BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645947|ref|NP_208126.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208126.1| (NC_000915) hypothetical protein [Helicoba... 459 e-128
ref|NP_284884.1| (NC_003116) conserved hypothetical protein... 183 1e-45
ref|NP_645196.1| (NC_003923) conserved hypothetical protein... 159 3e-38
gb|AAM22673.1|AF469113_13 (AF469113) unknown [Helicobacter ... 63 2e-09
ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori ... 58 7e-08
ref|NP_207673.1| (NC_000915) hypothetical protein [Helicoba... 55 8e-07
ref|NP_285962.1| (NC_002655) unknown protein from prophage ... 53 3e-06
ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori ... 42 0.007
>ref|NP_208126.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64686 hypothetical protein HP1334 - Helicobacter pylori (strain 26695)
gb|AAD08389.1| (AE000635) H. pylori predicted coding region HP1334 [Helicobacter
pylori 26695]
Length = 224
Score = 459 bits (1181), Expect = e-128
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSKKVAILVDGDFFIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEELYRIFFY 60
MSKKVAILVDGDFFIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEELYRIFFY
Sbjct: 1 MSKKVAILVDGDFFIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEELYRIFFY 60
Query: 61 DCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIRD 120
DCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIRD
Sbjct: 61 DCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIRD 120
Query: 121 QEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISGDSDF 180
QEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISGDSDF
Sbjct: 121 QEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISGDSDF 180
Query: 181 VPASKLARVEGIIFTLDPMGNHIREDLKEHIDYLTTRLPQFKQQ 224
VPASKLARVEGIIFTLDPMGNHIREDLKEHIDYLTTRLPQFKQQ
Sbjct: 181 VPASKLARVEGIIFTLDPMGNHIREDLKEHIDYLTTRLPQFKQQ 224
>ref|NP_284884.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||D81792 conserved hypothetical protein NMA2192 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB72032.1| (AJ391261) hypothetical protein [Neisseria meningitidis]
emb|CAB85404.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 219
Score = 183 bits (465), Expect = 1e-45
Identities = 106/223 (47%), Positives = 139/223 (61%), Gaps = 12/223 (5%)
Query: 4 KVAILVDGDFFIRCYKS-HLKKQPEDLNPKKLAHHIHTYCLKHINKKND-----EELYRI 57
K AIL+DG FFI+ +S L + P D K++A Y + H+ K + ++LYRI
Sbjct: 2 KTAILIDGAFFIKRVRSLGLSQNPHDA--KRIADLAFRYSMLHLKDKINGTDQMDDLYRI 59
Query: 58 FFYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWV 117
FFYDC P +KK H P + +A+D SK+P R LH L K LALRLG L + N W+
Sbjct: 60 FFYDCVPFEKKMHNPVSHRAIDFSKTPEAIFRCNLHTELKKKRKLALRLGKLSD-NTAWI 118
Query: 118 IRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISGD 177
++ Q + L N I E +D + KQKGVD++IGLDI+++ LKK KI+L SGD
Sbjct: 119 LKPQVMKNLLKNPSTQITE---NDVVLDVKQKGVDMRIGLDISSITLKKQADKIILFSGD 175
Query: 178 SDFVPASKLARVEGIIFTLDPMGNHIREDLKEHIDYLTTRLPQ 220
SDFVPA+KLAR EGI F LDPM NH+ DL EHID L T+ P+
Sbjct: 176 SDFVPAAKLARREGIDFILDPMWNHVPPDLMEHIDGLKTKCPK 218
>ref|NP_645196.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94244.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 229
Score = 159 bits (401), Expect = 3e-38
Identities = 93/225 (41%), Positives = 135/225 (59%), Gaps = 10/225 (4%)
Query: 3 KKVAILVDGDFFIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEE-----LYRI 57
+KVAILVDG + Y+ K + K+ A +++YC +H+ + + +E LYRI
Sbjct: 2 EKVAILVDGGY----YRKISAKVYGKVTAKERADELYSYCNRHLKETHFKEEIYNKLYRI 57
Query: 58 FFYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWV 117
F+YDC P+ K ++P +K ++ S + T + E+ + + K +ALRLG L E +
Sbjct: 58 FYYDCPPIDKIVYHPLLKKNVNFSNTDTKKWTEDFFKEMSKKRKVALRLGELSEYSVECN 117
Query: 118 IRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISGD 177
++ KKL N I + + + DF +QKGVD+KIGLDIA+L+ K V KI+LI+GD
Sbjct: 118 LK-YSITKKLLNGSIDLNDLKEKDFSLSLQQKGVDMKIGLDIASLSFKHQVDKIILIAGD 176
Query: 178 SDFVPASKLARVEGIIFTLDPMGNHIREDLKEHIDYLTTRLPQFK 222
SDFVPA+KLAR EGI F LD +G IR +L HID T +FK
Sbjct: 177 SDFVPAAKLARTEGIDFVLDSLGADIRNNLSLHIDGRRTCDEKFK 221
>gb|AAM22673.1|AF469113_13 (AF469113) unknown [Helicobacter pylori]
Length = 197
Score = 63.2 bits (152), Expect = 2e-09
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 2 SKKVAILVDGD-----FFIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEELYR 56
++K AI VD + F + +K + NP+K+ + + K+ LYR
Sbjct: 4 TQKTAIFVDFENLRIGVFDKTWKKKRLFFDYNNNPQKVVDFCNLCVFDSYHDKDLLNLYR 63
Query: 57 IFFYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCL---ALRLGYLDEKN 113
IFFY KPL ++ +++++ L + CL ALRLG L ++
Sbjct: 64 IFFYTAKPL------------------DSHSKKKDILNFLSTLECLNHTALRLGKLVKRG 105
Query: 114 ARWVIRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVL 173
D E QK VD+ +G+D+ ++LK V+K+VL
Sbjct: 106 ------DVE------------------------VQKQVDMLLGIDMLEISLKHFVEKVVL 135
Query: 174 ISGDSDFVPASKLARVEGI---IFTLDPMGNHIREDLKEHIDYL 214
I DSD PA KLAR GI I + + I L +H D++
Sbjct: 136 IGYDSDMSPALKLARTNGIQTEIILFEDLKQKIEPSLTKHCDFI 179
>ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71886 hypothetical protein jhp0812 - Helicobacter pylori (strain J99)
gb|AAD06386.1| (AE001510) putative [Helicobacter pylori J99]
Length = 243
Score = 58.2 bits (139), Expect = 7e-08
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 50 NDEELYRIFFYDCKPLK-KKAHYPYTQKALDLSKSPTYRER----EELHEHLISKPCLAL 104
+DE + RI+FY P + A + L K+P + ++ E L S
Sbjct: 42 DDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKW 101
Query: 105 RLGYLDEKNARWVIRDQEK-EKKLFNRRISIEEFQNDDFIYHA--KQKGVDIKIGLDIAT 161
Y D +N + + ++ E +L +++ + D Y A +QK VD+ +GLDI
Sbjct: 102 EKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGS-YRALLEQKQVDMLMGLDIQR 160
Query: 162 LALKKLVQKIVLISGDSDFVPASKLARVEGIIFTLDPMGNH---IREDLKEHID 212
+A KK+ +I++ S D+D +PA KLAR EG+ + + N + +DLK + D
Sbjct: 161 IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSD 214
>ref|NP_207673.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64629 hypothetical protein HP0879 - Helicobacter pylori (strain 26695)
gb|AAD07927.1| (AE000597) H. pylori predicted coding region HP0879 [Helicobacter
pylori 26695]
Length = 202
Score = 54.7 bits (130), Expect = 8e-07
Identities = 48/168 (28%), Positives = 81/168 (47%), Gaps = 12/168 (7%)
Query: 56 RIFFYDCKPLK-KKAHYPYTQKALDLSKSPTYRER----EELHEHLISKPCLALRLGYLD 110
RI+FY P + A + L K+P + ++ E L S Y D
Sbjct: 7 RIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSD 66
Query: 111 EKNARWVIRDQEK-EKKLFNRRISIEEFQNDDFIYHA--KQKGVDIKIGLDIATLALKKL 167
+N + + ++ E +L +++ + D Y A +QK VD+ +GLDI +A KK+
Sbjct: 67 VENFQHDLASLDQVELRLGRTKLNAIRVEFDGS-YRALLEQKQVDMLMGLDIQRIAFKKI 125
Query: 168 VQKIVLISGDSDFVPASKLARVEGIIFTLDPMGNH---IREDLKEHID 212
+I++ S D+D +PA KLAR EG+ + + N + +DLK + D
Sbjct: 126 ADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSD 173
>ref|NP_285962.1| (NC_002655) unknown protein from prophage CP-933H [Escherichia coli
O157:H7 EDL933]
ref|NP_308300.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54570.1|AE005202_8 (AE005202) unknown protein from prophage CP-933H [Escherichia coli
O157:H7 EDL933]
dbj|BAB33696.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
Length = 129
Score = 52.8 bits (125), Expect = 3e-06
Identities = 41/111 (36%), Positives = 53/111 (46%), Gaps = 19/111 (17%)
Query: 3 KKVAILVDGDFFI-RCYKSHLKKQPE-DLNPKKLAHHIHTYCLKHINKKNDE-------E 53
KK AIL+D FF+ R + +H K E +L + + I + L H+N K E
Sbjct: 2 KKAAILIDAGFFMQRVHATHRKHFAEHELTAQCIMKVIWSMVLSHLNGKRQSQERREPLE 61
Query: 54 LYRIFFYDCKPLKKKAHYPYTQ--------KALDLSKSPTYREREELHEHL 96
LYRI+FYDC PL + P + K L KS Y R ELHE L
Sbjct: 62 LYRIYFYDCPPLDIQTRLPLPEPGNKTPGRKNFKLEKS--YILRTELHEEL 110
>ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71851 hypothetical protein jhp1073 - Helicobacter pylori (strain J99)
gb|AAD06653.1| (AE001535) putative [Helicobacter pylori J99]
Length = 285
Score = 41.6 bits (96), Expect = 0.007
Identities = 48/197 (24%), Positives = 87/197 (43%), Gaps = 34/197 (17%)
Query: 30 NPKKLAHHIHTYCLKHINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDLS----KSPT 85
NP++L I ++ + +EEL RI+FY +P + + K +L K+P
Sbjct: 60 NPEQLLALIRSFL------EPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPK 113
Query: 86 -YRER-------EELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEKKLFNRRISIEEF 137
Y E+ + + + + + LR+G R++ +D K++++
Sbjct: 114 EYEEKVNKSGIIQSFNHAIAQQNQVKLRVG-----RVRFMFKDMPKDQRVHGG------L 162
Query: 138 QNDDFIYHA--KQKGVDIKIGLDIATLALKKLVQKIVLISGDSDFVPASKLARVEG---I 192
+ + I H +QK +D + DI L K + +VL S D+DFVP + A +G
Sbjct: 163 EAEILIPHLELRQKQIDALLAHDITKLYCTKPLGCVVLFSKDTDFVPVLEAAWEKGFEVF 222
Query: 193 IFTLDPMGNHIREDLKE 209
I + N + DLK+
Sbjct: 223 IANIQESPNSVPSDLKK 239
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,900,017
Number of Sequences: 1026957
Number of extensions: 6465890
Number of successful extensions: 14786
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14772
Number of HSP's gapped (non-prelim): 9
length of query: 224
length of database: 324,149,939
effective HSP length: 117
effective length of query: 107
effective length of database: 203,995,970
effective search space: 21827568790
effective search space used: 21827568790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)