008
Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 28/255 (10%)
Query: 29 LAKDLE-IQSFVAKYLSKNQKIQALQEQIDALSSQEKVV----SKWDNPILYLGYNNANV 83
L +DLE +S AK I+ L ++A E +W N L
Sbjct: 266 LKRDLENARSLEAKVKELEMIIEQLNVDLEAAKMAESYAHGFADEWQNKAKELEKRLEEA 325
Query: 84 SDFFRLDSTLMQNMSLGLSQKVDLNGKKL--TQSQMIDLEKQKKILELKKTKQQLAIS-- 139
+ + S + + ++++++++ +L +S++ DL+++ ++LE+ Q++ +
Sbjct: 326 NKLEKCASVSL----VSVTKQLEVSNSRLHDMESEITDLKEKIELLEMTVASQKVDLEKS 381
Query: 140 ---LMINGIENYKNQQEIELLKTAIKNLENTLYQANH------SSSPNLIA-----IAKL 185
L I E+ K+++E E LK ++ + QA SS L+ +++L
Sbjct: 382 EQKLGIAEEESSKSEKEAEKLKNELETVNEEKTQALKKEQDATSSVQRLLEEKKKILSEL 441
Query: 186 EILKSQLEIKKNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYD 245
E K + E K +E SA H E + +LLS +N+E E I ATN
Sbjct: 442 ESSKEEEEKSKKAMESLASALHEVSSESRELKEKLLSRGDQNYETQIEDLKLVIKATNNK 501
Query: 246 IAIARLDEEKSQKDI 260
LDE + + D+
Sbjct: 502 YE-NMLDEARHEIDV 515
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fra>
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fra>
Length = 1184
Score = 42.7 bits (99), Expect = 0.008
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 40/194 (20%)
Query: 102 SQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQL------------AISLMINGIENYK 149
SQ++ KK+ Q QM+DLE+Q + E + K QL ++I +N K
Sbjct: 943 SQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 150 NQQEIELLKTAIKNLENTLYQANHSS--------------SPNLIAIAKLEILKSQLEIK 195
+E +LL+ + +L L + + S + + K E + +LE
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 196 KNNLEEALSASHYSMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEK 255
K LE S H + EL + EL + K +E+EL A+ARL++E
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAK-----KEEEL--------QAALARLEDET 1108
Query: 256 SQKDITLAKKSFLE 269
SQK+ L K LE
Sbjct: 1109 SQKNNALKKIRELE 1122
>ref|XP_109181.1| (XM_109181) RAD50 homolog (S. cerevisiae) [Mus musculus]
ref|XP_122252.1| (XM_122252) similar to RAD50 homolog (S. cerevisiae) [Mus musculus]
Length = 1312
Score = 42.7 bits (99), Expect = 0.008
Identities = 49/191 (25%), Positives = 85/191 (43%), Gaps = 31/191 (16%)
Query: 101 LSQKVDLNGKKLTQSQMIDLEKQK-KILELKKTKQQLAISLMINGIENYKNQQEIELLKT 159
++ K++LN +KL Q Q ++ K K ELK K Q+A +L +Q +E L T
Sbjct: 842 VTSKIELN-RKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQ---RRQQMEEQSVE-LST 896
Query: 160 AIKNLENTLYQANHSSSPNLIAIAKLEILKSQL-----------EIKKNNLEEALSASHY 208
+++L + A SP A+ KL+ K +L + K N+++E + H
Sbjct: 897 EVQSLNREIKDAKEQISPLETALEKLQQEKEELIHRKHTSNKMAQDKINDIKEKVKNIHG 956
Query: 209 SMGEL------------AFKENELLSIAPK--NFEFNREQELHNISATNYDIAIARLDEE 254
M ++ KE EL +A + E +RE+ ++ DI ++ E
Sbjct: 957 YMKDIENYIQDGKDDYKKQKETELNGVAVQLNECEKHREKINKDMGTMRQDIDTQKIQER 1016
Query: 255 KSQKDITLAKK 265
Q ++TL K+
Sbjct: 1017 WLQDNLTLRKR 1027
>gb|AAK15625.1|AF323442_1 (AF323442) 235 kDa rhoptry protein [Plasmodium yoelii yoelii]
Length = 2752
Score = 42.7 bits (99), Expect = 0.008
Identities = 56/280 (20%), Positives = 117/280 (41%), Gaps = 23/280 (8%)
Query: 149 KNQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHY 208
KN++ E K + L N Y + + I +I+K E N + ++ S
Sbjct: 1495 KNKELFEKYKQDVTVLLNKYYAVELKNKFDKTKIDSEQIIKEIKEAHTNCISQS-GKSEQ 1553
Query: 209 SMGELAFKENELLSIAPKNFEFNREQELHNISATNYDIAIARLDEEKSQKDITLAKKSFL 268
M E+ ++ + N + N+ +S ++ ++++ K + D L + +
Sbjct: 1554 KMNEIKNEKIHIEDEVANNDKSNKAILNIKLSVDQFETKFIKINDIKKKSDECLKETENI 1613
Query: 269 ED-VNVTGVYYFRSKQYYNYDMFSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKN 327
E+ ++ + ++ N ++F L L Q K ++ +KKE S++EN ++
Sbjct: 1614 ENKISTLSIDTQETRLKENGEIFG-TLKKFLESLKNQKKNIDDQKKELDGVNSKIENIES 1672
Query: 328 KTH----HLALKLLKKLETLQK----NLESINKII-------KQNEKIAQIYALDLKSN- 371
+ + + +++K+ + K +ES K+I + K + +D N
Sbjct: 1673 NVNQHKKNYEIGIVEKINEIAKANKDQIESTKKLIIPTIENLTSSFKTNDLGGIDTXENL 1732
Query: 372 GDYNA----YYNAFNDKITIQITQLETLSALNSTYLSLQN 407
G YN YN F + + + LET+S + TY ++N
Sbjct: 1733 GTYNKEMNKTYNEFMESYNLIVDYLETVSKESITYGEIKN 1772
>ref|NP_282181.1| (NC_002163) putative outer membrane component of efflux system
[Campylobacter jejuni]
pir||D81305 probable outer membrane component of efflux system Cj1031
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73287.1| (AL139077) putative outer membrane component of efflux system
[Campylobacter jejuni]
Length = 424
Score = 42.7 bits (99), Expect = 0.008
Identities = 79/392 (20%), Positives = 159/392 (40%), Gaps = 47/392 (11%)
Query: 36 QSFVAKYLSKNQ----KIQALQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDS 91
+S++ K + Q K QA + + +LS V AN D F +D
Sbjct: 35 ESYLIKQMQSEQANLDKEQAFRNYLPSLSLNSAYV--------------ANNKDRFIIDP 80
Query: 92 TLMQNMSLGLSQKVDLNGKKLTQSQMIDLEKQKKILELKKTKQQLA---ISLMINGIENY 148
+ L+ + G + + ++ ++ +L+ ++ K LA I+L N +
Sbjct: 81 QESLFAKVSLNFLLFDGGAREANLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLE 140
Query: 149 K----NQQEIELLKTAIKNLENTLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALS 204
K NQQ++ LK+ + L+ Y A S L +I K + S LE+ +N L+
Sbjct: 141 KILLANQQKVSFLKSTFERLQK-FYDAGLSPKDELESI-KAKYHLSLLELSQNELK---- 194
Query: 205 ASHYSMGELAFKENELLSIAPKNFEFNREQELHNIS---ATNYDIAIARLDEEKSQKDIT 261
LA + E+ ++ +F+ L N + NY++ IA+ +++ +
Sbjct: 195 --------LANIQKEIKILSDTDFKVQGNAFLENPQQEKSQNYEVMIAKEQINLAKESVN 246
Query: 262 LAKKSFLEDVNVTGVYYFRSKQYYNYDM---FSIALSIPLPIYGKQAKLVEQKKKESLVF 318
LAK + + + F K YN + F+ L Y + + + + + F
Sbjct: 247 LAKAEYFPKFYIQDNFNF-YKNNYNPKVPAPFANLADQFLEKYSQGNQFILGMEWKIFDF 305
Query: 319 KSEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQNEKI-AQIYALDLKSNGDYNAY 377
+ + + + ++ + + +KN E +N + K + + QI AL+L N A+
Sbjct: 306 NARAKEVEKERLNVQIANANARFSERKNKEELNYLDKSLKVLQEQILALNLSLNAANLAF 365
Query: 378 YNAFNDKITIQITQLETLSALNSTYLSLQNLK 409
+ ++ +E L AL + + +L+
Sbjct: 366 ESVDKKYQAGLVSYVEYLQALEVKFKAQSDLE 397
>ref|NP_033038.1| (NM_009012) RAD50 homolog (S. cerevisiae) [Mus musculus]
pir||T30845 probable DNA repair protein RAD50 - mouse
gb|AAC52894.1| (U66887) RAD50 [Mus musculus]
Length = 1312
Score = 42.7 bits (99), Expect = 0.008
Identities = 49/191 (25%), Positives = 85/191 (43%), Gaps = 31/191 (16%)
Query: 101 LSQKVDLNGKKLTQSQMIDLEKQK-KILELKKTKQQLAISLMINGIENYKNQQEIELLKT 159
++ K++LN +KL Q Q ++ K K ELK K Q+A +L +Q +E L T
Sbjct: 842 VTSKIELN-RKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQ---RRQQMEEQSVE-LST 896
Query: 160 AIKNLENTLYQANHSSSPNLIAIAKLEILKSQL-----------EIKKNNLEEALSASHY 208
+++L + A SP A+ KL+ K +L + K N+++E + H
Sbjct: 897 EVQSLNREIKDAKEQISPLETALEKLQQEKEELIHRKHTSNKMAQDKINDIKEKVKNIHG 956
Query: 209 SMGEL------------AFKENELLSIAPK--NFEFNREQELHNISATNYDIAIARLDEE 254
M ++ KE EL +A + E +RE+ ++ DI ++ E
Sbjct: 957 YMKDIENYIQDGKDDYKKQKETELNGVAVQLNECEKHREKINKDMGTMRQDIDTQKIQER 1016
Query: 255 KSQKDITLAKK 265
Q ++TL K+
Sbjct: 1017 WLQDNLTLRKR 1027
>ref|NP_326501.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13843.1| (AL445565) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 647
Score = 42.7 bits (99), Expect = 0.008
Identities = 41/143 (28%), Positives = 72/143 (49%), Gaps = 15/143 (10%)
Query: 43 LSKNQKIQA------LQEQIDALSSQEKVVSKWDNPILYLGYNNANVSDFFRLDSTL--M 94
++K QKIQ L+E+++ SSQ+ +K N IL N N+S +F L S++
Sbjct: 421 ITKGQKIQINGFYSNLKEKVELFSSQDLFKNKPVNDILPSELTNENLSSYFELSSSIDNF 480
Query: 95 QNMSLGLSQKVDLNGKKL---TQSQMIDLEKQKKILELK-KTKQQLAISLMINGIENYKN 150
+N SL L +K + N L T ++ + K + +K + K+ + +S + IE++ N
Sbjct: 481 KNYSLELYRKQEDNSFVLNDKTGEALVQVVLSKNVNGIKQQAKKAIKLSNLKMSIEHFNN 540
Query: 151 --QQEIELLK-TAIKNLENTLYQ 170
+ L+K KNL N ++
Sbjct: 541 LIDKNTNLVKLKENKNLSNISFE 563
>ref|NP_195065.1| (NM_119493) putative protein [Arabidopsis thaliana]
pir||T05990 hypothetical protein F17M5.150 - Arabidopsis thaliana
emb|CAB38797.1| (AL035678) putative protein [Arabidopsis thaliana]
emb|CAB80056.1| (AL161583) putative protein [Arabidopsis thaliana]
Length = 779
Score = 42.7 bits (99), Expect = 0.008
Identities = 59/277 (21%), Positives = 119/277 (42%), Gaps = 49/277 (17%)
Query: 114 QSQMIDLEKQKKILELKKTK---QQLAISLMINGIENYKNQQEIELLKTAIKNLEN---- 166
+S+M+++ K + EL+ TK ++L ++L E + +Q+ EL K ++ +E
Sbjct: 209 KSEMVEMSKMLAVEELESTKRLIEELKLNLEKAETEEQQAKQDSELAKLRVQEMEQGIAD 268
Query: 167 ----------TLYQANHSSSPNLIAIAKLEILKSQLEIKKNNLEEALSASHYSMGELAFK 216
+ QA H+S AI++LE +K +L+ +N + + +LA K
Sbjct: 269 EASVASKAQLEVAQARHTS-----AISELESVKEELQTLQNEYDALVKEK-----DLAVK 318
Query: 217 ENELLSIAPKNFEFNREQELHNISATNYDIAIA---RLDEEKSQKDITLAK--------- 264
E E IA K E E+ + AT + A L+ E+ + + +
Sbjct: 319 EAEEAVIASKEVERKVEELTIELIATKESLECAHSSHLEAEEHRIGAAMLRDQETHRWEK 378
Query: 265 --KSFLEDVNVTGVYYFRSKQYYNYDMFSIALSIPLP---IYGKQAKLVEQKKKESLVFK 319
K E++ + +K+ F+ AL + L K++ V+++ E++V
Sbjct: 379 ELKQAEEELQRLKQHLVSTKELQVKLEFASALLLDLKKELADHKESSKVKEETSETVVTN 438
Query: 320 SEVENTKNKTHHLALKLLKKLETLQKNLESINKIIKQ 356
E+ + T + K + + +K LE +N +++
Sbjct: 439 IEISLQEKTT-----DIQKAVASAKKELEEVNANVEK 470
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.313 0.130 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,793,340
Number of Sequences: 1026957
Number of extensions: 8586565
Number of successful extensions: 33152
Number of sequences better than 1.0e-02: 68
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 32987
Number of HSP's gapped (non-prelim): 219
length of query: 412
length of database: 324,149,939
effective HSP length: 124
effective length of query: 288
effective length of database: 196,807,271
effective search space: 56680494048
effective search space used: 56680494048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 99 (42.7 bits)